data_6SKO
#
_model_server_result.job_id            jv0GYzEyN5gQjkwGN7VsEA 
_model_server_result.datetime_utc      '2025-07-03 02:59:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6sko 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1500}' 
#
_entry.id    6SKO 
#
_exptl.entry_id    6SKO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6SKO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SKO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 H N N 
? 8 J N N 
? 8 L N N 
? 8 N N N 
? 8 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 582 6 SER 582 1_555 I MG MG . 6 MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
metalc ? metalc2 H O3G ANP . 6 ANP 1500 1_555 I MG MG . 6 MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc3 H O2B ANP . 6 ANP 1500 1_555 I MG MG . 6 MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
metalc ? metalc4 B OG SER 467 7 SER 467 1_555 K MG MG . 7 MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc5 J O2G ANP . 7 ANP 1500 1_555 K MG MG . 7 MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
metalc ? metalc6 J O1B ANP . 7 ANP 1500 1_555 K MG MG . 7 MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc7 L O2G ANP . 2 ANP 1500 1_555 M MG MG . 2 MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc8 L O1B ANP . 2 ANP 1500 1_555 M MG MG . 2 MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? 
metalc ? metalc9 N O2G ANP . 3 ANP 1500 1_555 O MG MG . 3 MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc10 N O2B ANP . 3 ANP 1500 1_555 O MG MG . 3 MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? 
metalc ? metalc11 N O3A ANP . 3 ANP 1500 1_555 O MG MG . 3 MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? 
metalc ? metalc12 P O3G ANP . 4 ANP 1500 1_555 Q MG MG . 4 MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? 
metalc ? metalc13 P O1B ANP . 4 ANP 1500 1_555 Q MG MG . 4 MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? 
metalc ? metalc14 P O3A ANP . 4 ANP 1500 1_555 Q MG MG . 4 MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     6SKO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 8 ANP 6 1 1500 1500 ANP ANP . 
I 9 MG 6 1 1501 1501 MG MG . 
J 8 ANP 7 1 1500 1500 ANP ANP . 
K 9 MG 7 1 1501 1501 MG MG . 
L 8 ANP 2 1 1500 1500 ANP ANP . 
M 9 MG 2 1 1501 1501 MG MG . 
N 8 ANP 3 1 1500 1500 ANP ANP . 
O 9 MG 3 1 1501 1501 MG MG . 
P 8 ANP 4 1 1500 1500 ANP ANP . 
Q 9 MG 4 1 1501 1501 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . L 8 172.886 186.58 236.361 1 27.29 ? PG ANP 1500 2 1 
HETATM 2 O O1G ANP . . . L 8 171.535 186.226 236.908 1 28.41 ? O1G ANP 1500 2 1 
HETATM 3 O O2G ANP . . . L 8 173.468 185.413 235.606 1 27.56 ? O2G ANP 1500 2 1 
HETATM 4 O O3G ANP . . . L 8 172.64 187.656 235.336 1 27.3 ? O3G ANP 1500 2 1 
HETATM 5 P PB ANP . . . L 8 174.531 186.351 238.414 1 24.86 ? PB ANP 1500 2 1 
HETATM 6 O O1B ANP . . . L 8 175.445 185.32 237.911 1 21.67 ? O1B ANP 1500 2 1 
HETATM 7 O O2B ANP . . . L 8 173.614 185.698 239.346 1 22.75 ? O2B ANP 1500 2 1 
HETATM 8 N N3B ANP . . . L 8 173.731 187.27 237.448 1 25.24 ? N3B ANP 1500 2 1 
HETATM 9 P PA ANP . . . L 8 176.226 187.955 238.542 1 23.39 ? PA ANP 1500 2 1 
HETATM 10 O O1A ANP . . . L 8 177.462 187.207 238.262 1 26.32 ? O1A ANP 1500 2 1 
HETATM 11 O O2A ANP . . . L 8 175.831 188.871 237.443 1 24.98 ? O2A ANP 1500 2 1 
HETATM 12 O O3A ANP . . . L 8 175.125 187.328 239.264 1 22.83 ? O3A ANP 1500 2 1 
HETATM 13 O O5' ANP . . . L 8 176.419 188.953 239.705 1 24.17 ? O5' ANP 1500 2 1 
HETATM 14 C C5' ANP . . . L 8 176.785 188.444 240.922 1 24.03 ? C5' ANP 1500 2 1 
HETATM 15 C C4' ANP . . . L 8 176.751 189.691 241.77 1 26.09 ? C4' ANP 1500 2 1 
HETATM 16 O O4' ANP . . . L 8 176.805 189.413 243.178 1 27.28 ? O4' ANP 1500 2 1 
HETATM 17 C C3' ANP . . . L 8 177.989 190.499 241.508 1 26.47 ? C3' ANP 1500 2 1 
HETATM 18 O O3' ANP . . . L 8 177.768 191.842 241.866 1 29.27 ? O3' ANP 1500 2 1 
HETATM 19 C C2' ANP . . . L 8 179.002 189.802 242.386 1 28.16 ? C2' ANP 1500 2 1 
HETATM 20 O O2' ANP . . . L 8 180.105 190.62 242.747 1 32.51 ? O2' ANP 1500 2 1 
HETATM 21 C C1' ANP . . . L 8 178.18 189.343 243.587 1 27.75 ? C1' ANP 1500 2 1 
HETATM 22 N N9 ANP . . . L 8 178.482 188.006 244.032 1 27.2 ? N9 ANP 1500 2 1 
HETATM 23 C C8 ANP . . . L 8 177.675 186.879 244.019 1 26.03 ? C8 ANP 1500 2 1 
HETATM 24 N N7 ANP . . . L 8 178.224 185.833 244.661 1 27.38 ? N7 ANP 1500 2 1 
HETATM 25 C C5 ANP . . . L 8 179.432 186.348 245.01 1 26.8 ? C5 ANP 1500 2 1 
HETATM 26 C C6 ANP . . . L 8 180.477 185.742 245.677 1 28.71 ? C6 ANP 1500 2 1 
HETATM 27 N N6 ANP . . . L 8 180.425 184.472 246.105 1 31.74 ? N6 ANP 1500 2 1 
HETATM 28 N N1 ANP . . . L 8 181.614 186.364 245.925 1 27.5 ? N1 ANP 1500 2 1 
HETATM 29 C C2 ANP . . . L 8 181.687 187.625 245.494 1 26.34 ? C2 ANP 1500 2 1 
HETATM 30 N N3 ANP . . . L 8 180.73 188.311 244.875 1 26.13 ? N3 ANP 1500 2 1 
HETATM 31 C C4 ANP . . . L 8 179.615 187.629 244.635 1 27.28 ? C4 ANP 1500 2 1 
HETATM 32 H HNB1 ANP . . . L 8 174.529 187.67 236.957 1 25.24 ? HNB1 ANP 1500 2 1 
HETATM 33 H "H5'1" ANP . . . L 8 176.053 187.71 241.282 1 24.03 ? "H5'1" ANP 1500 2 1 
HETATM 34 H "H5'2" ANP . . . L 8 177.774 187.977 240.833 1 24.03 ? "H5'2" ANP 1500 2 1 
HETATM 35 H H4' ANP . . . L 8 175.848 190.254 241.505 1 26.09 ? H4' ANP 1500 2 1 
HETATM 36 H H3' ANP . . . L 8 178.29 190.4 240.458 1 26.47 ? H3' ANP 1500 2 1 
HETATM 37 H HO3' ANP . . . L 8 178.281 192.002 242.678 1 29.27 ? HO3' ANP 1500 2 1 
HETATM 38 H H2' ANP . . . L 8 179.366 188.923 241.841 1 28.16 ? H2' ANP 1500 2 1 
HETATM 39 H HO2' ANP . . . L 8 179.687 191.327 243.268 1 32.51 ? HO2' ANP 1500 2 1 
HETATM 40 H H1' ANP . . . L 8 178.349 190.031 244.424 1 27.75 ? H1' ANP 1500 2 1 
HETATM 41 H H8 ANP . . . L 8 176.699 186.894 243.552 1 26.03 ? H8 ANP 1500 2 1 
HETATM 42 H HN61 ANP . . . L 8 179.701 183.923 245.66 1 31.74 ? HN61 ANP 1500 2 1 
HETATM 43 H HN62 ANP . . . L 8 181.324 184.021 246.224 1 31.74 ? HN62 ANP 1500 2 1 
HETATM 44 H H2 ANP . . . L 8 182.616 188.155 245.695 1 26.34 ? H2 ANP 1500 2 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    347 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           44 
#