data_6SLA # _model_server_result.job_id -yzUbIFTpdSFNWxBlSFPjw _model_server_result.datetime_utc '2025-02-05 11:48:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sla # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 6SLA # _exptl.entry_id 6SLA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 903.682 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 2-(2,5-dihydrooxepin-7-yl)ethanethioate' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.482 _cell.angle_gamma 90 _cell.entry_id 6SLA _cell.length_a 76.156 _cell.length_b 73.05 _cell.length_c 130.304 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SLA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,M,N,O 1 1 D,E,F,J,K,L,P,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C29 H44 N7 O18 P3 S' _chem_comp.formula_weight 903.682 _chem_comp.id LHQ _chem_comp.mon_nstd_flag . _chem_comp.name '~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 2-(2,5-dihydrooxepin-7-yl)ethanethioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C13 LHQ doub 181 n n C13 C12 LHQ sing 182 n n C13 S1 LHQ sing 183 n n C12 C11 LHQ sing 184 n n S1 C14 LHQ sing 185 n n C14 C15 LHQ sing 186 n n C11 C6 LHQ doub 187 n n C11 O1 LHQ sing 188 n n C23 C21 LHQ sing 189 n n C6 C7 LHQ sing 190 n n O1 C10 LHQ sing 191 n n C22 C21 LHQ sing 192 n n C7 C8 LHQ sing 193 n n N3 C15 LHQ sing 194 n n N3 C16 LHQ sing 195 n n C17 C16 LHQ sing 196 n n C17 C18 LHQ sing 197 n n C21 C24 LHQ sing 198 n n C21 C20 LHQ sing 199 n n C16 O3 LHQ doub 200 n n C10 C9 LHQ sing 201 n n C8 C9 LHQ doub 202 n n O4 C19 LHQ doub 203 n n C24 O6 LHQ sing 204 n n C19 N4 LHQ sing 205 n n C19 C20 LHQ sing 206 n n O6 P1 LHQ sing 207 n n N4 C18 LHQ sing 208 n n O7 P1 LHQ doub 209 n n C20 O5 LHQ sing 210 n n P1 O8 LHQ sing 211 n n P1 O9 LHQ sing 212 n n N7 C3 LHQ sing 213 n n O9 P2 LHQ sing 214 n n N6 C5 LHQ doub 215 n y N6 C2 LHQ sing 216 n y C3 C2 LHQ doub 217 n y C3 N1 LHQ sing 218 n y O10 P2 LHQ doub 219 n n C5 N5 LHQ sing 220 n y C2 C1 LHQ sing 221 n y P2 O12 LHQ sing 222 n n P2 O11 LHQ sing 223 n n N1 C4 LHQ doub 224 n y N5 C1 LHQ sing 225 n y N5 C29 LHQ sing 226 n n O12 C25 LHQ sing 227 n n C1 N2 LHQ doub 228 n y C25 C26 LHQ sing 229 n n C4 N2 LHQ sing 230 n y O13 C29 LHQ sing 231 n n O13 C26 LHQ sing 232 n n C29 C28 LHQ sing 233 n n C26 C27 LHQ sing 234 n n C28 C27 LHQ sing 235 n n C28 O18 LHQ sing 236 n n C27 O14 LHQ sing 237 n n O14 P3 LHQ sing 238 n n O17 P3 LHQ doub 239 n n P3 O16 LHQ sing 240 n n P3 O15 LHQ sing 241 n n C4 H1 LHQ sing 242 n n C5 H2 LHQ sing 243 n n C6 H3 LHQ sing 244 n n C7 H4 LHQ sing 245 n n C7 H5 LHQ sing 246 n n C8 H6 LHQ sing 247 n n C9 H7 LHQ sing 248 n n C10 H8 LHQ sing 249 n n C10 H9 LHQ sing 250 n n C12 H10 LHQ sing 251 n n C12 H11 LHQ sing 252 n n C14 H12 LHQ sing 253 n n C14 H13 LHQ sing 254 n n C15 H14 LHQ sing 255 n n C15 H15 LHQ sing 256 n n N3 H16 LHQ sing 257 n n C17 H17 LHQ sing 258 n n C17 H18 LHQ sing 259 n n C18 H19 LHQ sing 260 n n C18 H20 LHQ sing 261 n n N4 H21 LHQ sing 262 n n C20 H22 LHQ sing 263 n n O5 H23 LHQ sing 264 n n C22 H24 LHQ sing 265 n n C22 H25 LHQ sing 266 n n C22 H26 LHQ sing 267 n n C23 H27 LHQ sing 268 n n C23 H28 LHQ sing 269 n n C23 H29 LHQ sing 270 n n C24 H30 LHQ sing 271 n n C24 H31 LHQ sing 272 n n O8 H32 LHQ sing 273 n n O11 H33 LHQ sing 274 n n C25 H34 LHQ sing 275 n n C25 H35 LHQ sing 276 n n C26 H36 LHQ sing 277 n n C27 H37 LHQ sing 278 n n O15 H38 LHQ sing 279 n n O16 H39 LHQ sing 280 n n C28 H40 LHQ sing 281 n n O18 H41 LHQ sing 282 n n C29 H42 LHQ sing 283 n n N7 H43 LHQ sing 284 n n N7 H44 LHQ sing 285 n n # _atom_sites.entry_id 6SLA _atom_sites.fract_transf_matrix[1][1] 0.013131 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000569 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007682 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 LHQ AAA 1 301 301 LHQ OEA . H 2 LHQ BBB 1 301 301 LHQ OEA . I 2 LHQ CCC 1 301 301 LHQ OEA . J 2 LHQ DDD 1 301 301 LHQ OEA . K 2 LHQ EEE 1 301 301 LHQ OEA . L 2 LHQ FFF 1 301 301 LHQ OEA . M 3 HOH AAA 1 401 43 HOH HOH . M 3 HOH AAA 2 402 11 HOH HOH . M 3 HOH AAA 3 403 56 HOH HOH . M 3 HOH AAA 4 404 20 HOH HOH . M 3 HOH AAA 5 405 38 HOH HOH . M 3 HOH AAA 6 406 53 HOH HOH . M 3 HOH AAA 7 407 27 HOH HOH . M 3 HOH AAA 8 408 22 HOH HOH . M 3 HOH AAA 9 409 54 HOH HOH . M 3 HOH AAA 10 410 58 HOH HOH . M 3 HOH AAA 11 411 34 HOH HOH . M 3 HOH AAA 12 412 12 HOH HOH . M 3 HOH AAA 13 413 40 HOH HOH . M 3 HOH AAA 14 414 51 HOH HOH . M 3 HOH AAA 15 415 8 HOH HOH . M 3 HOH AAA 16 416 45 HOH HOH . M 3 HOH AAA 17 417 14 HOH HOH . M 3 HOH AAA 18 418 52 HOH HOH . N 3 HOH BBB 1 401 25 HOH HOH . N 3 HOH BBB 2 402 30 HOH HOH . N 3 HOH BBB 3 403 46 HOH HOH . N 3 HOH BBB 4 404 1 HOH HOH . N 3 HOH BBB 5 405 48 HOH HOH . N 3 HOH BBB 6 406 47 HOH HOH . N 3 HOH BBB 7 407 16 HOH HOH . N 3 HOH BBB 8 408 13 HOH HOH . N 3 HOH BBB 9 409 15 HOH HOH . N 3 HOH BBB 10 410 50 HOH HOH . N 3 HOH BBB 11 411 64 HOH HOH . N 3 HOH BBB 12 412 60 HOH HOH . O 3 HOH CCC 1 401 21 HOH HOH . O 3 HOH CCC 2 402 17 HOH HOH . O 3 HOH CCC 3 403 42 HOH HOH . O 3 HOH CCC 4 404 63 HOH HOH . O 3 HOH CCC 5 405 35 HOH HOH . O 3 HOH CCC 6 406 62 HOH HOH . O 3 HOH CCC 7 407 55 HOH HOH . O 3 HOH CCC 8 408 29 HOH HOH . P 3 HOH DDD 1 401 36 HOH HOH . P 3 HOH DDD 2 402 28 HOH HOH . P 3 HOH DDD 3 403 26 HOH HOH . P 3 HOH DDD 4 404 10 HOH HOH . P 3 HOH DDD 5 405 33 HOH HOH . P 3 HOH DDD 6 406 24 HOH HOH . P 3 HOH DDD 7 407 19 HOH HOH . P 3 HOH DDD 8 408 2 HOH HOH . P 3 HOH DDD 9 409 9 HOH HOH . P 3 HOH DDD 10 410 39 HOH HOH . Q 3 HOH EEE 1 401 31 HOH HOH . Q 3 HOH EEE 2 402 7 HOH HOH . Q 3 HOH EEE 3 403 23 HOH HOH . Q 3 HOH EEE 4 404 59 HOH HOH . Q 3 HOH EEE 5 405 49 HOH HOH . Q 3 HOH EEE 6 406 44 HOH HOH . Q 3 HOH EEE 7 407 3 HOH HOH . R 3 HOH FFF 1 401 57 HOH HOH . R 3 HOH FFF 2 402 32 HOH HOH . R 3 HOH FFF 3 403 4 HOH HOH . R 3 HOH FFF 4 404 6 HOH HOH . R 3 HOH FFF 5 405 18 HOH HOH . R 3 HOH FFF 6 406 37 HOH HOH . R 3 HOH FFF 7 407 5 HOH HOH . R 3 HOH FFF 8 408 61 HOH HOH . R 3 HOH FFF 9 409 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LHQ . . . J 2 2.93 -24.879 25.357 1 103.96 ? C1 LHQ 301 DDD 1 HETATM 2 C C2 LHQ . . . J 2 3.653 -24.317 24.362 1 107.62 ? C2 LHQ 301 DDD 1 HETATM 3 C C3 LHQ . . . J 2 3.786 -22.98 24.294 1 100.77 ? C3 LHQ 301 DDD 1 HETATM 4 C C4 LHQ . . . J 2 2.442 -22.736 26.246 1 88.44 ? C4 LHQ 301 DDD 1 HETATM 5 C C5 LHQ . . . J 2 3.72 -26.461 24.094 1 103.15 ? C5 LHQ 301 DDD 1 HETATM 6 N N1 LHQ . . . J 2 3.2 -22.173 25.203 1 95.16 ? N1 LHQ 301 DDD 1 HETATM 7 N N2 LHQ . . . J 2 2.329 -24.125 26.305 1 79.51 ? N2 LHQ 301 DDD 1 HETATM 8 C C6 LHQ . . . J 2 7.335 -13.282 21.347 1 101.03 ? C6 LHQ 301 DDD 1 HETATM 9 C C7 LHQ . . . J 2 6.704 -12.081 21.698 1 105.88 ? C7 LHQ 301 DDD 1 HETATM 10 C C8 LHQ . . . J 2 5.431 -11.574 21.425 1 102.87 ? C8 LHQ 301 DDD 1 HETATM 11 C C9 LHQ . . . J 2 4.403 -12.166 20.711 1 105.36 ? C9 LHQ 301 DDD 1 HETATM 12 C C10 LHQ . . . J 2 4.428 -13.424 20.112 1 114.75 ? C10 LHQ 301 DDD 1 HETATM 13 O O1 LHQ . . . J 2 5.643 -14.531 20.038 1 104.01 ? O1 LHQ 301 DDD 1 HETATM 14 C C11 LHQ . . . J 2 6.925 -14.41 20.615 1 99.65 ? C11 LHQ 301 DDD 1 HETATM 15 C C12 LHQ . . . J 2 7.921 -15.414 20.539 1 82.53 ? C12 LHQ 301 DDD 1 HETATM 16 C C13 LHQ . . . J 2 7.84 -16.856 19.909 1 76.32 ? C13 LHQ 301 DDD 1 HETATM 17 O O2 LHQ . . . J 2 8.849 -17.552 20.021 1 81.31 ? O2 LHQ 301 DDD 1 HETATM 18 S S1 LHQ . . . J 2 6.308 -17.504 18.931 1 73.47 ? S1 LHQ 301 DDD 1 HETATM 19 C C14 LHQ . . . J 2 6.562 -19.311 18.906 1 58.14 ? C14 LHQ 301 DDD 1 HETATM 20 C C15 LHQ . . . J 2 5.908 -19.972 20.114 1 58.74 ? C15 LHQ 301 DDD 1 HETATM 21 N N3 LHQ . . . J 2 6.213 -21.395 20.156 1 55.2 ? N3 LHQ 301 DDD 1 HETATM 22 C C16 LHQ . . . J 2 5.542 -22.284 19.409 1 64.13 ? C16 LHQ 301 DDD 1 HETATM 23 O O3 LHQ . . . J 2 4.696 -21.965 18.578 1 60.56 ? O3 LHQ 301 DDD 1 HETATM 24 C C17 LHQ . . . J 2 6.027 -23.745 19.538 1 73.67 ? C17 LHQ 301 DDD 1 HETATM 25 C C18 LHQ . . . J 2 5.151 -24.701 20.376 1 71.93 ? C18 LHQ 301 DDD 1 HETATM 26 N N4 LHQ . . . J 2 4.459 -25.525 19.379 1 80.28 ? N4 LHQ 301 DDD 1 HETATM 27 C C19 LHQ . . . J 2 4.193 -26.861 19.259 1 82.55 ? C19 LHQ 301 DDD 1 HETATM 28 O O4 LHQ . . . J 2 3.542 -27.25 18.284 1 92.7 ? O4 LHQ 301 DDD 1 HETATM 29 C C20 LHQ . . . J 2 4.579 -27.921 20.339 1 78.91 ? C20 LHQ 301 DDD 1 HETATM 30 O O5 LHQ . . . J 2 4.348 -27.46 21.666 1 76.07 ? O5 LHQ 301 DDD 1 HETATM 31 C C21 LHQ . . . J 2 6.015 -28.499 20.184 1 91.32 ? C21 LHQ 301 DDD 1 HETATM 32 C C22 LHQ . . . J 2 7.057 -27.484 20.661 1 95.47 ? C22 LHQ 301 DDD 1 HETATM 33 C C23 LHQ . . . J 2 6.303 -28.867 18.706 1 83.62 ? C23 LHQ 301 DDD 1 HETATM 34 C C24 LHQ . . . J 2 6.185 -29.714 21.115 1 91.34 ? C24 LHQ 301 DDD 1 HETATM 35 O O6 LHQ . . . J 2 5.158 -30.703 20.939 1 106.44 ? O6 LHQ 301 DDD 1 HETATM 36 P P1 LHQ . . . J 2 5.07 -32.072 21.845 1 108.08 ? P1 LHQ 301 DDD 1 HETATM 37 O O7 LHQ . . . J 2 6.4 -32.47 22.399 1 95.15 ? O7 LHQ 301 DDD 1 HETATM 38 O O8 LHQ . . . J 2 4.224 -33.055 21.11 1 109.32 ? O8 LHQ 301 DDD 1 HETATM 39 O O9 LHQ . . . J 2 4.192 -31.599 23.074 1 108.44 ? O9 LHQ 301 DDD 1 HETATM 40 P P2 LHQ . . . J 2 2.67 -31.258 22.8 1 102.99 ? P2 LHQ 301 DDD 1 HETATM 41 O O10 LHQ . . . J 2 2.579 -30.453 21.552 1 80.35 ? O10 LHQ 301 DDD 1 HETATM 42 O O11 LHQ . . . J 2 1.916 -32.535 22.881 1 107.33 ? O11 LHQ 301 DDD 1 HETATM 43 O O12 LHQ . . . J 2 2.364 -30.343 24.128 1 75.56 ? O12 LHQ 301 DDD 1 HETATM 44 C C25 LHQ . . . J 2 2.728 -30.712 25.462 1 87.05 ? C25 LHQ 301 DDD 1 HETATM 45 C C26 LHQ . . . J 2 2.306 -29.607 26.468 1 102.54 ? C26 LHQ 301 DDD 1 HETATM 46 O O13 LHQ . . . J 2 3.15 -28.398 26.433 1 108.76 ? O13 LHQ 301 DDD 1 HETATM 47 C C27 LHQ . . . J 2 0.87 -29.107 26.207 1 111.51 ? C27 LHQ 301 DDD 1 HETATM 48 O O14 LHQ . . . J 2 0.272 -28.69 27.474 1 119.22 ? O14 LHQ 301 DDD 1 HETATM 49 P P3 LHQ . . . J 2 -0.921 -29.497 28.239 1 112.66 ? P3 LHQ 301 DDD 1 HETATM 50 O O15 LHQ . . . J 2 -1.32 -28.493 29.239 1 109.71 ? O15 LHQ 301 DDD 1 HETATM 51 O O16 LHQ . . . J 2 -0.308 -30.708 28.796 1 95.19 ? O16 LHQ 301 DDD 1 HETATM 52 O O17 LHQ . . . J 2 -1.908 -29.709 27.115 1 93.74 ? O17 LHQ 301 DDD 1 HETATM 53 C C28 LHQ . . . J 2 1.141 -27.915 25.29 1 110.3 ? C28 LHQ 301 DDD 1 HETATM 54 O O18 LHQ . . . J 2 -0.009 -27.037 25.07 1 100.21 ? O18 LHQ 301 DDD 1 HETATM 55 C C29 LHQ . . . J 2 2.296 -27.248 26.051 1 110.77 ? C29 LHQ 301 DDD 1 HETATM 56 N N5 LHQ . . . J 2 2.977 -26.209 25.181 1 113.67 ? N5 LHQ 301 DDD 1 HETATM 57 N N6 LHQ . . . J 2 4.136 -25.304 23.587 1 103.37 ? N6 LHQ 301 DDD 1 HETATM 58 N N7 LHQ . . . J 2 4.523 -22.499 23.283 1 89.15 ? N7 LHQ 301 DDD 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 58 #