data_6SLA # _model_server_result.job_id Kpm7jOMO_jaDnfxvl0A4OA _model_server_result.datetime_utc '2025-02-05 11:51:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sla # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 6SLA # _exptl.entry_id 6SLA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 903.682 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 2-(2,5-dihydrooxepin-7-yl)ethanethioate' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.482 _cell.angle_gamma 90 _cell.entry_id 6SLA _cell.length_a 76.156 _cell.length_b 73.05 _cell.length_c 130.304 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SLA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,M,N,O 1 1 D,E,F,J,K,L,P,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C29 H44 N7 O18 P3 S' _chem_comp.formula_weight 903.682 _chem_comp.id LHQ _chem_comp.mon_nstd_flag . _chem_comp.name '~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 2-(2,5-dihydrooxepin-7-yl)ethanethioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C13 LHQ doub 181 n n C13 C12 LHQ sing 182 n n C13 S1 LHQ sing 183 n n C12 C11 LHQ sing 184 n n S1 C14 LHQ sing 185 n n C14 C15 LHQ sing 186 n n C11 C6 LHQ doub 187 n n C11 O1 LHQ sing 188 n n C23 C21 LHQ sing 189 n n C6 C7 LHQ sing 190 n n O1 C10 LHQ sing 191 n n C22 C21 LHQ sing 192 n n C7 C8 LHQ sing 193 n n N3 C15 LHQ sing 194 n n N3 C16 LHQ sing 195 n n C17 C16 LHQ sing 196 n n C17 C18 LHQ sing 197 n n C21 C24 LHQ sing 198 n n C21 C20 LHQ sing 199 n n C16 O3 LHQ doub 200 n n C10 C9 LHQ sing 201 n n C8 C9 LHQ doub 202 n n O4 C19 LHQ doub 203 n n C24 O6 LHQ sing 204 n n C19 N4 LHQ sing 205 n n C19 C20 LHQ sing 206 n n O6 P1 LHQ sing 207 n n N4 C18 LHQ sing 208 n n O7 P1 LHQ doub 209 n n C20 O5 LHQ sing 210 n n P1 O8 LHQ sing 211 n n P1 O9 LHQ sing 212 n n N7 C3 LHQ sing 213 n n O9 P2 LHQ sing 214 n n N6 C5 LHQ doub 215 n y N6 C2 LHQ sing 216 n y C3 C2 LHQ doub 217 n y C3 N1 LHQ sing 218 n y O10 P2 LHQ doub 219 n n C5 N5 LHQ sing 220 n y C2 C1 LHQ sing 221 n y P2 O12 LHQ sing 222 n n P2 O11 LHQ sing 223 n n N1 C4 LHQ doub 224 n y N5 C1 LHQ sing 225 n y N5 C29 LHQ sing 226 n n O12 C25 LHQ sing 227 n n C1 N2 LHQ doub 228 n y C25 C26 LHQ sing 229 n n C4 N2 LHQ sing 230 n y O13 C29 LHQ sing 231 n n O13 C26 LHQ sing 232 n n C29 C28 LHQ sing 233 n n C26 C27 LHQ sing 234 n n C28 C27 LHQ sing 235 n n C28 O18 LHQ sing 236 n n C27 O14 LHQ sing 237 n n O14 P3 LHQ sing 238 n n O17 P3 LHQ doub 239 n n P3 O16 LHQ sing 240 n n P3 O15 LHQ sing 241 n n C4 H1 LHQ sing 242 n n C5 H2 LHQ sing 243 n n C6 H3 LHQ sing 244 n n C7 H4 LHQ sing 245 n n C7 H5 LHQ sing 246 n n C8 H6 LHQ sing 247 n n C9 H7 LHQ sing 248 n n C10 H8 LHQ sing 249 n n C10 H9 LHQ sing 250 n n C12 H10 LHQ sing 251 n n C12 H11 LHQ sing 252 n n C14 H12 LHQ sing 253 n n C14 H13 LHQ sing 254 n n C15 H14 LHQ sing 255 n n C15 H15 LHQ sing 256 n n N3 H16 LHQ sing 257 n n C17 H17 LHQ sing 258 n n C17 H18 LHQ sing 259 n n C18 H19 LHQ sing 260 n n C18 H20 LHQ sing 261 n n N4 H21 LHQ sing 262 n n C20 H22 LHQ sing 263 n n O5 H23 LHQ sing 264 n n C22 H24 LHQ sing 265 n n C22 H25 LHQ sing 266 n n C22 H26 LHQ sing 267 n n C23 H27 LHQ sing 268 n n C23 H28 LHQ sing 269 n n C23 H29 LHQ sing 270 n n C24 H30 LHQ sing 271 n n C24 H31 LHQ sing 272 n n O8 H32 LHQ sing 273 n n O11 H33 LHQ sing 274 n n C25 H34 LHQ sing 275 n n C25 H35 LHQ sing 276 n n C26 H36 LHQ sing 277 n n C27 H37 LHQ sing 278 n n O15 H38 LHQ sing 279 n n O16 H39 LHQ sing 280 n n C28 H40 LHQ sing 281 n n O18 H41 LHQ sing 282 n n C29 H42 LHQ sing 283 n n N7 H43 LHQ sing 284 n n N7 H44 LHQ sing 285 n n # _atom_sites.entry_id 6SLA _atom_sites.fract_transf_matrix[1][1] 0.013131 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000569 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007682 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 LHQ AAA 1 301 301 LHQ OEA . H 2 LHQ BBB 1 301 301 LHQ OEA . I 2 LHQ CCC 1 301 301 LHQ OEA . J 2 LHQ DDD 1 301 301 LHQ OEA . K 2 LHQ EEE 1 301 301 LHQ OEA . L 2 LHQ FFF 1 301 301 LHQ OEA . M 3 HOH AAA 1 401 43 HOH HOH . M 3 HOH AAA 2 402 11 HOH HOH . M 3 HOH AAA 3 403 56 HOH HOH . M 3 HOH AAA 4 404 20 HOH HOH . M 3 HOH AAA 5 405 38 HOH HOH . M 3 HOH AAA 6 406 53 HOH HOH . M 3 HOH AAA 7 407 27 HOH HOH . M 3 HOH AAA 8 408 22 HOH HOH . M 3 HOH AAA 9 409 54 HOH HOH . M 3 HOH AAA 10 410 58 HOH HOH . M 3 HOH AAA 11 411 34 HOH HOH . M 3 HOH AAA 12 412 12 HOH HOH . M 3 HOH AAA 13 413 40 HOH HOH . M 3 HOH AAA 14 414 51 HOH HOH . M 3 HOH AAA 15 415 8 HOH HOH . M 3 HOH AAA 16 416 45 HOH HOH . M 3 HOH AAA 17 417 14 HOH HOH . M 3 HOH AAA 18 418 52 HOH HOH . N 3 HOH BBB 1 401 25 HOH HOH . N 3 HOH BBB 2 402 30 HOH HOH . N 3 HOH BBB 3 403 46 HOH HOH . N 3 HOH BBB 4 404 1 HOH HOH . N 3 HOH BBB 5 405 48 HOH HOH . N 3 HOH BBB 6 406 47 HOH HOH . N 3 HOH BBB 7 407 16 HOH HOH . N 3 HOH BBB 8 408 13 HOH HOH . N 3 HOH BBB 9 409 15 HOH HOH . N 3 HOH BBB 10 410 50 HOH HOH . N 3 HOH BBB 11 411 64 HOH HOH . N 3 HOH BBB 12 412 60 HOH HOH . O 3 HOH CCC 1 401 21 HOH HOH . O 3 HOH CCC 2 402 17 HOH HOH . O 3 HOH CCC 3 403 42 HOH HOH . O 3 HOH CCC 4 404 63 HOH HOH . O 3 HOH CCC 5 405 35 HOH HOH . O 3 HOH CCC 6 406 62 HOH HOH . O 3 HOH CCC 7 407 55 HOH HOH . O 3 HOH CCC 8 408 29 HOH HOH . P 3 HOH DDD 1 401 36 HOH HOH . P 3 HOH DDD 2 402 28 HOH HOH . P 3 HOH DDD 3 403 26 HOH HOH . P 3 HOH DDD 4 404 10 HOH HOH . P 3 HOH DDD 5 405 33 HOH HOH . P 3 HOH DDD 6 406 24 HOH HOH . P 3 HOH DDD 7 407 19 HOH HOH . P 3 HOH DDD 8 408 2 HOH HOH . P 3 HOH DDD 9 409 9 HOH HOH . P 3 HOH DDD 10 410 39 HOH HOH . Q 3 HOH EEE 1 401 31 HOH HOH . Q 3 HOH EEE 2 402 7 HOH HOH . Q 3 HOH EEE 3 403 23 HOH HOH . Q 3 HOH EEE 4 404 59 HOH HOH . Q 3 HOH EEE 5 405 49 HOH HOH . Q 3 HOH EEE 6 406 44 HOH HOH . Q 3 HOH EEE 7 407 3 HOH HOH . R 3 HOH FFF 1 401 57 HOH HOH . R 3 HOH FFF 2 402 32 HOH HOH . R 3 HOH FFF 3 403 4 HOH HOH . R 3 HOH FFF 4 404 6 HOH HOH . R 3 HOH FFF 5 405 18 HOH HOH . R 3 HOH FFF 6 406 37 HOH HOH . R 3 HOH FFF 7 407 5 HOH HOH . R 3 HOH FFF 8 408 61 HOH HOH . R 3 HOH FFF 9 409 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LHQ . . . G 2 0.341 14.419 89.733 1 76.73 ? C1 LHQ 301 AAA 1 HETATM 2 C C2 LHQ . . . G 2 0.945 14.121 88.56 1 71.3 ? C2 LHQ 301 AAA 1 HETATM 3 C C3 LHQ . . . G 2 1.425 12.878 88.326 1 60.69 ? C3 LHQ 301 AAA 1 HETATM 4 C C4 LHQ . . . G 2 0.709 12.216 90.466 1 68.19 ? C4 LHQ 301 AAA 1 HETATM 5 C C5 LHQ . . . G 2 0.326 16.197 88.522 1 71.2 ? C5 LHQ 301 AAA 1 HETATM 6 N N1 LHQ . . . G 2 1.328 11.921 89.243 1 60.5 ? N1 LHQ 301 AAA 1 HETATM 7 N N2 LHQ . . . G 2 0.208 13.486 90.693 1 69.83 ? N2 LHQ 301 AAA 1 HETATM 8 C C6 LHQ . . . G 2 4.203 4.164 83.583 1 88.92 ? C6 LHQ 301 AAA 1 HETATM 9 C C7 LHQ . . . G 2 4.634 2.97 84.159 1 96.39 ? C7 LHQ 301 AAA 1 HETATM 10 C C8 LHQ . . . G 2 5.782 2.628 84.868 1 104.3 ? C8 LHQ 301 AAA 1 HETATM 11 C C9 LHQ . . . G 2 6.852 3.43 85.199 1 104.83 ? C9 LHQ 301 AAA 1 HETATM 12 C C10 LHQ . . . G 2 6.955 4.766 84.856 1 112.53 ? C10 LHQ 301 AAA 1 HETATM 13 O O1 LHQ . . . G 2 5.94 5.711 84.011 1 100.2 ? O1 LHQ 301 AAA 1 HETATM 14 C C11 LHQ . . . G 2 4.78 5.427 83.485 1 86.78 ? C11 LHQ 301 AAA 1 HETATM 15 C C12 LHQ . . . G 2 3.997 6.373 82.783 1 68.21 ? C12 LHQ 301 AAA 1 HETATM 16 C C13 LHQ . . . G 2 4.274 7.91 82.586 1 59.89 ? C13 LHQ 301 AAA 1 HETATM 17 O O2 LHQ . . . G 2 3.421 8.563 81.985 1 62.78 ? O2 LHQ 301 AAA 1 HETATM 18 S S1 LHQ . . . G 2 5.876 8.709 83.127 1 55.36 ? S1 LHQ 301 AAA 1 HETATM 19 C C14 LHQ . . . G 2 5.472 10.506 83.209 1 56.07 ? C14 LHQ 301 AAA 1 HETATM 20 C C15 LHQ . . . G 2 4.506 10.782 84.372 1 58.5 ? C15 LHQ 301 AAA 1 HETATM 21 N N3 LHQ . . . G 2 3.947 12.125 84.295 1 59.8 ? N3 LHQ 301 AAA 1 HETATM 22 C C16 LHQ . . . G 2 4.614 13.242 84.655 1 64.7 ? C16 LHQ 301 AAA 1 HETATM 23 O O3 LHQ . . . G 2 5.787 13.258 85.054 1 64.53 ? O3 LHQ 301 AAA 1 HETATM 24 C C17 LHQ . . . G 2 3.768 14.527 84.49 1 63.56 ? C17 LHQ 301 AAA 1 HETATM 25 C C18 LHQ . . . G 2 3.622 15.35 85.797 1 68.72 ? C18 LHQ 301 AAA 1 HETATM 26 N N4 LHQ . . . G 2 4.42 16.532 85.501 1 77.46 ? N4 LHQ 301 AAA 1 HETATM 27 C C19 LHQ . . . G 2 4.114 17.84 85.387 1 81.22 ? C19 LHQ 301 AAA 1 HETATM 28 O O4 LHQ . . . G 2 4.983 18.613 85.016 1 84.41 ? O4 LHQ 301 AAA 1 HETATM 29 C C20 LHQ . . . G 2 2.752 18.463 85.833 1 78.98 ? C20 LHQ 301 AAA 1 HETATM 30 O O5 LHQ . . . G 2 2.109 17.801 86.941 1 76.42 ? O5 LHQ 301 AAA 1 HETATM 31 C C21 LHQ . . . G 2 1.78 18.754 84.652 1 74.1 ? C21 LHQ 301 AAA 1 HETATM 32 C C22 LHQ . . . G 2 1.17 17.491 84.024 1 79.39 ? C22 LHQ 301 AAA 1 HETATM 33 C C23 LHQ . . . G 2 2.507 19.548 83.535 1 59.83 ? C23 LHQ 301 AAA 1 HETATM 34 C C24 LHQ . . . G 2 0.64 19.568 85.236 1 71.99 ? C24 LHQ 301 AAA 1 HETATM 35 O O6 LHQ . . . G 2 1.128 20.909 85.414 1 77.49 ? O6 LHQ 301 AAA 1 HETATM 36 P P1 LHQ . . . G 2 0.371 22.03 86.308 1 82.54 ? P1 LHQ 301 AAA 1 HETATM 37 O O7 LHQ . . . G 2 -0.883 22.423 85.584 1 80.1 ? O7 LHQ 301 AAA 1 HETATM 38 O O8 LHQ . . . G 2 1.416 23.032 86.689 1 81.23 ? O8 LHQ 301 AAA 1 HETATM 39 O O9 LHQ . . . G 2 -0.171 21.256 87.653 1 92.14 ? O9 LHQ 301 AAA 1 HETATM 40 P P2 LHQ . . . G 2 0.789 20.958 88.916 1 96.2 ? P2 LHQ 301 AAA 1 HETATM 41 O O10 LHQ . . . G 2 2.09 20.376 88.433 1 88.53 ? O10 LHQ 301 AAA 1 HETATM 42 O O11 LHQ . . . G 2 0.808 22.171 89.773 1 110.61 ? O11 LHQ 301 AAA 1 HETATM 43 O O12 LHQ . . . G 2 -0.079 19.816 89.728 1 87.85 ? O12 LHQ 301 AAA 1 HETATM 44 C C25 LHQ . . . G 2 -1.507 19.791 90.019 1 78.77 ? C25 LHQ 301 AAA 1 HETATM 45 C C26 LHQ . . . G 2 -1.846 18.611 91.013 1 87.6 ? C26 LHQ 301 AAA 1 HETATM 46 O O13 LHQ . . . G 2 -1.986 17.216 90.513 1 77.92 ? O13 LHQ 301 AAA 1 HETATM 47 C C27 LHQ . . . G 2 -0.736 18.458 92.085 1 100.98 ? C27 LHQ 301 AAA 1 HETATM 48 O O14 LHQ . . . G 2 -1.312 17.853 93.281 1 110.79 ? O14 LHQ 301 AAA 1 HETATM 49 P P3 LHQ . . . G 2 -1.515 18.602 94.694 1 102.69 ? P3 LHQ 301 AAA 1 HETATM 50 O O15 LHQ . . . G 2 -0.277 18.257 95.434 1 102.04 ? O15 LHQ 301 AAA 1 HETATM 51 O O16 LHQ . . . G 2 -2.751 17.909 95.098 1 95.05 ? O16 LHQ 301 AAA 1 HETATM 52 O O17 LHQ . . . G 2 -1.662 20.046 94.368 1 86.92 ? O17 LHQ 301 AAA 1 HETATM 53 C C28 LHQ . . . G 2 0.238 17.503 91.389 1 89.59 ? C28 LHQ 301 AAA 1 HETATM 54 O O18 LHQ . . . G 2 1.238 16.941 92.282 1 89.83 ? O18 LHQ 301 AAA 1 HETATM 55 C C29 LHQ . . . G 2 -0.744 16.456 90.822 1 80.35 ? C29 LHQ 301 AAA 1 HETATM 56 N N5 LHQ . . . G 2 -0.051 15.7 89.7 1 77.82 ? N5 LHQ 301 AAA 1 HETATM 57 N N6 LHQ . . . G 2 0.929 15.24 87.825 1 64.46 ? N6 LHQ 301 AAA 1 HETATM 58 N N7 LHQ . . . G 2 2.015 12.626 87.165 1 49.82 ? N7 LHQ 301 AAA 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 58 #