data_6SKC
#
_model_server_result.job_id            NnOQ3HkWH0sYMwAgwErIvQ 
_model_server_result.datetime_utc      '2024-11-04 22:47:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6skc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    6SKC 
#
_exptl.entry_id    6SKC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.152 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZAMIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.71 
_cell.angle_gamma         90 
_cell.entry_id            6SKC 
_cell.length_a            58.08 
_cell.length_b            46.08 
_cell.length_c            80.96 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SKC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 136 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf3 A SG CYS 110 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf4 A SG CYS 117 A CYS 136 1_555 A SG CYS 182 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf5 A SG CYS 147 A CYS 168 1_555 A SG CYS 161 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf6 A SG CYS 172 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf7 B SG CYS 7 B CYS 22 1_555 B SG CYS 136 B CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf8 B SG CYS 26 B CYS 42 1_555 B SG CYS 42 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf9 B SG CYS 110 B CYS 128 1_555 B SG CYS 210 B CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf10 B SG CYS 117 B CYS 136 1_555 B SG CYS 182 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf11 B SG CYS 147 B CYS 168 1_555 B SG CYS 161 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf12 B SG CYS 172 B CYS 191 1_555 B SG CYS 197 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
#
_chem_comp.formula           'C7 H8 N2' 
_chem_comp.formula_weight    120.152 
_chem_comp.id                BEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZAMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BEN doub 70 n y 
C1 C6 BEN sing 71 n y 
C1 C BEN sing 72 n n 
C2 C3 BEN sing 73 n y 
C2 H2 BEN sing 74 n n 
C3 C4 BEN doub 75 n y 
C3 H3 BEN sing 76 n n 
C4 C5 BEN sing 77 n y 
C4 H4 BEN sing 78 n n 
C5 C6 BEN doub 79 n y 
C5 H5 BEN sing 80 n n 
C6 H6 BEN sing 81 n n 
C N1 BEN doub 82 e n 
C N2 BEN sing 83 n n 
N1 HN1 BEN sing 84 n n 
N2 HN21 BEN sing 85 n n 
N2 HN22 BEN sing 86 n n 
#
_atom_sites.entry_id                     6SKC 
_atom_sites.fract_transf_matrix[1][1]    0.017218 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002638 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021701 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012496 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LH8 A 1 301 1 LH8 LIG . 
D 3 BEN B 1 301 301 BEN BEN . 
E 4 GOL B 1 302 1 GOL GOL . 
F 5 HOH A 1 401 171 HOH HOH . 
F 5 HOH A 2 402 188 HOH HOH . 
F 5 HOH A 3 403 31 HOH HOH . 
F 5 HOH A 4 404 187 HOH HOH . 
F 5 HOH A 5 405 172 HOH HOH . 
F 5 HOH A 6 406 212 HOH HOH . 
F 5 HOH A 7 407 44 HOH HOH . 
F 5 HOH A 8 408 185 HOH HOH . 
F 5 HOH A 9 409 223 HOH HOH . 
F 5 HOH A 10 410 192 HOH HOH . 
F 5 HOH A 11 411 49 HOH HOH . 
F 5 HOH A 12 412 136 HOH HOH . 
F 5 HOH A 13 413 173 HOH HOH . 
F 5 HOH A 14 414 46 HOH HOH . 
F 5 HOH A 15 415 18 HOH HOH . 
F 5 HOH A 16 416 12 HOH HOH . 
F 5 HOH A 17 417 61 HOH HOH . 
F 5 HOH A 18 418 50 HOH HOH . 
F 5 HOH A 19 419 191 HOH HOH . 
F 5 HOH A 20 420 175 HOH HOH . 
F 5 HOH A 21 421 27 HOH HOH . 
F 5 HOH A 22 422 186 HOH HOH . 
F 5 HOH A 23 423 90 HOH HOH . 
F 5 HOH A 24 424 189 HOH HOH . 
F 5 HOH A 25 425 195 HOH HOH . 
F 5 HOH A 26 426 83 HOH HOH . 
F 5 HOH A 27 427 25 HOH HOH . 
F 5 HOH A 28 428 33 HOH HOH . 
F 5 HOH A 29 429 87 HOH HOH . 
F 5 HOH A 30 430 66 HOH HOH . 
F 5 HOH A 31 431 60 HOH HOH . 
F 5 HOH A 32 432 8 HOH HOH . 
F 5 HOH A 33 433 5 HOH HOH . 
F 5 HOH A 34 434 56 HOH HOH . 
F 5 HOH A 35 435 176 HOH HOH . 
F 5 HOH A 36 436 29 HOH HOH . 
F 5 HOH A 37 437 180 HOH HOH . 
F 5 HOH A 38 438 115 HOH HOH . 
F 5 HOH A 39 439 169 HOH HOH . 
F 5 HOH A 40 440 207 HOH HOH . 
F 5 HOH A 41 441 182 HOH HOH . 
F 5 HOH A 42 442 36 HOH HOH . 
F 5 HOH A 43 443 35 HOH HOH . 
F 5 HOH A 44 444 213 HOH HOH . 
F 5 HOH A 45 445 181 HOH HOH . 
F 5 HOH A 46 446 70 HOH HOH . 
F 5 HOH A 47 447 69 HOH HOH . 
F 5 HOH A 48 448 47 HOH HOH . 
F 5 HOH A 49 449 86 HOH HOH . 
F 5 HOH A 50 450 194 HOH HOH . 
F 5 HOH A 51 451 179 HOH HOH . 
F 5 HOH A 52 452 211 HOH HOH . 
F 5 HOH A 53 453 64 HOH HOH . 
F 5 HOH A 54 454 214 HOH HOH . 
F 5 HOH A 55 455 174 HOH HOH . 
F 5 HOH A 56 456 197 HOH HOH . 
F 5 HOH A 57 457 101 HOH HOH . 
F 5 HOH A 58 458 200 HOH HOH . 
F 5 HOH A 59 459 118 HOH HOH . 
F 5 HOH A 60 460 81 HOH HOH . 
F 5 HOH A 61 461 198 HOH HOH . 
F 5 HOH A 62 462 215 HOH HOH . 
G 5 HOH B 1 401 108 HOH HOH . 
G 5 HOH B 2 402 30 HOH HOH . 
G 5 HOH B 3 403 48 HOH HOH . 
G 5 HOH B 4 404 143 HOH HOH . 
G 5 HOH B 5 405 220 HOH HOH . 
G 5 HOH B 6 406 16 HOH HOH . 
G 5 HOH B 7 407 155 HOH HOH . 
G 5 HOH B 8 408 57 HOH HOH . 
G 5 HOH B 9 409 160 HOH HOH . 
G 5 HOH B 10 410 38 HOH HOH . 
G 5 HOH B 11 411 11 HOH HOH . 
G 5 HOH B 12 412 9 HOH HOH . 
G 5 HOH B 13 413 154 HOH HOH . 
G 5 HOH B 14 414 22 HOH HOH . 
G 5 HOH B 15 415 144 HOH HOH . 
G 5 HOH B 16 416 4 HOH HOH . 
G 5 HOH B 17 417 125 HOH HOH . 
G 5 HOH B 18 418 21 HOH HOH . 
G 5 HOH B 19 419 219 HOH HOH . 
G 5 HOH B 20 420 139 HOH HOH . 
G 5 HOH B 21 421 52 HOH HOH . 
G 5 HOH B 22 422 126 HOH HOH . 
G 5 HOH B 23 423 132 HOH HOH . 
G 5 HOH B 24 424 2 HOH HOH . 
G 5 HOH B 25 425 39 HOH HOH . 
G 5 HOH B 26 426 3 HOH HOH . 
G 5 HOH B 27 427 163 HOH HOH . 
G 5 HOH B 28 428 7 HOH HOH . 
G 5 HOH B 29 429 124 HOH HOH . 
G 5 HOH B 30 430 20 HOH HOH . 
G 5 HOH B 31 431 216 HOH HOH . 
G 5 HOH B 32 432 218 HOH HOH . 
G 5 HOH B 33 433 34 HOH HOH . 
G 5 HOH B 34 434 13 HOH HOH . 
G 5 HOH B 35 435 165 HOH HOH . 
G 5 HOH B 36 436 24 HOH HOH . 
G 5 HOH B 37 437 93 HOH HOH . 
G 5 HOH B 38 438 168 HOH HOH . 
G 5 HOH B 39 439 166 HOH HOH . 
G 5 HOH B 40 440 84 HOH HOH . 
G 5 HOH B 41 441 19 HOH HOH . 
G 5 HOH B 42 442 146 HOH HOH . 
G 5 HOH B 43 443 203 HOH HOH . 
G 5 HOH B 44 444 112 HOH HOH . 
G 5 HOH B 45 445 23 HOH HOH . 
G 5 HOH B 46 446 134 HOH HOH . 
G 5 HOH B 47 447 65 HOH HOH . 
G 5 HOH B 48 448 149 HOH HOH . 
G 5 HOH B 49 449 130 HOH HOH . 
G 5 HOH B 50 450 51 HOH HOH . 
G 5 HOH B 51 451 10 HOH HOH . 
G 5 HOH B 52 452 106 HOH HOH . 
G 5 HOH B 53 453 37 HOH HOH . 
G 5 HOH B 54 454 78 HOH HOH . 
G 5 HOH B 55 455 114 HOH HOH . 
G 5 HOH B 56 456 210 HOH HOH . 
G 5 HOH B 57 457 67 HOH HOH . 
G 5 HOH B 58 458 53 HOH HOH . 
G 5 HOH B 59 459 128 HOH HOH . 
G 5 HOH B 60 460 94 HOH HOH . 
G 5 HOH B 61 461 157 HOH HOH . 
G 5 HOH B 62 462 222 HOH HOH . 
G 5 HOH B 63 463 201 HOH HOH . 
G 5 HOH B 64 464 26 HOH HOH . 
G 5 HOH B 65 465 135 HOH HOH . 
G 5 HOH B 66 466 151 HOH HOH . 
G 5 HOH B 67 467 1 HOH HOH . 
G 5 HOH B 68 468 209 HOH HOH . 
G 5 HOH B 69 469 105 HOH HOH . 
G 5 HOH B 70 470 131 HOH HOH . 
G 5 HOH B 71 471 142 HOH HOH . 
G 5 HOH B 72 472 145 HOH HOH . 
G 5 HOH B 73 473 42 HOH HOH . 
G 5 HOH B 74 474 92 HOH HOH . 
G 5 HOH B 75 475 221 HOH HOH . 
G 5 HOH B 76 476 6 HOH HOH . 
G 5 HOH B 77 477 123 HOH HOH . 
G 5 HOH B 78 478 205 HOH HOH . 
G 5 HOH B 79 479 161 HOH HOH . 
G 5 HOH B 80 480 156 HOH HOH . 
G 5 HOH B 81 481 153 HOH HOH . 
G 5 HOH B 82 482 40 HOH HOH . 
G 5 HOH B 83 483 217 HOH HOH . 
G 5 HOH B 84 484 15 HOH HOH . 
G 5 HOH B 85 485 129 HOH HOH . 
G 5 HOH B 86 486 97 HOH HOH . 
G 5 HOH B 87 487 133 HOH HOH . 
G 5 HOH B 88 488 152 HOH HOH . 
G 5 HOH B 89 489 62 HOH HOH . 
G 5 HOH B 90 490 91 HOH HOH . 
G 5 HOH B 91 491 113 HOH HOH . 
G 5 HOH B 92 492 54 HOH HOH . 
G 5 HOH B 93 493 148 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BEN . . . D 3 -21.128 -2.739 -16.879 1 29.81 ? C1 BEN 301 B 1 
HETATM 2 C C2 BEN . . . D 3 -22.053 -3.582 -17.506 1 31.63 ? C2 BEN 301 B 1 
HETATM 3 C C3 BEN . . . D 3 -22.085 -4.948 -17.22 1 32.3 ? C3 BEN 301 B 1 
HETATM 4 C C4 BEN . . . D 3 -21.154 -5.493 -16.334 1 30.27 ? C4 BEN 301 B 1 
HETATM 5 C C5 BEN . . . D 3 -20.226 -4.655 -15.716 1 30.22 ? C5 BEN 301 B 1 
HETATM 6 C C6 BEN . . . D 3 -20.23 -3.283 -15.967 1 29.94 ? C6 BEN 301 B 1 
HETATM 7 C C BEN . . . D 3 -21.139 -1.231 -17.183 1 28.57 ? C BEN 301 B 1 
HETATM 8 N N1 BEN . . . D 3 -21.618 -0.771 -18.471 1 29.84 ? N1 BEN 301 B 1 
HETATM 9 N N2 BEN . . . D 3 -20.756 -0.372 -16.348 1 26.12 ? N2 BEN 301 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           246 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           9 
#