data_6SKJ # _model_server_result.job_id w0G50-Iby7egr9vqy71v9g _model_server_result.datetime_utc '2024-11-26 17:56:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6skj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":503}' # _entry.id 6SKJ # _exptl.entry_id 6SKJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.92 _cell.angle_gamma 90 _cell.entry_id 6SKJ _cell.length_a 92.965 _cell.length_b 58.27 _cell.length_c 154.132 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,J,M,O 1 1 B,D,F,G,H,I,K,L,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C N GLY 1 C GLY 2 1_555 J C2M MYA . C MYA 101 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.32 ? covale ? covale2 D N GLY 1 D GLY 2 1_555 K C1 MYR . D MYR 201 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.321 ? covale ? covale3 D N GLY 1 D GLY 2 1_555 L C2M MYA . D MYA 202 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.32 ? metalc ? metalc1 I MG MG . B MG 504 1_555 N O HOH . B HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 6SKJ _atom_sites.fract_transf_matrix[1][1] 0.010757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000172 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017161 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 501 503 GOL GOL . F 3 GOL B 1 501 502 GOL GOL . G 3 GOL B 1 502 503 GOL GOL . H 4 COA B 1 503 501 COA COA . I 5 MG B 1 504 1 MG MG . J 6 MYA C 1 101 1 MYA MYA . K 7 MYR D 1 201 201 MYR MYR . L 6 MYA D 1 202 1 MYA MYB . M 8 HOH A 1 601 55 HOH HOH . M 8 HOH A 2 602 46 HOH HOH . M 8 HOH A 3 603 42 HOH HOH . M 8 HOH A 4 604 39 HOH HOH . M 8 HOH A 5 605 32 HOH HOH . M 8 HOH A 6 606 26 HOH HOH . M 8 HOH A 7 607 5 HOH HOH . M 8 HOH A 8 608 89 HOH HOH . M 8 HOH A 9 609 30 HOH HOH . M 8 HOH A 10 610 29 HOH HOH . M 8 HOH A 11 611 2 HOH HOH . M 8 HOH A 12 612 65 HOH HOH . M 8 HOH A 13 613 11 HOH HOH . M 8 HOH A 14 614 20 HOH HOH . M 8 HOH A 15 615 35 HOH HOH . M 8 HOH A 16 616 33 HOH HOH . M 8 HOH A 17 617 17 HOH HOH . M 8 HOH A 18 618 56 HOH HOH . M 8 HOH A 19 619 47 HOH HOH . M 8 HOH A 20 620 64 HOH HOH . M 8 HOH A 21 621 15 HOH HOH . M 8 HOH A 22 622 76 HOH HOH . M 8 HOH A 23 623 6 HOH HOH . M 8 HOH A 24 624 67 HOH HOH . M 8 HOH A 25 625 85 HOH HOH . M 8 HOH A 26 626 25 HOH HOH . M 8 HOH A 27 627 74 HOH HOH . M 8 HOH A 28 628 73 HOH HOH . M 8 HOH A 29 629 40 HOH HOH . M 8 HOH A 30 630 58 HOH HOH . M 8 HOH A 31 631 23 HOH HOH . M 8 HOH A 32 632 44 HOH HOH . M 8 HOH A 33 633 86 HOH HOH . M 8 HOH A 34 634 66 HOH HOH . M 8 HOH A 35 635 36 HOH HOH . M 8 HOH A 36 636 9 HOH HOH . M 8 HOH A 37 637 61 HOH HOH . M 8 HOH A 38 638 50 HOH HOH . M 8 HOH A 39 639 72 HOH HOH . M 8 HOH A 40 640 63 HOH HOH . M 8 HOH A 41 641 70 HOH HOH . M 8 HOH A 42 642 83 HOH HOH . M 8 HOH A 43 643 84 HOH HOH . M 8 HOH A 44 644 90 HOH HOH . M 8 HOH A 45 645 88 HOH HOH . M 8 HOH A 46 646 77 HOH HOH . M 8 HOH A 47 647 71 HOH HOH . M 8 HOH A 48 648 62 HOH HOH . M 8 HOH A 49 649 22 HOH HOH . N 8 HOH B 1 601 43 HOH HOH . N 8 HOH B 2 602 19 HOH HOH . N 8 HOH B 3 603 13 HOH HOH . N 8 HOH B 4 604 79 HOH HOH . N 8 HOH B 5 605 51 HOH HOH . N 8 HOH B 6 606 37 HOH HOH . N 8 HOH B 7 607 54 HOH HOH . N 8 HOH B 8 608 3 HOH HOH . N 8 HOH B 9 609 21 HOH HOH . N 8 HOH B 10 610 78 HOH HOH . N 8 HOH B 11 611 1 HOH HOH . N 8 HOH B 12 612 24 HOH HOH . N 8 HOH B 13 613 4 HOH HOH . N 8 HOH B 14 614 7 HOH HOH . N 8 HOH B 15 615 12 HOH HOH . N 8 HOH B 16 616 45 HOH HOH . N 8 HOH B 17 617 80 HOH HOH . N 8 HOH B 18 618 14 HOH HOH . N 8 HOH B 19 619 31 HOH HOH . N 8 HOH B 20 620 10 HOH HOH . N 8 HOH B 21 621 52 HOH HOH . N 8 HOH B 22 622 27 HOH HOH . N 8 HOH B 23 623 34 HOH HOH . N 8 HOH B 24 624 8 HOH HOH . N 8 HOH B 25 625 48 HOH HOH . N 8 HOH B 26 626 81 HOH HOH . N 8 HOH B 27 627 53 HOH HOH . N 8 HOH B 28 628 68 HOH HOH . N 8 HOH B 29 629 59 HOH HOH . N 8 HOH B 30 630 28 HOH HOH . N 8 HOH B 31 631 49 HOH HOH . N 8 HOH B 32 632 18 HOH HOH . N 8 HOH B 33 633 75 HOH HOH . N 8 HOH B 34 634 87 HOH HOH . N 8 HOH B 35 635 69 HOH HOH . N 8 HOH B 36 636 16 HOH HOH . N 8 HOH B 37 637 38 HOH HOH . O 8 HOH C 1 201 41 HOH HOH . O 8 HOH C 2 202 82 HOH HOH . O 8 HOH C 3 203 60 HOH HOH . P 8 HOH D 1 301 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . B . H 4 78.768 -20.829 57.796 0.5 32.52 ? N1A COA 503 B 1 HETATM 2 C C2A COA . B . H 4 78.608 -19.706 57.029 0.5 31.72 ? C2A COA 503 B 1 HETATM 3 N N3A COA . B . H 4 78.231 -18.534 57.603 0.5 34.35 ? N3A COA 503 B 1 HETATM 4 C C4A COA . B . H 4 78.013 -18.465 58.936 0.5 35.93 ? C4A COA 503 B 1 HETATM 5 C C5A COA . B . H 4 78.171 -19.573 59.701 0.5 36.17 ? C5A COA 503 B 1 HETATM 6 C C6A COA . B . H 4 78.555 -20.77 59.111 0.5 34.96 ? C6A COA 503 B 1 HETATM 7 N N6A COA . B . H 4 78.818 -22.156 59.638 0.5 34.86 ? N6A COA 503 B 1 HETATM 8 N N7A COA . B . H 4 77.893 -19.228 60.978 0.5 35.54 ? N7A COA 503 B 1 HETATM 9 C C8A COA . B . H 4 77.564 -17.912 61.004 0.5 38.85 ? C8A COA 503 B 1 HETATM 10 N N9A COA . B . H 4 77.638 -17.448 59.747 0.5 39.54 ? N9A COA 503 B 1 HETATM 11 C C1B COA . B . H 4 77.359 -16.109 59.375 0.5 40 ? C1B COA 503 B 1 HETATM 12 C C2B COA . B . H 4 76.379 -15.597 60.099 0.5 37.33 ? C2B COA 503 B 1 HETATM 13 O O2B COA . B . H 4 75.095 -16.018 59.55 0.5 37.68 ? O2B COA 503 B 1 HETATM 14 C C3B COA . B . H 4 76.604 -14.081 59.872 0.5 38.09 ? C3B COA 503 B 1 HETATM 15 O O3B COA . B . H 4 76.156 -13.718 58.665 0.5 36.7 ? O3B COA 503 B 1 HETATM 16 P P3B COA . B . H 4 74.669 -12.956 58.582 0.5 39.3 ? P3B COA 503 B 1 HETATM 17 O O7A COA . B . H 4 74.091 -13.118 57.197 0.5 36.54 ? O7A COA 503 B 1 HETATM 18 O O8A COA . B . H 4 74.815 -11.493 58.89 0.5 36.12 ? O8A COA 503 B 1 HETATM 19 O O9A COA . B . H 4 73.74 -13.589 59.585 0.5 38.74 ? O9A COA 503 B 1 HETATM 20 C C4B COA . B . H 4 78.177 -13.926 59.949 0.5 38.47 ? C4B COA 503 B 1 HETATM 21 O O4B COA . B . H 4 78.656 -15.115 59.68 0.5 40.63 ? O4B COA 503 B 1 HETATM 22 C C5B COA . B . H 4 78.497 -13.494 61.385 0.5 38.64 ? C5B COA 503 B 1 HETATM 23 O O5B COA . B . H 4 79.735 -12.806 61.469 0.5 38.07 ? O5B COA 503 B 1 HETATM 24 P P1A COA . B . H 4 80.548 -13.05 62.892 0.5 36.85 ? P1A COA 503 B 1 HETATM 25 O O1A COA . B . H 4 81.913 -12.388 62.907 0.5 35.45 ? O1A COA 503 B 1 HETATM 26 O O2A COA . B . H 4 79.723 -12.478 64.007 0.5 39.5 ? O2A COA 503 B 1 HETATM 27 O O3A COA . B . H 4 80.696 -14.722 63.109 0.5 38.32 ? O3A COA 503 B 1 HETATM 28 P P2A COA . B . H 4 81.542 -15.441 64.409 0.5 41.17 ? P2A COA 503 B 1 HETATM 29 O O4A COA . B . H 4 80.565 -15.839 65.507 0.5 37.49 ? O4A COA 503 B 1 HETATM 30 O O5A COA . B . H 4 82.558 -14.453 64.967 0.5 38.06 ? O5A COA 503 B 1 HETATM 31 O O6A COA . B . H 4 82.307 -16.787 63.771 0.5 38.4 ? O6A COA 503 B 1 HETATM 32 C CBP COA . B . H 4 82.227 -18.994 62.964 0.5 35.51 ? CBP COA 503 B 1 HETATM 33 C CCP COA . B . H 4 81.593 -17.594 62.826 0.5 37.07 ? CCP COA 503 B 1 HETATM 34 C CDP COA . B . H 4 81.293 -20.06 62.362 0.5 35.89 ? CDP COA 503 B 1 HETATM 35 C CEP COA . B . H 4 83.527 -18.939 62.218 0.5 34.23 ? CEP COA 503 B 1 HETATM 36 C CAP COA . B . H 4 82.414 -19.166 64.456 0.5 35.6 ? CAP COA 503 B 1 HETATM 37 O OAP COA . B . H 4 81.153 -19.141 65.058 0.5 35.64 ? OAP COA 503 B 1 HETATM 38 C C9P COA . B . H 4 83.131 -20.456 64.866 0.5 37.48 ? C9P COA 503 B 1 HETATM 39 O O9P COA . B . H 4 84.283 -20.596 64.663 0.5 37.25 ? O9P COA 503 B 1 HETATM 40 N N8P COA . B . H 4 82.362 -21.51 65.561 0.5 34.73 ? N8P COA 503 B 1 HETATM 41 C C7P COA . B . H 4 82.996 -22.792 66.004 0.5 34.71 ? C7P COA 503 B 1 HETATM 42 C C6P COA . B . H 4 83.378 -23.589 64.729 0.5 33.53 ? C6P COA 503 B 1 HETATM 43 C C5P COA . B . H 4 82.174 -23.669 63.804 0.5 36.29 ? C5P COA 503 B 1 HETATM 44 O O5P COA . B . H 4 81.094 -23.955 64.256 0.5 36.25 ? O5P COA 503 B 1 HETATM 45 N N4P COA . B . H 4 82.336 -23.42 62.358 0.5 35.8 ? N4P COA 503 B 1 HETATM 46 C C3P COA . B . H 4 81.181 -23.517 61.457 0.5 34.19 ? C3P COA 503 B 1 HETATM 47 C C2P COA . B . H 4 81.439 -24.683 60.405 0.5 31.85 ? C2P COA 503 B 1 HETATM 48 S S1P COA . B . H 4 79.99 -24.771 59.308 0.5 36.23 ? S1P COA 503 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #