data_6SLK # _model_server_result.job_id D0k78NIWBzKdxjXliNRSFw _model_server_result.datetime_utc '2024-11-08 18:45:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6slk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":202}' # _entry.id 6SLK # _exptl.entry_id 6SLK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SLK _cell.length_a 176.007 _cell.length_b 176.007 _cell.length_c 61.781 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SLK _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,I 1 1,3 C,F,G,H,K 2 1 B,J 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z+1/4 0 -1 0 1 0 0 0 0 1 88.0035 88.0035 15.44525 3 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PHE 176 A PHE 166 1_555 D NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc2 D NA NA . A NA 201 1_555 I O HOH . A HOH 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc3 F NA NA . C NA 201 1_555 K O HOH . C HOH 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6SLK _atom_sites.fract_transf_matrix[1][1] 0.005682 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NA A 1 201 2 NA NA . E 3 SO4 A 1 202 1 SO4 SO4 . F 2 NA C 1 201 4 NA NA . G 2 NA C 1 202 5 NA NA . H 3 SO4 C 1 203 2 SO4 SO4 . I 4 HOH A 1 301 155 HOH HOH . I 4 HOH A 2 302 245 HOH HOH . I 4 HOH A 3 303 48 HOH HOH . I 4 HOH A 4 304 214 HOH HOH . I 4 HOH A 5 305 205 HOH HOH . I 4 HOH A 6 306 119 HOH HOH . I 4 HOH A 7 307 5 HOH HOH . I 4 HOH A 8 308 90 HOH HOH . I 4 HOH A 9 309 55 HOH HOH . I 4 HOH A 10 310 3 HOH HOH . I 4 HOH A 11 311 122 HOH HOH . I 4 HOH A 12 312 227 HOH HOH . I 4 HOH A 13 313 248 HOH HOH . I 4 HOH A 14 314 110 HOH HOH . I 4 HOH A 15 315 129 HOH HOH . I 4 HOH A 16 316 179 HOH HOH . I 4 HOH A 17 317 247 HOH HOH . I 4 HOH A 18 318 15 HOH HOH . I 4 HOH A 19 319 60 HOH HOH . I 4 HOH A 20 320 71 HOH HOH . I 4 HOH A 21 321 282 HOH HOH . I 4 HOH A 22 322 41 HOH HOH . I 4 HOH A 23 323 276 HOH HOH . I 4 HOH A 24 324 98 HOH HOH . I 4 HOH A 25 325 158 HOH HOH . I 4 HOH A 26 326 22 HOH HOH . I 4 HOH A 27 327 51 HOH HOH . I 4 HOH A 28 328 32 HOH HOH . I 4 HOH A 29 329 6 HOH HOH . I 4 HOH A 30 330 153 HOH HOH . I 4 HOH A 31 331 175 HOH HOH . I 4 HOH A 32 332 26 HOH HOH . I 4 HOH A 33 333 201 HOH HOH . I 4 HOH A 34 334 269 HOH HOH . I 4 HOH A 35 335 222 HOH HOH . I 4 HOH A 36 336 93 HOH HOH . I 4 HOH A 37 337 78 HOH HOH . I 4 HOH A 38 338 120 HOH HOH . I 4 HOH A 39 339 36 HOH HOH . I 4 HOH A 40 340 151 HOH HOH . I 4 HOH A 41 341 12 HOH HOH . I 4 HOH A 42 342 189 HOH HOH . I 4 HOH A 43 343 235 HOH HOH . I 4 HOH A 44 344 96 HOH HOH . I 4 HOH A 45 345 143 HOH HOH . I 4 HOH A 46 346 80 HOH HOH . I 4 HOH A 47 347 54 HOH HOH . I 4 HOH A 48 348 209 HOH HOH . I 4 HOH A 49 349 199 HOH HOH . I 4 HOH A 50 350 279 HOH HOH . I 4 HOH A 51 351 135 HOH HOH . I 4 HOH A 52 352 196 HOH HOH . I 4 HOH A 53 353 107 HOH HOH . I 4 HOH A 54 354 277 HOH HOH . I 4 HOH A 55 355 126 HOH HOH . I 4 HOH A 56 356 193 HOH HOH . I 4 HOH A 57 357 249 HOH HOH . I 4 HOH A 58 358 184 HOH HOH . I 4 HOH A 59 359 187 HOH HOH . I 4 HOH A 60 360 206 HOH HOH . I 4 HOH A 61 361 112 HOH HOH . I 4 HOH A 62 362 244 HOH HOH . I 4 HOH A 63 363 169 HOH HOH . J 4 HOH B 1 201 216 HOH HOH . J 4 HOH B 2 202 250 HOH HOH . J 4 HOH B 3 203 162 HOH HOH . J 4 HOH B 4 204 204 HOH HOH . J 4 HOH B 5 205 68 HOH HOH . J 4 HOH B 6 206 180 HOH HOH . J 4 HOH B 7 207 144 HOH HOH . J 4 HOH B 8 208 97 HOH HOH . J 4 HOH B 9 209 13 HOH HOH . J 4 HOH B 10 210 258 HOH HOH . J 4 HOH B 11 211 59 HOH HOH . J 4 HOH B 12 212 197 HOH HOH . J 4 HOH B 13 213 171 HOH HOH . J 4 HOH B 14 214 211 HOH HOH . J 4 HOH B 15 215 167 HOH HOH . J 4 HOH B 16 216 82 HOH HOH . J 4 HOH B 17 217 108 HOH HOH . J 4 HOH B 18 218 183 HOH HOH . J 4 HOH B 19 219 57 HOH HOH . J 4 HOH B 20 220 37 HOH HOH . J 4 HOH B 21 221 87 HOH HOH . J 4 HOH B 22 222 229 HOH HOH . J 4 HOH B 23 223 146 HOH HOH . J 4 HOH B 24 224 77 HOH HOH . J 4 HOH B 25 225 23 HOH HOH . J 4 HOH B 26 226 115 HOH HOH . J 4 HOH B 27 227 1 HOH HOH . J 4 HOH B 28 228 27 HOH HOH . J 4 HOH B 29 229 224 HOH HOH . J 4 HOH B 30 230 92 HOH HOH . J 4 HOH B 31 231 105 HOH HOH . J 4 HOH B 32 232 9 HOH HOH . J 4 HOH B 33 233 141 HOH HOH . J 4 HOH B 34 234 251 HOH HOH . J 4 HOH B 35 235 79 HOH HOH . J 4 HOH B 36 236 64 HOH HOH . J 4 HOH B 37 237 50 HOH HOH . J 4 HOH B 38 238 74 HOH HOH . J 4 HOH B 39 239 240 HOH HOH . J 4 HOH B 40 240 160 HOH HOH . J 4 HOH B 41 241 154 HOH HOH . J 4 HOH B 42 242 243 HOH HOH . J 4 HOH B 43 243 194 HOH HOH . J 4 HOH B 44 244 62 HOH HOH . J 4 HOH B 45 245 47 HOH HOH . J 4 HOH B 46 246 237 HOH HOH . J 4 HOH B 47 247 157 HOH HOH . J 4 HOH B 48 248 127 HOH HOH . J 4 HOH B 49 249 161 HOH HOH . J 4 HOH B 50 250 106 HOH HOH . J 4 HOH B 51 251 30 HOH HOH . J 4 HOH B 52 252 39 HOH HOH . J 4 HOH B 53 253 21 HOH HOH . J 4 HOH B 54 254 264 HOH HOH . J 4 HOH B 55 255 149 HOH HOH . J 4 HOH B 56 256 43 HOH HOH . J 4 HOH B 57 257 132 HOH HOH . J 4 HOH B 58 258 76 HOH HOH . J 4 HOH B 59 259 219 HOH HOH . J 4 HOH B 60 260 38 HOH HOH . J 4 HOH B 61 261 185 HOH HOH . J 4 HOH B 62 262 210 HOH HOH . J 4 HOH B 63 263 202 HOH HOH . J 4 HOH B 64 264 109 HOH HOH . J 4 HOH B 65 265 147 HOH HOH . J 4 HOH B 66 266 18 HOH HOH . J 4 HOH B 67 267 200 HOH HOH . J 4 HOH B 68 268 72 HOH HOH . J 4 HOH B 69 269 7 HOH HOH . J 4 HOH B 70 270 168 HOH HOH . J 4 HOH B 71 271 85 HOH HOH . J 4 HOH B 72 272 225 HOH HOH . J 4 HOH B 73 273 49 HOH HOH . J 4 HOH B 74 274 28 HOH HOH . J 4 HOH B 75 275 11 HOH HOH . J 4 HOH B 76 276 273 HOH HOH . J 4 HOH B 77 277 177 HOH HOH . J 4 HOH B 78 278 67 HOH HOH . J 4 HOH B 79 279 230 HOH HOH . J 4 HOH B 80 280 91 HOH HOH . J 4 HOH B 81 281 123 HOH HOH . J 4 HOH B 82 282 217 HOH HOH . J 4 HOH B 83 283 124 HOH HOH . J 4 HOH B 84 284 181 HOH HOH . J 4 HOH B 85 285 148 HOH HOH . J 4 HOH B 86 286 33 HOH HOH . J 4 HOH B 87 287 265 HOH HOH . J 4 HOH B 88 288 130 HOH HOH . J 4 HOH B 89 289 139 HOH HOH . J 4 HOH B 90 290 221 HOH HOH . J 4 HOH B 91 291 231 HOH HOH . J 4 HOH B 92 292 14 HOH HOH . J 4 HOH B 93 293 88 HOH HOH . J 4 HOH B 94 294 45 HOH HOH . J 4 HOH B 95 295 137 HOH HOH . J 4 HOH B 96 296 163 HOH HOH . J 4 HOH B 97 297 207 HOH HOH . J 4 HOH B 98 298 259 HOH HOH . J 4 HOH B 99 299 270 HOH HOH . J 4 HOH B 100 300 268 HOH HOH . J 4 HOH B 101 301 220 HOH HOH . J 4 HOH B 102 302 261 HOH HOH . J 4 HOH B 103 303 188 HOH HOH . J 4 HOH B 104 304 101 HOH HOH . J 4 HOH B 105 305 257 HOH HOH . J 4 HOH B 106 306 100 HOH HOH . J 4 HOH B 107 307 228 HOH HOH . J 4 HOH B 108 308 260 HOH HOH . J 4 HOH B 109 309 215 HOH HOH . J 4 HOH B 110 310 29 HOH HOH . J 4 HOH B 111 311 208 HOH HOH . J 4 HOH B 112 312 192 HOH HOH . J 4 HOH B 113 313 152 HOH HOH . K 4 HOH C 1 301 218 HOH HOH . K 4 HOH C 2 302 73 HOH HOH . K 4 HOH C 3 303 164 HOH HOH . K 4 HOH C 4 304 195 HOH HOH . K 4 HOH C 5 305 246 HOH HOH . K 4 HOH C 6 306 116 HOH HOH . K 4 HOH C 7 307 275 HOH HOH . K 4 HOH C 8 308 150 HOH HOH . K 4 HOH C 9 309 145 HOH HOH . K 4 HOH C 10 310 266 HOH HOH . K 4 HOH C 11 311 136 HOH HOH . K 4 HOH C 12 312 84 HOH HOH . K 4 HOH C 13 313 117 HOH HOH . K 4 HOH C 14 314 61 HOH HOH . K 4 HOH C 15 315 262 HOH HOH . K 4 HOH C 16 316 191 HOH HOH . K 4 HOH C 17 317 40 HOH HOH . K 4 HOH C 18 318 70 HOH HOH . K 4 HOH C 19 319 165 HOH HOH . K 4 HOH C 20 320 274 HOH HOH . K 4 HOH C 21 321 134 HOH HOH . K 4 HOH C 22 322 17 HOH HOH . K 4 HOH C 23 323 198 HOH HOH . K 4 HOH C 24 324 182 HOH HOH . K 4 HOH C 25 325 186 HOH HOH . K 4 HOH C 26 326 99 HOH HOH . K 4 HOH C 27 327 53 HOH HOH . K 4 HOH C 28 328 46 HOH HOH . K 4 HOH C 29 329 2 HOH HOH . K 4 HOH C 30 330 8 HOH HOH . K 4 HOH C 31 331 94 HOH HOH . K 4 HOH C 32 332 89 HOH HOH . K 4 HOH C 33 333 173 HOH HOH . K 4 HOH C 34 334 104 HOH HOH . K 4 HOH C 35 335 52 HOH HOH . K 4 HOH C 36 336 86 HOH HOH . K 4 HOH C 37 337 42 HOH HOH . K 4 HOH C 38 338 239 HOH HOH . K 4 HOH C 39 339 24 HOH HOH . K 4 HOH C 40 340 212 HOH HOH . K 4 HOH C 41 341 34 HOH HOH . K 4 HOH C 42 342 102 HOH HOH . K 4 HOH C 43 343 121 HOH HOH . K 4 HOH C 44 344 267 HOH HOH . K 4 HOH C 45 345 131 HOH HOH . K 4 HOH C 46 346 238 HOH HOH . K 4 HOH C 47 347 226 HOH HOH . K 4 HOH C 48 348 103 HOH HOH . K 4 HOH C 49 349 133 HOH HOH . K 4 HOH C 50 350 138 HOH HOH . K 4 HOH C 51 351 118 HOH HOH . K 4 HOH C 52 352 35 HOH HOH . K 4 HOH C 53 353 44 HOH HOH . K 4 HOH C 54 354 176 HOH HOH . K 4 HOH C 55 355 16 HOH HOH . K 4 HOH C 56 356 174 HOH HOH . K 4 HOH C 57 357 254 HOH HOH . K 4 HOH C 58 358 69 HOH HOH . K 4 HOH C 59 359 170 HOH HOH . K 4 HOH C 60 360 111 HOH HOH . K 4 HOH C 61 361 19 HOH HOH . K 4 HOH C 62 362 142 HOH HOH . K 4 HOH C 63 363 81 HOH HOH . K 4 HOH C 64 364 20 HOH HOH . K 4 HOH C 65 365 128 HOH HOH . K 4 HOH C 66 366 31 HOH HOH . K 4 HOH C 67 367 156 HOH HOH . K 4 HOH C 68 368 203 HOH HOH . K 4 HOH C 69 369 58 HOH HOH . K 4 HOH C 70 370 159 HOH HOH . K 4 HOH C 71 371 125 HOH HOH . K 4 HOH C 72 372 65 HOH HOH . K 4 HOH C 73 373 140 HOH HOH . K 4 HOH C 74 374 114 HOH HOH . K 4 HOH C 75 375 113 HOH HOH . K 4 HOH C 76 376 25 HOH HOH . K 4 HOH C 77 377 166 HOH HOH . K 4 HOH C 78 378 66 HOH HOH . K 4 HOH C 79 379 75 HOH HOH . K 4 HOH C 80 380 232 HOH HOH . K 4 HOH C 81 381 83 HOH HOH . K 4 HOH C 82 382 63 HOH HOH . K 4 HOH C 83 383 10 HOH HOH . K 4 HOH C 84 384 252 HOH HOH . K 4 HOH C 85 385 281 HOH HOH . K 4 HOH C 86 386 4 HOH HOH . K 4 HOH C 87 387 271 HOH HOH . K 4 HOH C 88 388 95 HOH HOH . K 4 HOH C 89 389 272 HOH HOH . K 4 HOH C 90 390 241 HOH HOH . K 4 HOH C 91 391 253 HOH HOH . K 4 HOH C 92 392 172 HOH HOH . K 4 HOH C 93 393 233 HOH HOH . K 4 HOH C 94 394 56 HOH HOH . K 4 HOH C 95 395 236 HOH HOH . K 4 HOH C 96 396 178 HOH HOH . K 4 HOH C 97 397 263 HOH HOH . K 4 HOH C 98 398 234 HOH HOH . K 4 HOH C 99 399 256 HOH HOH . K 4 HOH C 100 400 190 HOH HOH . K 4 HOH C 101 401 223 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 35.915 _atom_site.Cartn_y 76.064 _atom_site.Cartn_z 9.496 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #