data_6SKJ
#
_model_server_result.job_id            RMjdMIgS1yjwRNo1-GXjww 
_model_server_result.datetime_utc      '2024-11-05 04:13:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6skj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    6SKJ 
#
_exptl.entry_id    6SKJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.92 
_cell.angle_gamma         90 
_cell.entry_id            6SKJ 
_cell.length_a            92.965 
_cell.length_b            58.27 
_cell.length_c            154.132 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SKJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,J,M,O 1 1 
B,D,F,G,H,I,K,L,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C N GLY 1 C GLY 2 1_555 J C2M MYA . C MYA 101 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.32 ? 
covale ? covale2 D N GLY 1 D GLY 2 1_555 K C1 MYR . D MYR 201 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.321 ? 
covale ? covale3 D N GLY 1 D GLY 2 1_555 L C2M MYA . D MYA 202 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.32 ? 
metalc ? metalc1 I MG MG . B MG 504 1_555 N O HOH . B HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 215 n n 
C1 C2 GOL sing 216 n n 
C1 H11 GOL sing 217 n n 
C1 H12 GOL sing 218 n n 
O1 HO1 GOL sing 219 n n 
C2 O2 GOL sing 220 n n 
C2 C3 GOL sing 221 n n 
C2 H2 GOL sing 222 n n 
O2 HO2 GOL sing 223 n n 
C3 O3 GOL sing 224 n n 
C3 H31 GOL sing 225 n n 
C3 H32 GOL sing 226 n n 
O3 HO3 GOL sing 227 n n 
#
_atom_sites.entry_id                     6SKJ 
_atom_sites.fract_transf_matrix[1][1]    0.010757 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000172 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017161 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006489 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 501 503 GOL GOL . 
F 3 GOL B 1 501 502 GOL GOL . 
G 3 GOL B 1 502 503 GOL GOL . 
H 4 COA B 1 503 501 COA COA . 
I 5 MG B 1 504 1 MG MG . 
J 6 MYA C 1 101 1 MYA MYA . 
K 7 MYR D 1 201 201 MYR MYR . 
L 6 MYA D 1 202 1 MYA MYB . 
M 8 HOH A 1 601 55 HOH HOH . 
M 8 HOH A 2 602 46 HOH HOH . 
M 8 HOH A 3 603 42 HOH HOH . 
M 8 HOH A 4 604 39 HOH HOH . 
M 8 HOH A 5 605 32 HOH HOH . 
M 8 HOH A 6 606 26 HOH HOH . 
M 8 HOH A 7 607 5 HOH HOH . 
M 8 HOH A 8 608 89 HOH HOH . 
M 8 HOH A 9 609 30 HOH HOH . 
M 8 HOH A 10 610 29 HOH HOH . 
M 8 HOH A 11 611 2 HOH HOH . 
M 8 HOH A 12 612 65 HOH HOH . 
M 8 HOH A 13 613 11 HOH HOH . 
M 8 HOH A 14 614 20 HOH HOH . 
M 8 HOH A 15 615 35 HOH HOH . 
M 8 HOH A 16 616 33 HOH HOH . 
M 8 HOH A 17 617 17 HOH HOH . 
M 8 HOH A 18 618 56 HOH HOH . 
M 8 HOH A 19 619 47 HOH HOH . 
M 8 HOH A 20 620 64 HOH HOH . 
M 8 HOH A 21 621 15 HOH HOH . 
M 8 HOH A 22 622 76 HOH HOH . 
M 8 HOH A 23 623 6 HOH HOH . 
M 8 HOH A 24 624 67 HOH HOH . 
M 8 HOH A 25 625 85 HOH HOH . 
M 8 HOH A 26 626 25 HOH HOH . 
M 8 HOH A 27 627 74 HOH HOH . 
M 8 HOH A 28 628 73 HOH HOH . 
M 8 HOH A 29 629 40 HOH HOH . 
M 8 HOH A 30 630 58 HOH HOH . 
M 8 HOH A 31 631 23 HOH HOH . 
M 8 HOH A 32 632 44 HOH HOH . 
M 8 HOH A 33 633 86 HOH HOH . 
M 8 HOH A 34 634 66 HOH HOH . 
M 8 HOH A 35 635 36 HOH HOH . 
M 8 HOH A 36 636 9 HOH HOH . 
M 8 HOH A 37 637 61 HOH HOH . 
M 8 HOH A 38 638 50 HOH HOH . 
M 8 HOH A 39 639 72 HOH HOH . 
M 8 HOH A 40 640 63 HOH HOH . 
M 8 HOH A 41 641 70 HOH HOH . 
M 8 HOH A 42 642 83 HOH HOH . 
M 8 HOH A 43 643 84 HOH HOH . 
M 8 HOH A 44 644 90 HOH HOH . 
M 8 HOH A 45 645 88 HOH HOH . 
M 8 HOH A 46 646 77 HOH HOH . 
M 8 HOH A 47 647 71 HOH HOH . 
M 8 HOH A 48 648 62 HOH HOH . 
M 8 HOH A 49 649 22 HOH HOH . 
N 8 HOH B 1 601 43 HOH HOH . 
N 8 HOH B 2 602 19 HOH HOH . 
N 8 HOH B 3 603 13 HOH HOH . 
N 8 HOH B 4 604 79 HOH HOH . 
N 8 HOH B 5 605 51 HOH HOH . 
N 8 HOH B 6 606 37 HOH HOH . 
N 8 HOH B 7 607 54 HOH HOH . 
N 8 HOH B 8 608 3 HOH HOH . 
N 8 HOH B 9 609 21 HOH HOH . 
N 8 HOH B 10 610 78 HOH HOH . 
N 8 HOH B 11 611 1 HOH HOH . 
N 8 HOH B 12 612 24 HOH HOH . 
N 8 HOH B 13 613 4 HOH HOH . 
N 8 HOH B 14 614 7 HOH HOH . 
N 8 HOH B 15 615 12 HOH HOH . 
N 8 HOH B 16 616 45 HOH HOH . 
N 8 HOH B 17 617 80 HOH HOH . 
N 8 HOH B 18 618 14 HOH HOH . 
N 8 HOH B 19 619 31 HOH HOH . 
N 8 HOH B 20 620 10 HOH HOH . 
N 8 HOH B 21 621 52 HOH HOH . 
N 8 HOH B 22 622 27 HOH HOH . 
N 8 HOH B 23 623 34 HOH HOH . 
N 8 HOH B 24 624 8 HOH HOH . 
N 8 HOH B 25 625 48 HOH HOH . 
N 8 HOH B 26 626 81 HOH HOH . 
N 8 HOH B 27 627 53 HOH HOH . 
N 8 HOH B 28 628 68 HOH HOH . 
N 8 HOH B 29 629 59 HOH HOH . 
N 8 HOH B 30 630 28 HOH HOH . 
N 8 HOH B 31 631 49 HOH HOH . 
N 8 HOH B 32 632 18 HOH HOH . 
N 8 HOH B 33 633 75 HOH HOH . 
N 8 HOH B 34 634 87 HOH HOH . 
N 8 HOH B 35 635 69 HOH HOH . 
N 8 HOH B 36 636 16 HOH HOH . 
N 8 HOH B 37 637 38 HOH HOH . 
O 8 HOH C 1 201 41 HOH HOH . 
O 8 HOH C 2 202 82 HOH HOH . 
O 8 HOH C 3 203 60 HOH HOH . 
P 8 HOH D 1 301 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 89.315 -32.331 15.968 1 23.7 ? C1 GOL 501 A 1 
HETATM 2 O O1 GOL . . . E 3 90.585 -32.935 15.89 1 25.72 ? O1 GOL 501 A 1 
HETATM 3 C C2 GOL . . . E 3 88.382 -33.058 15.012 1 27.52 ? C2 GOL 501 A 1 
HETATM 4 O O2 GOL . . . E 3 87.077 -33.027 15.543 1 28.19 ? O2 GOL 501 A 1 
HETATM 5 C C3 GOL . . . E 3 88.388 -32.356 13.657 1 26.5 ? C3 GOL 501 A 1 
HETATM 6 O O3 GOL . . . E 3 87.253 -31.524 13.56 1 27.42 ? O3 GOL 501 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#