data_6SL8 # _model_server_result.job_id TpczEt5jWYIZn5sABrv9Uw _model_server_result.datetime_utc '2024-12-02 21:16:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sl8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6SL8 # _exptl.entry_id 6SL8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SL8 _cell.length_a 57.979 _cell.length_b 57.979 _cell.length_c 134.461 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SL8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 45 A ASN 35 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc2 A OG SER 46 A SER 36 1_555 F NA NA . A NA 205 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.802 ? metalc ? metalc3 A O HIS 97 A HIS 87 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc4 B OXT DAB . A DAB 201 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc5 C O DAB . A DAB 202 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc6 C OXT DAB . A DAB 202 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.007 ? metalc ? metalc7 C OXT DAB . A DAB 202 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc8 D NA NA . A NA 203 1_555 H O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.118 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6SL8 _atom_sites.fract_transf_matrix[1][1] 0.017248 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017248 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007437 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DAB A 1 201 1 DAB DAB . C 2 DAB A 1 202 2 DAB DAB . D 3 NA A 1 203 1 NA NA . E 3 NA A 1 204 2 NA NA . F 3 NA A 1 205 3 NA NA . G 4 GOL A 1 206 1 GOL GOL . H 5 HOH A 1 301 148 HOH HOH . H 5 HOH A 2 302 114 HOH HOH . H 5 HOH A 3 303 133 HOH HOH . H 5 HOH A 4 304 120 HOH HOH . H 5 HOH A 5 305 5 HOH HOH . H 5 HOH A 6 306 26 HOH HOH . H 5 HOH A 7 307 135 HOH HOH . H 5 HOH A 8 308 146 HOH HOH . H 5 HOH A 9 309 92 HOH HOH . H 5 HOH A 10 310 85 HOH HOH . H 5 HOH A 11 311 83 HOH HOH . H 5 HOH A 12 312 94 HOH HOH . H 5 HOH A 13 313 147 HOH HOH . H 5 HOH A 14 314 132 HOH HOH . H 5 HOH A 15 315 127 HOH HOH . H 5 HOH A 16 316 102 HOH HOH . H 5 HOH A 17 317 82 HOH HOH . H 5 HOH A 18 318 34 HOH HOH . H 5 HOH A 19 319 78 HOH HOH . H 5 HOH A 20 320 60 HOH HOH . H 5 HOH A 21 321 81 HOH HOH . H 5 HOH A 22 322 18 HOH HOH . H 5 HOH A 23 323 22 HOH HOH . H 5 HOH A 24 324 91 HOH HOH . H 5 HOH A 25 325 123 HOH HOH . H 5 HOH A 26 326 56 HOH HOH . H 5 HOH A 27 327 68 HOH HOH . H 5 HOH A 28 328 66 HOH HOH . H 5 HOH A 29 329 99 HOH HOH . H 5 HOH A 30 330 35 HOH HOH . H 5 HOH A 31 331 9 HOH HOH . H 5 HOH A 32 332 13 HOH HOH . H 5 HOH A 33 333 73 HOH HOH . H 5 HOH A 34 334 25 HOH HOH . H 5 HOH A 35 335 52 HOH HOH . H 5 HOH A 36 336 118 HOH HOH . H 5 HOH A 37 337 53 HOH HOH . H 5 HOH A 38 338 12 HOH HOH . H 5 HOH A 39 339 32 HOH HOH . H 5 HOH A 40 340 55 HOH HOH . H 5 HOH A 41 341 86 HOH HOH . H 5 HOH A 42 342 11 HOH HOH . H 5 HOH A 43 343 19 HOH HOH . H 5 HOH A 44 344 61 HOH HOH . H 5 HOH A 45 345 36 HOH HOH . H 5 HOH A 46 346 72 HOH HOH . H 5 HOH A 47 347 44 HOH HOH . H 5 HOH A 48 348 49 HOH HOH . H 5 HOH A 49 349 71 HOH HOH . H 5 HOH A 50 350 8 HOH HOH . H 5 HOH A 51 351 70 HOH HOH . H 5 HOH A 52 352 57 HOH HOH . H 5 HOH A 53 353 21 HOH HOH . H 5 HOH A 54 354 6 HOH HOH . H 5 HOH A 55 355 64 HOH HOH . H 5 HOH A 56 356 16 HOH HOH . H 5 HOH A 57 357 122 HOH HOH . H 5 HOH A 58 358 116 HOH HOH . H 5 HOH A 59 359 98 HOH HOH . H 5 HOH A 60 360 79 HOH HOH . H 5 HOH A 61 361 17 HOH HOH . H 5 HOH A 62 362 46 HOH HOH . H 5 HOH A 63 363 33 HOH HOH . H 5 HOH A 64 364 105 HOH HOH . H 5 HOH A 65 365 125 HOH HOH . H 5 HOH A 66 366 101 HOH HOH . H 5 HOH A 67 367 29 HOH HOH . H 5 HOH A 68 368 10 HOH HOH . H 5 HOH A 69 369 2 HOH HOH . H 5 HOH A 70 370 30 HOH HOH . H 5 HOH A 71 371 20 HOH HOH . H 5 HOH A 72 372 38 HOH HOH . H 5 HOH A 73 373 39 HOH HOH . H 5 HOH A 74 374 90 HOH HOH . H 5 HOH A 75 375 59 HOH HOH . H 5 HOH A 76 376 28 HOH HOH . H 5 HOH A 77 377 42 HOH HOH . H 5 HOH A 78 378 95 HOH HOH . H 5 HOH A 79 379 69 HOH HOH . H 5 HOH A 80 380 106 HOH HOH . H 5 HOH A 81 381 136 HOH HOH . H 5 HOH A 82 382 145 HOH HOH . H 5 HOH A 83 383 87 HOH HOH . H 5 HOH A 84 384 143 HOH HOH . H 5 HOH A 85 385 67 HOH HOH . H 5 HOH A 86 386 27 HOH HOH . H 5 HOH A 87 387 43 HOH HOH . H 5 HOH A 88 388 97 HOH HOH . H 5 HOH A 89 389 139 HOH HOH . H 5 HOH A 90 390 40 HOH HOH . H 5 HOH A 91 391 112 HOH HOH . H 5 HOH A 92 392 1 HOH HOH . H 5 HOH A 93 393 47 HOH HOH . H 5 HOH A 94 394 51 HOH HOH . H 5 HOH A 95 395 113 HOH HOH . H 5 HOH A 96 396 48 HOH HOH . H 5 HOH A 97 397 63 HOH HOH . H 5 HOH A 98 398 31 HOH HOH . H 5 HOH A 99 399 109 HOH HOH . H 5 HOH A 100 400 3 HOH HOH . H 5 HOH A 101 401 23 HOH HOH . H 5 HOH A 102 402 128 HOH HOH . H 5 HOH A 103 403 58 HOH HOH . H 5 HOH A 104 404 24 HOH HOH . H 5 HOH A 105 405 115 HOH HOH . H 5 HOH A 106 406 50 HOH HOH . H 5 HOH A 107 407 140 HOH HOH . H 5 HOH A 108 408 134 HOH HOH . H 5 HOH A 109 409 37 HOH HOH . H 5 HOH A 110 410 54 HOH HOH . H 5 HOH A 111 411 45 HOH HOH . H 5 HOH A 112 412 137 HOH HOH . H 5 HOH A 113 413 142 HOH HOH . H 5 HOH A 114 414 84 HOH HOH . H 5 HOH A 115 415 80 HOH HOH . H 5 HOH A 116 416 41 HOH HOH . H 5 HOH A 117 417 4 HOH HOH . H 5 HOH A 118 418 7 HOH HOH . H 5 HOH A 119 419 126 HOH HOH . H 5 HOH A 120 420 121 HOH HOH . H 5 HOH A 121 421 62 HOH HOH . H 5 HOH A 122 422 130 HOH HOH . H 5 HOH A 123 423 14 HOH HOH . H 5 HOH A 124 424 144 HOH HOH . H 5 HOH A 125 425 93 HOH HOH . H 5 HOH A 126 426 138 HOH HOH . H 5 HOH A 127 427 117 HOH HOH . H 5 HOH A 128 428 119 HOH HOH . H 5 HOH A 129 429 96 HOH HOH . H 5 HOH A 130 430 77 HOH HOH . H 5 HOH A 131 431 103 HOH HOH . H 5 HOH A 132 432 111 HOH HOH . H 5 HOH A 133 433 100 HOH HOH . H 5 HOH A 134 434 15 HOH HOH . H 5 HOH A 135 435 141 HOH HOH . H 5 HOH A 136 436 129 HOH HOH . H 5 HOH A 137 437 110 HOH HOH . H 5 HOH A 138 438 89 HOH HOH . H 5 HOH A 139 439 131 HOH HOH . H 5 HOH A 140 440 74 HOH HOH . H 5 HOH A 141 441 65 HOH HOH . H 5 HOH A 142 442 76 HOH HOH . H 5 HOH A 143 443 108 HOH HOH . H 5 HOH A 144 444 88 HOH HOH . H 5 HOH A 145 445 107 HOH HOH . H 5 HOH A 146 446 104 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -3.706 _atom_site.Cartn_y -6.873 _atom_site.Cartn_z -23.719 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #