data_6SM3 # _model_server_result.job_id xCfKkbqPGfhbsbZ7ICT32w _model_server_result.datetime_utc '2024-10-20 19:14:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sm3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 6SM3 # _exptl.entry_id 6SM3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1233.719 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,4S,6R)-6-({[2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-GLUCOPYRANOSYL]OXY}METHYL)-4-HYDROXY-1-{[(15-METHYLHEXADECANOYL)OXY]METHYL}-4-OXIDO-7-OXO-3,5-DIOXA-8-AZA-4-PHOSPHAHEPTACOS-1-YL 15-METHYLHEXADECANOATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SM3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SM3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' ? ? 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 231.3556 231.009 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 1 A CYS 20 1_555 D CAW 5PL . A 5PL 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 A N CYS 1 A CYS 20 1_555 E C1 PLM . A PLM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale3 A N CYS 1 A CYS 20 1_555 E O2 PLM . A PLM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.224 ? # _chem_comp.formula 'C67 H129 N2 O15 P' _chem_comp.formula_weight 1233.719 _chem_comp.id 5PL _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,4S,6R)-6-({[2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-GLUCOPYRANOSYL]OXY}METHYL)-4-HYDROXY-1-{[(15-METHYLHEXADECANOYL)OXY]METHYL}-4-OXIDO-7-OXO-3,5-DIOXA-8-AZA-4-PHOSPHAHEPTACOS-1-YL 15-METHYLHEXADECANOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6SM3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 5PL A 1 601 2 5PL 5PL . E 5 PLM A 1 602 2 PLM PLM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OCO 5PL . . . D 4 123.57 89.158 125.097 1 18.02 ? OCO 5PL 601 A 1 HETATM 2 C CBL 5PL . . . D 4 122.547 89.699 124.823 1 18.02 ? CBL 5PL 601 A 1 HETATM 3 C CBM 5PL . . . D 4 121.494 89.969 125.917 1 18.02 ? CBM 5PL 601 A 1 HETATM 4 O OCL 5PL . . . D 4 122.304 90.078 123.49 1 18.02 ? OCL 5PL 601 A 1 HETATM 5 C CBN 5PL . . . D 4 122.153 90.148 127.31 1 18.02 ? CBN 5PL 601 A 1 HETATM 6 C CBO 5PL . . . D 4 121.192 90.95 128.232 1 18.02 ? CBO 5PL 601 A 1 HETATM 7 C CBP 5PL . . . D 4 121.715 90.95 129.69 1 18.02 ? CBP 5PL 601 A 1 HETATM 8 C CAA 5PL . . . D 4 120.589 91.416 130.65 1 18.02 ? CAA 5PL 601 A 1 HETATM 9 C CBR 5PL . . . D 4 121.21 92.02 131.944 1 18.02 ? CBR 5PL 601 A 1 HETATM 10 C CBS 5PL . . . D 4 120.093 92.591 132.868 1 18.02 ? CBS 5PL 601 A 1 HETATM 11 C CBT 5PL . . . D 4 120.68 92.921 134.267 1 18.02 ? CBT 5PL 601 A 1 HETATM 12 C CBI 5PL . . . D 4 122.745 91.387 123.167 1 18.02 ? CBI 5PL 601 A 1 HETATM 13 C CBH 5PL . . . D 4 121.742 92.025 122.196 1 18.02 ? CBH 5PL 601 A 1 HETATM 14 C CAW 5PL . . . D 4 122.193 91.791 120.751 1 18.02 ? CAW 5PL 601 A 1 HETATM 15 C CBV 5PL . . . D 4 120.903 94.188 124.752 1 18.02 ? CBV 5PL 601 A 1 HETATM 16 C CBW 5PL . . . D 4 119.582 94.173 125.536 1 18.02 ? CBW 5PL 601 A 1 HETATM 17 C CBX 5PL . . . D 4 119.838 94.648 126.984 1 18.02 ? CBX 5PL 601 A 1 HETATM 18 C CBY 5PL . . . D 4 118.508 95.06 127.632 1 18.02 ? CBY 5PL 601 A 1 HETATM 19 C CAE 5PL . . . D 4 117.7 95.331 130 1 18.02 ? CAE 5PL 601 A 1 HETATM 20 C CAF 5PL . . . D 4 117.726 96.232 131.253 1 18.02 ? CAF 5PL 601 A 1 HETATM 21 C CAG 5PL . . . D 4 117.002 95.485 132.411 1 18.02 ? CAG 5PL 601 A 1 HETATM 22 C CAK 5PL . . . D 4 117.03 96.33 133.703 1 18.02 ? CAK 5PL 601 A 1 HETATM 23 C CBZ 5PL . . . D 4 118.77 95.778 128.983 1 18.02 ? CBZ 5PL 601 A 1 HETATM 24 C CBU 5PL . . . D 4 120.631 93.81 123.288 1 18.02 ? CBU 5PL 601 A 1 HETATM 25 O OCK 5PL . . . D 4 121.681 93.392 122.441 1 18.02 ? OCK 5PL 601 A 1 HETATM 26 O OCN 5PL . . . D 4 119.542 93.89 122.87 1 18.02 ? OCN 5PL 601 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #