data_6SM8 # _model_server_result.job_id weuJGdisbPLlzQixeO5ubQ _model_server_result.datetime_utc '2024-11-23 00:29:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sm8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1203}' # _entry.id 6SM8 # _exptl.entry_id 6SM8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.16 _cell.angle_gamma 90 _cell.entry_id 6SM8 _cell.length_a 43.194 _cell.length_b 174.065 _cell.length_c 44.956 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SM8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G 1 1 B,D,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 181 A GLU 1033 1_555 A N PTR 182 A PTR 1034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale2 A C PTR 182 A PTR 1034 1_555 A N PTR 183 A PTR 1035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale3 A C PTR 183 A PTR 1035 1_555 A N THR 184 A THR 1036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale4 B C GLU 180 B GLU 1033 1_555 B N PTR 181 B PTR 1034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale5 B C PTR 181 B PTR 1034 1_555 B N PTR 182 B PTR 1035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale6 B C PTR 182 B PTR 1035 1_555 B N THR 183 B THR 1036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6SM8 _atom_sites.fract_transf_matrix[1][1] 0.023151 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001684 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022303 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 LKT A 1 1201 1 LKT INH . D 3 LKT B 1 1201 2 LKT INH . E 4 EDO B 1 1202 1 EDO EDO . F 4 EDO B 1 1203 2 EDO EDO . G 5 HOH A 1 1301 129 HOH HOH . G 5 HOH A 2 1302 177 HOH HOH . G 5 HOH A 3 1303 7 HOH HOH . G 5 HOH A 4 1304 155 HOH HOH . G 5 HOH A 5 1305 181 HOH HOH . G 5 HOH A 6 1306 138 HOH HOH . G 5 HOH A 7 1307 171 HOH HOH . G 5 HOH A 8 1308 160 HOH HOH . G 5 HOH A 9 1309 176 HOH HOH . G 5 HOH A 10 1310 46 HOH HOH . G 5 HOH A 11 1311 99 HOH HOH . G 5 HOH A 12 1312 248 HOH HOH . G 5 HOH A 13 1313 194 HOH HOH . G 5 HOH A 14 1314 145 HOH HOH . G 5 HOH A 15 1315 35 HOH HOH . G 5 HOH A 16 1316 55 HOH HOH . G 5 HOH A 17 1317 44 HOH HOH . G 5 HOH A 18 1318 156 HOH HOH . G 5 HOH A 19 1319 165 HOH HOH . G 5 HOH A 20 1320 60 HOH HOH . G 5 HOH A 21 1321 164 HOH HOH . G 5 HOH A 22 1322 231 HOH HOH . G 5 HOH A 23 1323 73 HOH HOH . G 5 HOH A 24 1324 37 HOH HOH . G 5 HOH A 25 1325 112 HOH HOH . G 5 HOH A 26 1326 32 HOH HOH . G 5 HOH A 27 1327 130 HOH HOH . G 5 HOH A 28 1328 65 HOH HOH . G 5 HOH A 29 1329 162 HOH HOH . G 5 HOH A 30 1330 170 HOH HOH . G 5 HOH A 31 1331 72 HOH HOH . G 5 HOH A 32 1332 242 HOH HOH . G 5 HOH A 33 1333 174 HOH HOH . G 5 HOH A 34 1334 180 HOH HOH . G 5 HOH A 35 1335 202 HOH HOH . G 5 HOH A 36 1336 137 HOH HOH . G 5 HOH A 37 1337 66 HOH HOH . G 5 HOH A 38 1338 78 HOH HOH . G 5 HOH A 39 1339 98 HOH HOH . G 5 HOH A 40 1340 161 HOH HOH . G 5 HOH A 41 1341 101 HOH HOH . G 5 HOH A 42 1342 125 HOH HOH . G 5 HOH A 43 1343 52 HOH HOH . G 5 HOH A 44 1344 207 HOH HOH . G 5 HOH A 45 1345 151 HOH HOH . G 5 HOH A 46 1346 208 HOH HOH . G 5 HOH A 47 1347 25 HOH HOH . G 5 HOH A 48 1348 17 HOH HOH . G 5 HOH A 49 1349 95 HOH HOH . G 5 HOH A 50 1350 221 HOH HOH . G 5 HOH A 51 1351 48 HOH HOH . G 5 HOH A 52 1352 120 HOH HOH . G 5 HOH A 53 1353 154 HOH HOH . G 5 HOH A 54 1354 96 HOH HOH . G 5 HOH A 55 1355 172 HOH HOH . G 5 HOH A 56 1356 33 HOH HOH . G 5 HOH A 57 1357 183 HOH HOH . G 5 HOH A 58 1358 104 HOH HOH . G 5 HOH A 59 1359 127 HOH HOH . G 5 HOH A 60 1360 89 HOH HOH . G 5 HOH A 61 1361 58 HOH HOH . G 5 HOH A 62 1362 119 HOH HOH . G 5 HOH A 63 1363 220 HOH HOH . G 5 HOH A 64 1364 185 HOH HOH . G 5 HOH A 65 1365 250 HOH HOH . G 5 HOH A 66 1366 81 HOH HOH . G 5 HOH A 67 1367 117 HOH HOH . G 5 HOH A 68 1368 148 HOH HOH . G 5 HOH A 69 1369 126 HOH HOH . G 5 HOH A 70 1370 23 HOH HOH . G 5 HOH A 71 1371 70 HOH HOH . G 5 HOH A 72 1372 38 HOH HOH . G 5 HOH A 73 1373 20 HOH HOH . G 5 HOH A 74 1374 215 HOH HOH . G 5 HOH A 75 1375 135 HOH HOH . G 5 HOH A 76 1376 115 HOH HOH . G 5 HOH A 77 1377 131 HOH HOH . G 5 HOH A 78 1378 40 HOH HOH . G 5 HOH A 79 1379 203 HOH HOH . G 5 HOH A 80 1380 124 HOH HOH . G 5 HOH A 81 1381 45 HOH HOH . G 5 HOH A 82 1382 62 HOH HOH . G 5 HOH A 83 1383 142 HOH HOH . G 5 HOH A 84 1384 19 HOH HOH . G 5 HOH A 85 1385 244 HOH HOH . G 5 HOH A 86 1386 43 HOH HOH . G 5 HOH A 87 1387 114 HOH HOH . G 5 HOH A 88 1388 198 HOH HOH . G 5 HOH A 89 1389 191 HOH HOH . G 5 HOH A 90 1390 187 HOH HOH . G 5 HOH A 91 1391 140 HOH HOH . G 5 HOH A 92 1392 59 HOH HOH . G 5 HOH A 93 1393 225 HOH HOH . G 5 HOH A 94 1394 229 HOH HOH . G 5 HOH A 95 1395 228 HOH HOH . G 5 HOH A 96 1396 201 HOH HOH . G 5 HOH A 97 1397 84 HOH HOH . G 5 HOH A 98 1398 122 HOH HOH . G 5 HOH A 99 1399 90 HOH HOH . G 5 HOH A 100 1400 226 HOH HOH . G 5 HOH A 101 1401 153 HOH HOH . G 5 HOH A 102 1402 71 HOH HOH . G 5 HOH A 103 1403 8 HOH HOH . G 5 HOH A 104 1404 227 HOH HOH . G 5 HOH A 105 1405 224 HOH HOH . G 5 HOH A 106 1406 223 HOH HOH . G 5 HOH A 107 1407 230 HOH HOH . G 5 HOH A 108 1408 249 HOH HOH . G 5 HOH A 109 1409 205 HOH HOH . G 5 HOH A 110 1410 163 HOH HOH . G 5 HOH A 111 1411 232 HOH HOH . G 5 HOH A 112 1412 243 HOH HOH . H 5 HOH B 1 1301 97 HOH HOH . H 5 HOH B 2 1302 102 HOH HOH . H 5 HOH B 3 1303 166 HOH HOH . H 5 HOH B 4 1304 247 HOH HOH . H 5 HOH B 5 1305 6 HOH HOH . H 5 HOH B 6 1306 107 HOH HOH . H 5 HOH B 7 1307 18 HOH HOH . H 5 HOH B 8 1308 100 HOH HOH . H 5 HOH B 9 1309 222 HOH HOH . H 5 HOH B 10 1310 26 HOH HOH . H 5 HOH B 11 1311 143 HOH HOH . H 5 HOH B 12 1312 30 HOH HOH . H 5 HOH B 13 1313 212 HOH HOH . H 5 HOH B 14 1314 210 HOH HOH . H 5 HOH B 15 1315 200 HOH HOH . H 5 HOH B 16 1316 4 HOH HOH . H 5 HOH B 17 1317 211 HOH HOH . H 5 HOH B 18 1318 190 HOH HOH . H 5 HOH B 19 1319 31 HOH HOH . H 5 HOH B 20 1320 182 HOH HOH . H 5 HOH B 21 1321 92 HOH HOH . H 5 HOH B 22 1322 94 HOH HOH . H 5 HOH B 23 1323 12 HOH HOH . H 5 HOH B 24 1324 179 HOH HOH . H 5 HOH B 25 1325 169 HOH HOH . H 5 HOH B 26 1326 77 HOH HOH . H 5 HOH B 27 1327 85 HOH HOH . H 5 HOH B 28 1328 123 HOH HOH . H 5 HOH B 29 1329 76 HOH HOH . H 5 HOH B 30 1330 213 HOH HOH . H 5 HOH B 31 1331 11 HOH HOH . H 5 HOH B 32 1332 79 HOH HOH . H 5 HOH B 33 1333 13 HOH HOH . H 5 HOH B 34 1334 219 HOH HOH . H 5 HOH B 35 1335 144 HOH HOH . H 5 HOH B 36 1336 27 HOH HOH . H 5 HOH B 37 1337 1 HOH HOH . H 5 HOH B 38 1338 14 HOH HOH . H 5 HOH B 39 1339 110 HOH HOH . H 5 HOH B 40 1340 91 HOH HOH . H 5 HOH B 41 1341 41 HOH HOH . H 5 HOH B 42 1342 10 HOH HOH . H 5 HOH B 43 1343 22 HOH HOH . H 5 HOH B 44 1344 189 HOH HOH . H 5 HOH B 45 1345 61 HOH HOH . H 5 HOH B 46 1346 109 HOH HOH . H 5 HOH B 47 1347 105 HOH HOH . H 5 HOH B 48 1348 253 HOH HOH . H 5 HOH B 49 1349 57 HOH HOH . H 5 HOH B 50 1350 186 HOH HOH . H 5 HOH B 51 1351 16 HOH HOH . H 5 HOH B 52 1352 252 HOH HOH . H 5 HOH B 53 1353 192 HOH HOH . H 5 HOH B 54 1354 134 HOH HOH . H 5 HOH B 55 1355 54 HOH HOH . H 5 HOH B 56 1356 118 HOH HOH . H 5 HOH B 57 1357 21 HOH HOH . H 5 HOH B 58 1358 2 HOH HOH . H 5 HOH B 59 1359 193 HOH HOH . H 5 HOH B 60 1360 128 HOH HOH . H 5 HOH B 61 1361 113 HOH HOH . H 5 HOH B 62 1362 149 HOH HOH . H 5 HOH B 63 1363 234 HOH HOH . H 5 HOH B 64 1364 87 HOH HOH . H 5 HOH B 65 1365 173 HOH HOH . H 5 HOH B 66 1366 53 HOH HOH . H 5 HOH B 67 1367 197 HOH HOH . H 5 HOH B 68 1368 152 HOH HOH . H 5 HOH B 69 1369 251 HOH HOH . H 5 HOH B 70 1370 47 HOH HOH . H 5 HOH B 71 1371 68 HOH HOH . H 5 HOH B 72 1372 82 HOH HOH . H 5 HOH B 73 1373 159 HOH HOH . H 5 HOH B 74 1374 3 HOH HOH . H 5 HOH B 75 1375 49 HOH HOH . H 5 HOH B 76 1376 5 HOH HOH . H 5 HOH B 77 1377 39 HOH HOH . H 5 HOH B 78 1378 158 HOH HOH . H 5 HOH B 79 1379 15 HOH HOH . H 5 HOH B 80 1380 74 HOH HOH . H 5 HOH B 81 1381 199 HOH HOH . H 5 HOH B 82 1382 51 HOH HOH . H 5 HOH B 83 1383 93 HOH HOH . H 5 HOH B 84 1384 50 HOH HOH . H 5 HOH B 85 1385 178 HOH HOH . H 5 HOH B 86 1386 132 HOH HOH . H 5 HOH B 87 1387 86 HOH HOH . H 5 HOH B 88 1388 116 HOH HOH . H 5 HOH B 89 1389 146 HOH HOH . H 5 HOH B 90 1390 83 HOH HOH . H 5 HOH B 91 1391 29 HOH HOH . H 5 HOH B 92 1392 184 HOH HOH . H 5 HOH B 93 1393 245 HOH HOH . H 5 HOH B 94 1394 188 HOH HOH . H 5 HOH B 95 1395 34 HOH HOH . H 5 HOH B 96 1396 88 HOH HOH . H 5 HOH B 97 1397 24 HOH HOH . H 5 HOH B 98 1398 141 HOH HOH . H 5 HOH B 99 1399 36 HOH HOH . H 5 HOH B 100 1400 168 HOH HOH . H 5 HOH B 101 1401 139 HOH HOH . H 5 HOH B 102 1402 9 HOH HOH . H 5 HOH B 103 1403 237 HOH HOH . H 5 HOH B 104 1404 150 HOH HOH . H 5 HOH B 105 1405 28 HOH HOH . H 5 HOH B 106 1406 167 HOH HOH . H 5 HOH B 107 1407 67 HOH HOH . H 5 HOH B 108 1408 204 HOH HOH . H 5 HOH B 109 1409 63 HOH HOH . H 5 HOH B 110 1410 69 HOH HOH . H 5 HOH B 111 1411 147 HOH HOH . H 5 HOH B 112 1412 195 HOH HOH . H 5 HOH B 113 1413 254 HOH HOH . H 5 HOH B 114 1414 196 HOH HOH . H 5 HOH B 115 1415 111 HOH HOH . H 5 HOH B 116 1416 206 HOH HOH . H 5 HOH B 117 1417 218 HOH HOH . H 5 HOH B 118 1418 42 HOH HOH . H 5 HOH B 119 1419 216 HOH HOH . H 5 HOH B 120 1420 236 HOH HOH . H 5 HOH B 121 1421 103 HOH HOH . H 5 HOH B 122 1422 240 HOH HOH . H 5 HOH B 123 1423 209 HOH HOH . H 5 HOH B 124 1424 175 HOH HOH . H 5 HOH B 125 1425 121 HOH HOH . H 5 HOH B 126 1426 136 HOH HOH . H 5 HOH B 127 1427 241 HOH HOH . H 5 HOH B 128 1428 56 HOH HOH . H 5 HOH B 129 1429 106 HOH HOH . H 5 HOH B 130 1430 214 HOH HOH . H 5 HOH B 131 1431 80 HOH HOH . H 5 HOH B 132 1432 133 HOH HOH . H 5 HOH B 133 1433 246 HOH HOH . H 5 HOH B 134 1434 75 HOH HOH . H 5 HOH B 135 1435 233 HOH HOH . H 5 HOH B 136 1436 239 HOH HOH . H 5 HOH B 137 1437 235 HOH HOH . H 5 HOH B 138 1438 64 HOH HOH . H 5 HOH B 139 1439 217 HOH HOH . H 5 HOH B 140 1440 238 HOH HOH . H 5 HOH B 141 1441 108 HOH HOH . H 5 HOH B 142 1442 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 17.565 -3.628 20.458 1 39.52 ? C1 EDO 1203 B 1 HETATM 2 O O1 EDO . . . F 4 18.253 -2.392 20.367 1 39.58 ? O1 EDO 1203 B 1 HETATM 3 C C2 EDO . . . F 4 18.341 -4.665 19.661 1 38.29 ? C2 EDO 1203 B 1 HETATM 4 O O2 EDO . . . F 4 17.451 -5.678 19.224 1 41.27 ? O2 EDO 1203 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #