data_6SKC # _model_server_result.job_id ME8EfrKW-EV1LguAT36RkQ _model_server_result.datetime_utc '2024-11-04 22:50:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6skc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6SKC # _exptl.entry_id 6SKC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.103 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(3~{S})-1-oxidanyl-3,4-dihydro-2,1-benzoxaborinin-3-yl]benzenecarboximidamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.71 _cell.angle_gamma 90 _cell.entry_id 6SKC _cell.length_a 58.08 _cell.length_b 46.08 _cell.length_c 80.96 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 136 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 110 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 A SG CYS 117 A CYS 136 1_555 A SG CYS 182 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 A SG CYS 147 A CYS 168 1_555 A SG CYS 161 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf6 A SG CYS 172 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf7 B SG CYS 7 B CYS 22 1_555 B SG CYS 136 B CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf8 B SG CYS 26 B CYS 42 1_555 B SG CYS 42 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf9 B SG CYS 110 B CYS 128 1_555 B SG CYS 210 B CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf10 B SG CYS 117 B CYS 136 1_555 B SG CYS 182 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf11 B SG CYS 147 B CYS 168 1_555 B SG CYS 161 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 B SG CYS 172 B CYS 191 1_555 B SG CYS 197 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'C15 H15 B N2 O2' _chem_comp.formula_weight 266.103 _chem_comp.id LH8 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(3~{S})-1-oxidanyl-3,4-dihydro-2,1-benzoxaborinin-3-yl]benzenecarboximidamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N05 C04 LH8 doub 224 n n C04 N01 LH8 sing 225 n n C04 C07 LH8 sing 226 n n C08 C10 LH8 doub 227 n y C08 C07 LH8 sing 228 n y C10 C12 LH8 sing 229 n y C07 C15 LH8 doub 230 n y O33 B32 LH8 sing 231 n n O35 B32 LH8 sing 232 n n O35 C17 LH8 sing 233 n n B32 C31 LH8 sing 234 n n C12 C13 LH8 doub 235 n y C12 C17 LH8 sing 236 n n C15 C13 LH8 sing 237 n y C17 C19 LH8 sing 238 n n C31 C29 LH8 doub 239 n y C31 C22 LH8 sing 240 n y C19 C22 LH8 sing 241 n n C29 C27 LH8 sing 242 n y C22 C23 LH8 doub 243 n y C27 C25 LH8 doub 244 n y C23 C25 LH8 sing 245 n y C10 H1 LH8 sing 246 n n C13 H2 LH8 sing 247 n n C15 H3 LH8 sing 248 n n C17 H4 LH8 sing 249 n n N01 H5 LH8 sing 250 n n N01 H6 LH8 sing 251 n n N05 H7 LH8 sing 252 n n C08 H8 LH8 sing 253 n n C19 H9 LH8 sing 254 n n C19 H10 LH8 sing 255 n n C23 H11 LH8 sing 256 n n C25 H12 LH8 sing 257 n n C27 H13 LH8 sing 258 n n C29 H14 LH8 sing 259 n n O33 H15 LH8 sing 260 n n # _atom_sites.entry_id 6SKC _atom_sites.fract_transf_matrix[1][1] 0.017218 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002638 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021701 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LH8 A 1 301 1 LH8 LIG . D 3 BEN B 1 301 301 BEN BEN . E 4 GOL B 1 302 1 GOL GOL . F 5 HOH A 1 401 171 HOH HOH . F 5 HOH A 2 402 188 HOH HOH . F 5 HOH A 3 403 31 HOH HOH . F 5 HOH A 4 404 187 HOH HOH . F 5 HOH A 5 405 172 HOH HOH . F 5 HOH A 6 406 212 HOH HOH . F 5 HOH A 7 407 44 HOH HOH . F 5 HOH A 8 408 185 HOH HOH . F 5 HOH A 9 409 223 HOH HOH . F 5 HOH A 10 410 192 HOH HOH . F 5 HOH A 11 411 49 HOH HOH . F 5 HOH A 12 412 136 HOH HOH . F 5 HOH A 13 413 173 HOH HOH . F 5 HOH A 14 414 46 HOH HOH . F 5 HOH A 15 415 18 HOH HOH . F 5 HOH A 16 416 12 HOH HOH . F 5 HOH A 17 417 61 HOH HOH . F 5 HOH A 18 418 50 HOH HOH . F 5 HOH A 19 419 191 HOH HOH . F 5 HOH A 20 420 175 HOH HOH . F 5 HOH A 21 421 27 HOH HOH . F 5 HOH A 22 422 186 HOH HOH . F 5 HOH A 23 423 90 HOH HOH . F 5 HOH A 24 424 189 HOH HOH . F 5 HOH A 25 425 195 HOH HOH . F 5 HOH A 26 426 83 HOH HOH . F 5 HOH A 27 427 25 HOH HOH . F 5 HOH A 28 428 33 HOH HOH . F 5 HOH A 29 429 87 HOH HOH . F 5 HOH A 30 430 66 HOH HOH . F 5 HOH A 31 431 60 HOH HOH . F 5 HOH A 32 432 8 HOH HOH . F 5 HOH A 33 433 5 HOH HOH . F 5 HOH A 34 434 56 HOH HOH . F 5 HOH A 35 435 176 HOH HOH . F 5 HOH A 36 436 29 HOH HOH . F 5 HOH A 37 437 180 HOH HOH . F 5 HOH A 38 438 115 HOH HOH . F 5 HOH A 39 439 169 HOH HOH . F 5 HOH A 40 440 207 HOH HOH . F 5 HOH A 41 441 182 HOH HOH . F 5 HOH A 42 442 36 HOH HOH . F 5 HOH A 43 443 35 HOH HOH . F 5 HOH A 44 444 213 HOH HOH . F 5 HOH A 45 445 181 HOH HOH . F 5 HOH A 46 446 70 HOH HOH . F 5 HOH A 47 447 69 HOH HOH . F 5 HOH A 48 448 47 HOH HOH . F 5 HOH A 49 449 86 HOH HOH . F 5 HOH A 50 450 194 HOH HOH . F 5 HOH A 51 451 179 HOH HOH . F 5 HOH A 52 452 211 HOH HOH . F 5 HOH A 53 453 64 HOH HOH . F 5 HOH A 54 454 214 HOH HOH . F 5 HOH A 55 455 174 HOH HOH . F 5 HOH A 56 456 197 HOH HOH . F 5 HOH A 57 457 101 HOH HOH . F 5 HOH A 58 458 200 HOH HOH . F 5 HOH A 59 459 118 HOH HOH . F 5 HOH A 60 460 81 HOH HOH . F 5 HOH A 61 461 198 HOH HOH . F 5 HOH A 62 462 215 HOH HOH . G 5 HOH B 1 401 108 HOH HOH . G 5 HOH B 2 402 30 HOH HOH . G 5 HOH B 3 403 48 HOH HOH . G 5 HOH B 4 404 143 HOH HOH . G 5 HOH B 5 405 220 HOH HOH . G 5 HOH B 6 406 16 HOH HOH . G 5 HOH B 7 407 155 HOH HOH . G 5 HOH B 8 408 57 HOH HOH . G 5 HOH B 9 409 160 HOH HOH . G 5 HOH B 10 410 38 HOH HOH . G 5 HOH B 11 411 11 HOH HOH . G 5 HOH B 12 412 9 HOH HOH . G 5 HOH B 13 413 154 HOH HOH . G 5 HOH B 14 414 22 HOH HOH . G 5 HOH B 15 415 144 HOH HOH . G 5 HOH B 16 416 4 HOH HOH . G 5 HOH B 17 417 125 HOH HOH . G 5 HOH B 18 418 21 HOH HOH . G 5 HOH B 19 419 219 HOH HOH . G 5 HOH B 20 420 139 HOH HOH . G 5 HOH B 21 421 52 HOH HOH . G 5 HOH B 22 422 126 HOH HOH . G 5 HOH B 23 423 132 HOH HOH . G 5 HOH B 24 424 2 HOH HOH . G 5 HOH B 25 425 39 HOH HOH . G 5 HOH B 26 426 3 HOH HOH . G 5 HOH B 27 427 163 HOH HOH . G 5 HOH B 28 428 7 HOH HOH . G 5 HOH B 29 429 124 HOH HOH . G 5 HOH B 30 430 20 HOH HOH . G 5 HOH B 31 431 216 HOH HOH . G 5 HOH B 32 432 218 HOH HOH . G 5 HOH B 33 433 34 HOH HOH . G 5 HOH B 34 434 13 HOH HOH . G 5 HOH B 35 435 165 HOH HOH . G 5 HOH B 36 436 24 HOH HOH . G 5 HOH B 37 437 93 HOH HOH . G 5 HOH B 38 438 168 HOH HOH . G 5 HOH B 39 439 166 HOH HOH . G 5 HOH B 40 440 84 HOH HOH . G 5 HOH B 41 441 19 HOH HOH . G 5 HOH B 42 442 146 HOH HOH . G 5 HOH B 43 443 203 HOH HOH . G 5 HOH B 44 444 112 HOH HOH . G 5 HOH B 45 445 23 HOH HOH . G 5 HOH B 46 446 134 HOH HOH . G 5 HOH B 47 447 65 HOH HOH . G 5 HOH B 48 448 149 HOH HOH . G 5 HOH B 49 449 130 HOH HOH . G 5 HOH B 50 450 51 HOH HOH . G 5 HOH B 51 451 10 HOH HOH . G 5 HOH B 52 452 106 HOH HOH . G 5 HOH B 53 453 37 HOH HOH . G 5 HOH B 54 454 78 HOH HOH . G 5 HOH B 55 455 114 HOH HOH . G 5 HOH B 56 456 210 HOH HOH . G 5 HOH B 57 457 67 HOH HOH . G 5 HOH B 58 458 53 HOH HOH . G 5 HOH B 59 459 128 HOH HOH . G 5 HOH B 60 460 94 HOH HOH . G 5 HOH B 61 461 157 HOH HOH . G 5 HOH B 62 462 222 HOH HOH . G 5 HOH B 63 463 201 HOH HOH . G 5 HOH B 64 464 26 HOH HOH . G 5 HOH B 65 465 135 HOH HOH . G 5 HOH B 66 466 151 HOH HOH . G 5 HOH B 67 467 1 HOH HOH . G 5 HOH B 68 468 209 HOH HOH . G 5 HOH B 69 469 105 HOH HOH . G 5 HOH B 70 470 131 HOH HOH . G 5 HOH B 71 471 142 HOH HOH . G 5 HOH B 72 472 145 HOH HOH . G 5 HOH B 73 473 42 HOH HOH . G 5 HOH B 74 474 92 HOH HOH . G 5 HOH B 75 475 221 HOH HOH . G 5 HOH B 76 476 6 HOH HOH . G 5 HOH B 77 477 123 HOH HOH . G 5 HOH B 78 478 205 HOH HOH . G 5 HOH B 79 479 161 HOH HOH . G 5 HOH B 80 480 156 HOH HOH . G 5 HOH B 81 481 153 HOH HOH . G 5 HOH B 82 482 40 HOH HOH . G 5 HOH B 83 483 217 HOH HOH . G 5 HOH B 84 484 15 HOH HOH . G 5 HOH B 85 485 129 HOH HOH . G 5 HOH B 86 486 97 HOH HOH . G 5 HOH B 87 487 133 HOH HOH . G 5 HOH B 88 488 152 HOH HOH . G 5 HOH B 89 489 62 HOH HOH . G 5 HOH B 90 490 91 HOH HOH . G 5 HOH B 91 491 113 HOH HOH . G 5 HOH B 92 492 54 HOH HOH . G 5 HOH B 93 493 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 LH8 . . . C 2 -34.246 -22.317 -22.702 1 45.12 ? C10 LH8 301 A 1 HETATM 2 C C13 LH8 . . . C 2 -34.032 -23.455 -20.614 1 43.37 ? C13 LH8 301 A 1 HETATM 3 C C15 LH8 . . . C 2 -34.031 -24.676 -21.277 1 41.38 ? C15 LH8 301 A 1 HETATM 4 C C17 LH8 . . . C 2 -34.055 -20.924 -20.613 1 45.07 ? C17 LH8 301 A 1 HETATM 5 C C22 LH8 . . . C 2 -35.071 -19.204 -19.127 1 46.95 ? C22 LH8 301 A 1 HETATM 6 N N01 LH8 . . . C 2 -33.197 -26.949 -23.007 1 34.69 ? N01 LH8 301 A 1 HETATM 7 C C04 LH8 . . . C 2 -34.104 -26.034 -23.397 1 38.01 ? C04 LH8 301 A 1 HETATM 8 N N05 LH8 . . . C 2 -34.853 -26.294 -24.426 1 39.24 ? N05 LH8 301 A 1 HETATM 9 C C07 LH8 . . . C 2 -34.131 -24.729 -22.668 1 39.48 ? C07 LH8 301 A 1 HETATM 10 C C08 LH8 . . . C 2 -34.231 -23.53 -23.37 1 42.89 ? C08 LH8 301 A 1 HETATM 11 C C12 LH8 . . . C 2 -34.172 -22.258 -21.314 1 45.16 ? C12 LH8 301 A 1 HETATM 12 C C19 LH8 . . . C 2 -35.235 -20.587 -19.717 1 45.78 ? C19 LH8 301 A 1 HETATM 13 C C23 LH8 . . . C 2 -35.395 -18.933 -17.797 1 48.72 ? C23 LH8 301 A 1 HETATM 14 C C25 LH8 . . . C 2 -35.241 -17.659 -17.273 1 48.26 ? C25 LH8 301 A 1 HETATM 15 C C27 LH8 . . . C 2 -34.757 -16.639 -18.068 1 45.74 ? C27 LH8 301 A 1 HETATM 16 C C29 LH8 . . . C 2 -34.435 -16.89 -19.394 1 45.45 ? C29 LH8 301 A 1 HETATM 17 C C31 LH8 . . . C 2 -34.584 -18.167 -19.962 1 44.4 ? C31 LH8 301 A 1 HETATM 18 B B32 LH8 . . . C 2 -34.126 -18.533 -21.385 1 42.01 ? B32 LH8 301 A 1 HETATM 19 O O33 LH8 . . . C 2 -33.433 -17.668 -22.171 1 36.91 ? O33 LH8 301 A 1 HETATM 20 O O35 LH8 . . . C 2 -33.791 -19.857 -21.575 1 45.54 ? O35 LH8 301 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #