data_6SLE # _model_server_result.job_id EKnPaIjefFQwdqltjLRlbA _model_server_result.datetime_utc '2025-01-02 17:02:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sle # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 6SLE # _exptl.entry_id 6SLE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 105.56 _cell.angle_beta 90 _cell.angle_gamma 93.99 _cell.entry_id 6SLE _cell.length_a 66.387 _cell.length_b 89.312 _cell.length_c 97.932 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SLE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,Q,R 1 1 C,H,K,P,S,X 2 1 D,E,L,M,T,U 3 1 F,G,N,O,V,W 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 6SLE _atom_sites.fract_transf_matrix[1][1] 0.015063 _atom_sites.fract_transf_matrix[1][2] 0.001051 _atom_sites.fract_transf_matrix[1][3] 0.000294 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011224 _atom_sites.fract_transf_matrix[2][3] 0.003134 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010602 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NAP A 1 1000 1000 NAP NAP . J 2 NAP B 1 301 1006 NAP NAP . K 2 NAP C 1 301 1005 NAP NAP . L 2 NAP D 1 301 1003 NAP NAP . M 2 NAP E 1 301 301 NAP NAP . N 2 NAP F 1 301 1002 NAP NAP . O 2 NAP G 1 301 1004 NAP NAP . P 2 NAP H 1 1001 1001 NAP NAP . Q 3 HOH A 1 1101 7 HOH HOH . Q 3 HOH A 2 1102 11 HOH HOH . Q 3 HOH A 3 1103 12 HOH HOH . Q 3 HOH A 4 1104 58 HOH HOH . Q 3 HOH A 5 1105 77 HOH HOH . Q 3 HOH A 6 1106 18 HOH HOH . Q 3 HOH A 7 1107 4 HOH HOH . Q 3 HOH A 8 1108 102 HOH HOH . Q 3 HOH A 9 1109 103 HOH HOH . Q 3 HOH A 10 1110 34 HOH HOH . Q 3 HOH A 11 1111 51 HOH HOH . Q 3 HOH A 12 1112 92 HOH HOH . Q 3 HOH A 13 1113 25 HOH HOH . Q 3 HOH A 14 1114 19 HOH HOH . Q 3 HOH A 15 1115 66 HOH HOH . R 3 HOH B 1 401 47 HOH HOH . R 3 HOH B 2 402 56 HOH HOH . R 3 HOH B 3 403 44 HOH HOH . R 3 HOH B 4 404 75 HOH HOH . R 3 HOH B 5 405 73 HOH HOH . R 3 HOH B 6 406 59 HOH HOH . R 3 HOH B 7 407 55 HOH HOH . R 3 HOH B 8 408 104 HOH HOH . R 3 HOH B 9 409 41 HOH HOH . R 3 HOH B 10 410 93 HOH HOH . R 3 HOH B 11 411 42 HOH HOH . R 3 HOH B 12 412 67 HOH HOH . R 3 HOH B 13 413 57 HOH HOH . R 3 HOH B 14 414 91 HOH HOH . R 3 HOH B 15 415 90 HOH HOH . S 3 HOH C 1 401 40 HOH HOH . S 3 HOH C 2 402 80 HOH HOH . S 3 HOH C 3 403 78 HOH HOH . S 3 HOH C 4 404 15 HOH HOH . S 3 HOH C 5 405 63 HOH HOH . S 3 HOH C 6 406 28 HOH HOH . S 3 HOH C 7 407 29 HOH HOH . S 3 HOH C 8 408 27 HOH HOH . T 3 HOH D 1 401 54 HOH HOH . T 3 HOH D 2 402 71 HOH HOH . T 3 HOH D 3 403 70 HOH HOH . T 3 HOH D 4 404 5 HOH HOH . T 3 HOH D 5 405 8 HOH HOH . T 3 HOH D 6 406 76 HOH HOH . T 3 HOH D 7 407 45 HOH HOH . T 3 HOH D 8 408 10 HOH HOH . T 3 HOH D 9 409 22 HOH HOH . T 3 HOH D 10 410 105 HOH HOH . T 3 HOH D 11 411 53 HOH HOH . U 3 HOH E 1 401 50 HOH HOH . U 3 HOH E 2 402 81 HOH HOH . U 3 HOH E 3 403 24 HOH HOH . U 3 HOH E 4 404 20 HOH HOH . U 3 HOH E 5 405 86 HOH HOH . U 3 HOH E 6 406 106 HOH HOH . U 3 HOH E 7 407 46 HOH HOH . U 3 HOH E 8 408 2 HOH HOH . U 3 HOH E 9 409 48 HOH HOH . U 3 HOH E 10 410 9 HOH HOH . U 3 HOH E 11 411 3 HOH HOH . U 3 HOH E 12 412 23 HOH HOH . U 3 HOH E 13 413 107 HOH HOH . U 3 HOH E 14 414 1 HOH HOH . U 3 HOH E 15 415 21 HOH HOH . V 3 HOH F 1 401 33 HOH HOH . V 3 HOH F 2 402 32 HOH HOH . V 3 HOH F 3 403 35 HOH HOH . V 3 HOH F 4 404 79 HOH HOH . V 3 HOH F 5 405 65 HOH HOH . V 3 HOH F 6 406 97 HOH HOH . V 3 HOH F 7 407 96 HOH HOH . V 3 HOH F 8 408 98 HOH HOH . V 3 HOH F 9 409 6 HOH HOH . V 3 HOH F 10 410 36 HOH HOH . V 3 HOH F 11 411 108 HOH HOH . V 3 HOH F 12 412 30 HOH HOH . V 3 HOH F 13 413 100 HOH HOH . V 3 HOH F 14 414 64 HOH HOH . W 3 HOH G 1 401 16 HOH HOH . W 3 HOH G 2 402 68 HOH HOH . W 3 HOH G 3 403 31 HOH HOH . W 3 HOH G 4 404 43 HOH HOH . W 3 HOH G 5 405 87 HOH HOH . W 3 HOH G 6 406 89 HOH HOH . W 3 HOH G 7 407 95 HOH HOH . W 3 HOH G 8 408 74 HOH HOH . W 3 HOH G 9 409 62 HOH HOH . W 3 HOH G 10 410 17 HOH HOH . W 3 HOH G 11 411 99 HOH HOH . W 3 HOH G 12 412 39 HOH HOH . W 3 HOH G 13 413 101 HOH HOH . X 3 HOH H 1 1101 72 HOH HOH . X 3 HOH H 2 1102 82 HOH HOH . X 3 HOH H 3 1103 84 HOH HOH . X 3 HOH H 4 1104 85 HOH HOH . X 3 HOH H 5 1105 69 HOH HOH . X 3 HOH H 6 1106 37 HOH HOH . X 3 HOH H 7 1107 49 HOH HOH . X 3 HOH H 8 1108 38 HOH HOH . X 3 HOH H 9 1109 94 HOH HOH . X 3 HOH H 10 1110 109 HOH HOH . X 3 HOH H 11 1111 26 HOH HOH . X 3 HOH H 12 1112 14 HOH HOH . X 3 HOH H 13 1113 13 HOH HOH . X 3 HOH H 14 1114 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . K 2 34.989 16.247 24.549 1 65.15 ? PA NAP 301 C 1 HETATM 2 O O1A NAP . . . K 2 33.714 16.083 23.748 1 64.62 ? O1A NAP 301 C 1 HETATM 3 O O2A NAP . . . K 2 36.269 15.656 23.971 1 59.01 ? O2A NAP 301 C 1 HETATM 4 O O5B NAP . . . K 2 35.154 17.814 24.99 1 65.38 ? O5B NAP 301 C 1 HETATM 5 C C5B NAP . . . K 2 35.814 18.822 24.196 1 63.15 ? C5B NAP 301 C 1 HETATM 6 C C4B NAP . . . K 2 35.135 20.204 24.338 1 65.87 ? C4B NAP 301 C 1 HETATM 7 O O4B NAP . . . K 2 36.026 21.19 24.9 1 68.27 ? O4B NAP 301 C 1 HETATM 8 C C3B NAP . . . K 2 34.752 20.818 23.002 1 65.03 ? C3B NAP 301 C 1 HETATM 9 O O3B NAP . . . K 2 33.697 21.786 23.158 1 55.26 ? O3B NAP 301 C 1 HETATM 10 C C2B NAP . . . K 2 36.087 21.421 22.609 1 66.97 ? C2B NAP 301 C 1 HETATM 11 O O2B NAP . . . K 2 36.033 22.26 21.452 1 88.45 ? O2B NAP 301 C 1 HETATM 12 C C1B NAP . . . K 2 36.528 22.093 23.897 1 60.61 ? C1B NAP 301 C 1 HETATM 13 N N9A NAP . . . K 2 38.014 22.285 24.036 1 55.02 ? N9A NAP 301 C 1 HETATM 14 C C8A NAP . . . K 2 38.949 21.311 24.166 1 48.63 ? C8A NAP 301 C 1 HETATM 15 N N7A NAP . . . K 2 40.197 21.844 24.258 1 47.17 ? N7A NAP 301 C 1 HETATM 16 C C5A NAP . . . K 2 40.083 23.19 24.204 1 49.1 ? C5A NAP 301 C 1 HETATM 17 C C6A NAP . . . K 2 40.992 24.363 24.262 1 46.96 ? C6A NAP 301 C 1 HETATM 18 N N6A NAP . . . K 2 42.327 24.22 24.401 1 48.3 ? N6A NAP 301 C 1 HETATM 19 N N1A NAP . . . K 2 40.454 25.599 24.172 1 45.83 ? N1A NAP 301 C 1 HETATM 20 C C2A NAP . . . K 2 39.12 25.796 24.031 1 44.43 ? C2A NAP 301 C 1 HETATM 21 N N3A NAP . . . K 2 38.246 24.789 23.964 1 45.6 ? N3A NAP 301 C 1 HETATM 22 C C4A NAP . . . K 2 38.644 23.483 24.06 1 51.8 ? C4A NAP 301 C 1 HETATM 23 O O3 NAP . . . K 2 34.699 15.571 25.972 1 59.36 ? O3 NAP 301 C 1 HETATM 24 P PN NAP . . . K 2 33.414 16.064 26.792 1 73.58 ? PN NAP 301 C 1 HETATM 25 O O1N NAP . . . K 2 32.518 14.902 27.173 1 73.38 ? O1N NAP 301 C 1 HETATM 26 O O2N NAP . . . K 2 32.778 17.242 26.064 1 81.92 ? O2N NAP 301 C 1 HETATM 27 O O5D NAP . . . K 2 34.061 16.581 28.174 1 67.66 ? O5D NAP 301 C 1 HETATM 28 C C5D NAP . . . K 2 33.684 17.826 28.768 1 58.66 ? C5D NAP 301 C 1 HETATM 29 C C4D NAP . . . K 2 33.798 17.808 30.279 1 51.13 ? C4D NAP 301 C 1 HETATM 30 O O4D NAP . . . K 2 32.727 17.019 30.868 1 45.52 ? O4D NAP 301 C 1 HETATM 31 C C3D NAP . . . K 2 35.155 17.251 30.69 1 46.95 ? C3D NAP 301 C 1 HETATM 32 O O3D NAP . . . K 2 35.703 18.132 31.699 1 46.27 ? O3D NAP 301 C 1 HETATM 33 C C2D NAP . . . K 2 34.73 15.816 31.069 1 42.98 ? C2D NAP 301 C 1 HETATM 34 O O2D NAP . . . K 2 35.658 15.067 31.858 1 35.35 ? O2D NAP 301 C 1 HETATM 35 C C1D NAP . . . K 2 33.322 16.02 31.686 1 40.44 ? C1D NAP 301 C 1 HETATM 36 N N1N NAP . . . K 2 32.479 14.815 31.713 1 35.9 ? N1N NAP 301 C 1 HETATM 37 C C2N NAP . . . K 2 32.308 14.104 30.6 1 31.02 ? C2N NAP 301 C 1 HETATM 38 C C3N NAP . . . K 2 31.539 12.957 30.584 1 28.92 ? C3N NAP 301 C 1 HETATM 39 C C7N NAP . . . K 2 31.346 12.198 29.324 1 28.9 ? C7N NAP 301 C 1 HETATM 40 O O7N NAP . . . K 2 30.686 11.172 29.297 1 26.03 ? O7N NAP 301 C 1 HETATM 41 N N7N NAP . . . K 2 31.886 12.65 28.194 1 31.51 ? N7N NAP 301 C 1 HETATM 42 C C4N NAP . . . K 2 30.936 12.528 31.745 1 33.07 ? C4N NAP 301 C 1 HETATM 43 C C5N NAP . . . K 2 31.132 13.27 32.91 1 35.17 ? C5N NAP 301 C 1 HETATM 44 C C6N NAP . . . K 2 31.9 14.428 32.862 1 36.19 ? C6N NAP 301 C 1 HETATM 45 P P2B NAP . . . K 2 37.261 22.248 20.38 1 93.77 ? P2B NAP 301 C 1 HETATM 46 O O1X NAP . . . K 2 37.671 20.79 20.195 1 72.54 ? O1X NAP 301 C 1 HETATM 47 O O2X NAP . . . K 2 36.601 22.901 19.177 1 91.4 ? O2X NAP 301 C 1 HETATM 48 O O3X NAP . . . K 2 38.321 23.098 21.055 1 80.45 ? O3X NAP 301 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 48 #