data_6SLA # _model_server_result.job_id '_hjXhT7Ctb5uzyfo5Rc9EA' _model_server_result.datetime_utc '2025-02-05 11:41:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sla # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 6SLA # _exptl.entry_id 6SLA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 903.682 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 2-(2,5-dihydrooxepin-7-yl)ethanethioate' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.482 _cell.angle_gamma 90 _cell.entry_id 6SLA _cell.length_a 76.156 _cell.length_b 73.05 _cell.length_c 130.304 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SLA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,M,N,O 1 1 D,E,F,J,K,L,P,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C29 H44 N7 O18 P3 S' _chem_comp.formula_weight 903.682 _chem_comp.id LHQ _chem_comp.mon_nstd_flag . _chem_comp.name '~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 2-(2,5-dihydrooxepin-7-yl)ethanethioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C13 LHQ doub 181 n n C13 C12 LHQ sing 182 n n C13 S1 LHQ sing 183 n n C12 C11 LHQ sing 184 n n S1 C14 LHQ sing 185 n n C14 C15 LHQ sing 186 n n C11 C6 LHQ doub 187 n n C11 O1 LHQ sing 188 n n C23 C21 LHQ sing 189 n n C6 C7 LHQ sing 190 n n O1 C10 LHQ sing 191 n n C22 C21 LHQ sing 192 n n C7 C8 LHQ sing 193 n n N3 C15 LHQ sing 194 n n N3 C16 LHQ sing 195 n n C17 C16 LHQ sing 196 n n C17 C18 LHQ sing 197 n n C21 C24 LHQ sing 198 n n C21 C20 LHQ sing 199 n n C16 O3 LHQ doub 200 n n C10 C9 LHQ sing 201 n n C8 C9 LHQ doub 202 n n O4 C19 LHQ doub 203 n n C24 O6 LHQ sing 204 n n C19 N4 LHQ sing 205 n n C19 C20 LHQ sing 206 n n O6 P1 LHQ sing 207 n n N4 C18 LHQ sing 208 n n O7 P1 LHQ doub 209 n n C20 O5 LHQ sing 210 n n P1 O8 LHQ sing 211 n n P1 O9 LHQ sing 212 n n N7 C3 LHQ sing 213 n n O9 P2 LHQ sing 214 n n N6 C5 LHQ doub 215 n y N6 C2 LHQ sing 216 n y C3 C2 LHQ doub 217 n y C3 N1 LHQ sing 218 n y O10 P2 LHQ doub 219 n n C5 N5 LHQ sing 220 n y C2 C1 LHQ sing 221 n y P2 O12 LHQ sing 222 n n P2 O11 LHQ sing 223 n n N1 C4 LHQ doub 224 n y N5 C1 LHQ sing 225 n y N5 C29 LHQ sing 226 n n O12 C25 LHQ sing 227 n n C1 N2 LHQ doub 228 n y C25 C26 LHQ sing 229 n n C4 N2 LHQ sing 230 n y O13 C29 LHQ sing 231 n n O13 C26 LHQ sing 232 n n C29 C28 LHQ sing 233 n n C26 C27 LHQ sing 234 n n C28 C27 LHQ sing 235 n n C28 O18 LHQ sing 236 n n C27 O14 LHQ sing 237 n n O14 P3 LHQ sing 238 n n O17 P3 LHQ doub 239 n n P3 O16 LHQ sing 240 n n P3 O15 LHQ sing 241 n n C4 H1 LHQ sing 242 n n C5 H2 LHQ sing 243 n n C6 H3 LHQ sing 244 n n C7 H4 LHQ sing 245 n n C7 H5 LHQ sing 246 n n C8 H6 LHQ sing 247 n n C9 H7 LHQ sing 248 n n C10 H8 LHQ sing 249 n n C10 H9 LHQ sing 250 n n C12 H10 LHQ sing 251 n n C12 H11 LHQ sing 252 n n C14 H12 LHQ sing 253 n n C14 H13 LHQ sing 254 n n C15 H14 LHQ sing 255 n n C15 H15 LHQ sing 256 n n N3 H16 LHQ sing 257 n n C17 H17 LHQ sing 258 n n C17 H18 LHQ sing 259 n n C18 H19 LHQ sing 260 n n C18 H20 LHQ sing 261 n n N4 H21 LHQ sing 262 n n C20 H22 LHQ sing 263 n n O5 H23 LHQ sing 264 n n C22 H24 LHQ sing 265 n n C22 H25 LHQ sing 266 n n C22 H26 LHQ sing 267 n n C23 H27 LHQ sing 268 n n C23 H28 LHQ sing 269 n n C23 H29 LHQ sing 270 n n C24 H30 LHQ sing 271 n n C24 H31 LHQ sing 272 n n O8 H32 LHQ sing 273 n n O11 H33 LHQ sing 274 n n C25 H34 LHQ sing 275 n n C25 H35 LHQ sing 276 n n C26 H36 LHQ sing 277 n n C27 H37 LHQ sing 278 n n O15 H38 LHQ sing 279 n n O16 H39 LHQ sing 280 n n C28 H40 LHQ sing 281 n n O18 H41 LHQ sing 282 n n C29 H42 LHQ sing 283 n n N7 H43 LHQ sing 284 n n N7 H44 LHQ sing 285 n n # _atom_sites.entry_id 6SLA _atom_sites.fract_transf_matrix[1][1] 0.013131 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000569 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007682 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 LHQ AAA 1 301 301 LHQ OEA . H 2 LHQ BBB 1 301 301 LHQ OEA . I 2 LHQ CCC 1 301 301 LHQ OEA . J 2 LHQ DDD 1 301 301 LHQ OEA . K 2 LHQ EEE 1 301 301 LHQ OEA . L 2 LHQ FFF 1 301 301 LHQ OEA . M 3 HOH AAA 1 401 43 HOH HOH . M 3 HOH AAA 2 402 11 HOH HOH . M 3 HOH AAA 3 403 56 HOH HOH . M 3 HOH AAA 4 404 20 HOH HOH . M 3 HOH AAA 5 405 38 HOH HOH . M 3 HOH AAA 6 406 53 HOH HOH . M 3 HOH AAA 7 407 27 HOH HOH . M 3 HOH AAA 8 408 22 HOH HOH . M 3 HOH AAA 9 409 54 HOH HOH . M 3 HOH AAA 10 410 58 HOH HOH . M 3 HOH AAA 11 411 34 HOH HOH . M 3 HOH AAA 12 412 12 HOH HOH . M 3 HOH AAA 13 413 40 HOH HOH . M 3 HOH AAA 14 414 51 HOH HOH . M 3 HOH AAA 15 415 8 HOH HOH . M 3 HOH AAA 16 416 45 HOH HOH . M 3 HOH AAA 17 417 14 HOH HOH . M 3 HOH AAA 18 418 52 HOH HOH . N 3 HOH BBB 1 401 25 HOH HOH . N 3 HOH BBB 2 402 30 HOH HOH . N 3 HOH BBB 3 403 46 HOH HOH . N 3 HOH BBB 4 404 1 HOH HOH . N 3 HOH BBB 5 405 48 HOH HOH . N 3 HOH BBB 6 406 47 HOH HOH . N 3 HOH BBB 7 407 16 HOH HOH . N 3 HOH BBB 8 408 13 HOH HOH . N 3 HOH BBB 9 409 15 HOH HOH . N 3 HOH BBB 10 410 50 HOH HOH . N 3 HOH BBB 11 411 64 HOH HOH . N 3 HOH BBB 12 412 60 HOH HOH . O 3 HOH CCC 1 401 21 HOH HOH . O 3 HOH CCC 2 402 17 HOH HOH . O 3 HOH CCC 3 403 42 HOH HOH . O 3 HOH CCC 4 404 63 HOH HOH . O 3 HOH CCC 5 405 35 HOH HOH . O 3 HOH CCC 6 406 62 HOH HOH . O 3 HOH CCC 7 407 55 HOH HOH . O 3 HOH CCC 8 408 29 HOH HOH . P 3 HOH DDD 1 401 36 HOH HOH . P 3 HOH DDD 2 402 28 HOH HOH . P 3 HOH DDD 3 403 26 HOH HOH . P 3 HOH DDD 4 404 10 HOH HOH . P 3 HOH DDD 5 405 33 HOH HOH . P 3 HOH DDD 6 406 24 HOH HOH . P 3 HOH DDD 7 407 19 HOH HOH . P 3 HOH DDD 8 408 2 HOH HOH . P 3 HOH DDD 9 409 9 HOH HOH . P 3 HOH DDD 10 410 39 HOH HOH . Q 3 HOH EEE 1 401 31 HOH HOH . Q 3 HOH EEE 2 402 7 HOH HOH . Q 3 HOH EEE 3 403 23 HOH HOH . Q 3 HOH EEE 4 404 59 HOH HOH . Q 3 HOH EEE 5 405 49 HOH HOH . Q 3 HOH EEE 6 406 44 HOH HOH . Q 3 HOH EEE 7 407 3 HOH HOH . R 3 HOH FFF 1 401 57 HOH HOH . R 3 HOH FFF 2 402 32 HOH HOH . R 3 HOH FFF 3 403 4 HOH HOH . R 3 HOH FFF 4 404 6 HOH HOH . R 3 HOH FFF 5 405 18 HOH HOH . R 3 HOH FFF 6 406 37 HOH HOH . R 3 HOH FFF 7 407 5 HOH HOH . R 3 HOH FFF 8 408 61 HOH HOH . R 3 HOH FFF 9 409 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LHQ . . . K 2 21.923 -16.289 -26.803 1 82.34 ? C1 LHQ 301 EEE 1 HETATM 2 C C2 LHQ . . . K 2 22.372 -16.021 -25.554 1 79.91 ? C2 LHQ 301 EEE 1 HETATM 3 C C3 LHQ . . . K 2 22.427 -14.757 -25.114 1 72.84 ? C3 LHQ 301 EEE 1 HETATM 4 C C4 LHQ . . . K 2 21.581 -13.984 -27.202 1 73.18 ? C4 LHQ 301 EEE 1 HETATM 5 C C5 LHQ . . . K 2 22.461 -18.144 -25.838 1 84.78 ? C5 LHQ 301 EEE 1 HETATM 6 N N1 LHQ . . . K 2 22.054 -13.734 -25.897 1 70.35 ? N1 LHQ 301 EEE 1 HETATM 7 N N2 LHQ . . . K 2 21.52 -15.304 -27.638 1 79 ? N2 LHQ 301 EEE 1 HETATM 8 C C6 LHQ . . . K 2 23.48 -6.986 -17.943 1 47.78 ? C6 LHQ 301 EEE 1 HETATM 9 C C7 LHQ . . . K 2 23.716 -5.688 -18.333 1 62.4 ? C7 LHQ 301 EEE 1 HETATM 10 C C8 LHQ . . . K 2 24.548 -5.139 -19.296 1 70.82 ? C8 LHQ 301 EEE 1 HETATM 11 C C9 LHQ . . . K 2 25.395 -5.779 -20.187 1 78.02 ? C9 LHQ 301 EEE 1 HETATM 12 C C10 LHQ . . . K 2 25.614 -7.154 -20.295 1 78.63 ? C10 LHQ 301 EEE 1 HETATM 13 O O1 LHQ . . . K 2 24.981 -8.26 -19.459 1 62.95 ? O1 LHQ 301 EEE 1 HETATM 14 C C11 LHQ . . . K 2 24.03 -8.153 -18.416 1 52.59 ? C11 LHQ 301 EEE 1 HETATM 15 C C12 LHQ . . . K 2 23.552 -9.29 -17.785 1 51.49 ? C12 LHQ 301 EEE 1 HETATM 16 C C13 LHQ . . . K 2 24.018 -10.695 -18.213 1 52.17 ? C13 LHQ 301 EEE 1 HETATM 17 O O2 LHQ . . . K 2 23.51 -11.67 -17.659 1 64.11 ? O2 LHQ 301 EEE 1 HETATM 18 S S1 LHQ . . . K 2 25.323 -10.839 -19.351 1 57.42 ? S1 LHQ 301 EEE 1 HETATM 19 C C14 LHQ . . . K 2 25.427 -12.625 -19.583 1 55.41 ? C14 LHQ 301 EEE 1 HETATM 20 C C15 LHQ . . . K 2 24.822 -12.926 -20.929 1 59.64 ? C15 LHQ 301 EEE 1 HETATM 21 N N3 LHQ . . . K 2 24.603 -14.342 -20.964 1 55.54 ? N3 LHQ 301 EEE 1 HETATM 22 C C16 LHQ . . . K 2 25.608 -15.161 -21.198 1 60.35 ? C16 LHQ 301 EEE 1 HETATM 23 O O3 LHQ . . . K 2 26.761 -14.771 -21.405 1 55.8 ? O3 LHQ 301 EEE 1 HETATM 24 C C17 LHQ . . . K 2 25.177 -16.652 -21.198 1 63.34 ? C17 LHQ 301 EEE 1 HETATM 25 C C18 LHQ . . . K 2 25.099 -17.225 -22.631 1 63.95 ? C18 LHQ 301 EEE 1 HETATM 26 N N4 LHQ . . . K 2 26.237 -18.117 -22.635 1 68.03 ? N4 LHQ 301 EEE 1 HETATM 27 C C19 LHQ . . . K 2 26.344 -19.455 -22.709 1 67.31 ? C19 LHQ 301 EEE 1 HETATM 28 O O4 LHQ . . . K 2 27.456 -19.918 -22.552 1 75.43 ? O4 LHQ 301 EEE 1 HETATM 29 C C20 LHQ . . . K 2 25.228 -20.448 -23.235 1 67.64 ? C20 LHQ 301 EEE 1 HETATM 30 O O5 LHQ . . . K 2 24.54 -19.998 -24.436 1 63.85 ? O5 LHQ 301 EEE 1 HETATM 31 C C21 LHQ . . . K 2 24.266 -21.038 -22.164 1 64.89 ? C21 LHQ 301 EEE 1 HETATM 32 C C22 LHQ . . . K 2 23.433 -19.938 -21.519 1 69.14 ? C22 LHQ 301 EEE 1 HETATM 33 C C23 LHQ . . . K 2 25.06 -21.773 -21.063 1 62.38 ? C23 LHQ 301 EEE 1 HETATM 34 C C24 LHQ . . . K 2 23.307 -22.046 -22.865 1 74.17 ? C24 LHQ 301 EEE 1 HETATM 35 O O6 LHQ . . . K 2 24.044 -23.197 -23.401 1 80.21 ? O6 LHQ 301 EEE 1 HETATM 36 P P1 LHQ . . . K 2 23.544 -24.159 -24.639 1 65.17 ? P1 LHQ 301 EEE 1 HETATM 37 O O7 LHQ . . . K 2 22.337 -24.89 -24.187 1 63.56 ? O7 LHQ 301 EEE 1 HETATM 38 O O8 LHQ . . . K 2 24.692 -24.905 -25.195 1 67.29 ? O8 LHQ 301 EEE 1 HETATM 39 O O9 LHQ . . . K 2 23.001 -23.179 -25.828 1 67.75 ? O9 LHQ 301 EEE 1 HETATM 40 P P2 LHQ . . . K 2 23.899 -22.554 -27.007 1 68.92 ? P2 LHQ 301 EEE 1 HETATM 41 O O10 LHQ . . . K 2 24.703 -21.407 -26.475 1 68.8 ? O10 LHQ 301 EEE 1 HETATM 42 O O11 LHQ . . . K 2 24.595 -23.663 -27.718 1 70.98 ? O11 LHQ 301 EEE 1 HETATM 43 O O12 LHQ . . . K 2 22.829 -21.905 -28.058 1 68.73 ? O12 LHQ 301 EEE 1 HETATM 44 C C25 LHQ . . . K 2 21.402 -21.805 -27.925 1 67.91 ? C25 LHQ 301 EEE 1 HETATM 45 C C26 LHQ . . . K 2 20.916 -20.59 -28.74 1 73.75 ? C26 LHQ 301 EEE 1 HETATM 46 O O13 LHQ . . . K 2 20.603 -19.412 -27.883 1 74.85 ? O13 LHQ 301 EEE 1 HETATM 47 C C27 LHQ . . . K 2 21.955 -20.063 -29.731 1 72.29 ? C27 LHQ 301 EEE 1 HETATM 48 O O14 LHQ . . . K 2 21.233 -19.269 -30.708 1 97.25 ? O14 LHQ 301 EEE 1 HETATM 49 P P3 LHQ . . . K 2 21.163 -19.476 -32.322 1 101.3 ? P3 LHQ 301 EEE 1 HETATM 50 O O15 LHQ . . . K 2 20.316 -18.336 -32.773 1 75.79 ? O15 LHQ 301 EEE 1 HETATM 51 O O16 LHQ . . . K 2 20.597 -20.862 -32.456 1 90.71 ? O16 LHQ 301 EEE 1 HETATM 52 O O17 LHQ . . . K 2 22.618 -19.37 -32.68 1 79.32 ? O17 LHQ 301 EEE 1 HETATM 53 C C28 LHQ . . . K 2 22.693 -19.116 -28.836 1 67.9 ? C28 LHQ 301 EEE 1 HETATM 54 O O18 LHQ . . . K 2 23.442 -18.221 -29.567 1 62.62 ? O18 LHQ 301 EEE 1 HETATM 55 C C29 LHQ . . . K 2 21.553 -18.354 -28.217 1 71.64 ? C29 LHQ 301 EEE 1 HETATM 56 N N5 LHQ . . . K 2 21.979 -17.609 -26.975 1 82.66 ? N5 LHQ 301 EEE 1 HETATM 57 N N6 LHQ . . . K 2 22.706 -17.176 -24.962 1 79.52 ? N6 LHQ 301 EEE 1 HETATM 58 N N7 LHQ . . . K 2 22.891 -14.572 -23.876 1 67.73 ? N7 LHQ 301 EEE 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 379 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 58 #