data_6SMA # _model_server_result.job_id 5wq0vGnVuVdeMzDZidtgCQ _model_server_result.datetime_utc '2025-03-06 09:13:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sma # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":308}' # _entry.id 6SMA # _exptl.entry_id 6SMA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 79.904 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BROMIDE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 121.072 _cell.angle_gamma 90 _cell.entry_id 6SMA _cell.length_a 116.669 _cell.length_b 105.913 _cell.length_c 79.474 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SMA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J,K,R 1 1 B,F,G,L,S 2 1 C,H,I,M,N,O,P,Q,T 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUC NAG C1 O1 . O6 HO6 . sing 3 ? 3 2 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D NAG 1 D 1 NAG A 301 NAG 2 n D NAG 2 D 2 NAG A 302 NAG 2 n D FUC 3 D 3 FUC A 401 FUC 2 n E NAG 1 E 1 NAG A 303 NAG 2 n E NAG 2 E 2 NAG A 304 NAG 2 n E FUC 3 E 3 FUC A 402 FUC 2 n F NAG 1 F 1 NAG B 301 NAG 2 n F NAG 2 F 2 NAG B 302 NAG 2 n F FUC 3 F 3 FUC B 401 FUC 3 n G NAG 1 G 1 NAG B 303 NAG 3 n G FUC 2 G 2 FUC B 402 FUC 2 n H NAG 1 H 1 NAG C 301 NAG 2 n H NAG 2 H 2 NAG C 302 NAG 2 n H FUC 3 H 3 FUC C 401 FUC 2 n I NAG 1 I 1 NAG C 303 NAG 2 n I NAG 2 I 2 NAG C 304 NAG 2 n I FUC 3 I 3 FUC C 402 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 122 A CYS 136 1_555 A SG CYS 179 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 152 A CYS 168 1_555 A SG CYS 158 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 169 A CYS 191 1_555 A SG CYS 194 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 B SG CYS 26 B CYS 42 1_555 B SG CYS 42 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 122 B CYS 136 1_555 B SG CYS 179 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 B SG CYS 152 B CYS 168 1_555 B SG CYS 158 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 B SG CYS 169 B CYS 191 1_555 B SG CYS 194 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 C SG CYS 26 C CYS 42 1_555 C SG CYS 42 C CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 C SG CYS 122 C CYS 136 1_555 C SG CYS 179 C CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 C SG CYS 152 C CYS 168 1_555 C SG CYS 158 C CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf12 C SG CYS 169 C CYS 191 1_555 C SG CYS 194 C CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 95 A ASN 109 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.488 ? covale ? covale2 A ND2 ASN 144 A ASN 159 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale3 B ND2 ASN 95 B ASN 109 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 B ND2 ASN 144 B ASN 159 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale5 C ND2 ASN 95 C ASN 109 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale6 C ND2 ASN 144 C ASN 159 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale7 C OG SER 173 C SER 195 1_555 O S22 LKK . C LKK 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? covale ? covale9 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale10 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale11 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale12 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale13 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale14 G O6 NAG . G NAG 1 1_555 G C1 FUC . G FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale15 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale16 H O6 NAG . H NAG 1 1_555 H C1 FUC . H FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale17 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? covale ? covale18 I O6 NAG . I NAG 1 1_555 I C1 FUC . I FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? # _chem_comp.formula 'Br -1' _chem_comp.formula_weight 79.904 _chem_comp.id BR _chem_comp.mon_nstd_flag . _chem_comp.name 'BROMIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6SMA _atom_sites.fract_transf_matrix[1][1] 0.008571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005165 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014691 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 BR A 1 307 501 BR BR . K 4 BR A 1 308 502 BR BR . L 4 BR B 1 306 501 BR BR . M 4 BR C 1 307 501 BR BR . N 4 BR C 1 308 502 BR BR . O 5 LKK C 1 309 601 LKK 011 . P 6 EDO C 1 310 701 EDO EDO . Q 6 EDO C 1 311 702 EDO EDO . R 7 HOH A 1 401 94 HOH HOH . R 7 HOH A 2 402 48 HOH HOH . R 7 HOH A 3 403 61 HOH HOH . R 7 HOH A 4 404 84 HOH HOH . R 7 HOH A 5 405 30 HOH HOH . R 7 HOH A 6 406 11 HOH HOH . R 7 HOH A 7 407 19 HOH HOH . R 7 HOH A 8 408 40 HOH HOH . R 7 HOH A 9 409 92 HOH HOH . R 7 HOH A 10 410 73 HOH HOH . R 7 HOH A 11 411 75 HOH HOH . R 7 HOH A 12 412 101 HOH HOH . R 7 HOH A 13 413 31 HOH HOH . R 7 HOH A 14 414 71 HOH HOH . R 7 HOH A 15 415 85 HOH HOH . R 7 HOH A 16 416 68 HOH HOH . R 7 HOH A 17 417 60 HOH HOH . R 7 HOH A 18 418 46 HOH HOH . R 7 HOH A 19 419 44 HOH HOH . R 7 HOH A 20 420 100 HOH HOH . R 7 HOH A 21 421 12 HOH HOH . R 7 HOH A 22 422 57 HOH HOH . R 7 HOH A 23 423 27 HOH HOH . R 7 HOH A 24 424 81 HOH HOH . R 7 HOH A 25 425 25 HOH HOH . R 7 HOH A 26 426 109 HOH HOH . R 7 HOH A 27 427 91 HOH HOH . R 7 HOH A 28 428 77 HOH HOH . R 7 HOH A 29 429 104 HOH HOH . R 7 HOH A 30 430 97 HOH HOH . R 7 HOH A 31 431 41 HOH HOH . R 7 HOH A 32 432 83 HOH HOH . S 7 HOH B 1 401 95 HOH HOH . S 7 HOH B 2 402 5 HOH HOH . S 7 HOH B 3 403 37 HOH HOH . S 7 HOH B 4 404 9 HOH HOH . S 7 HOH B 5 405 108 HOH HOH . S 7 HOH B 6 406 13 HOH HOH . S 7 HOH B 7 407 10 HOH HOH . S 7 HOH B 8 408 16 HOH HOH . S 7 HOH B 9 409 3 HOH HOH . S 7 HOH B 10 410 24 HOH HOH . S 7 HOH B 11 411 64 HOH HOH . S 7 HOH B 12 412 33 HOH HOH . S 7 HOH B 13 413 59 HOH HOH . S 7 HOH B 14 414 76 HOH HOH . S 7 HOH B 15 415 67 HOH HOH . S 7 HOH B 16 416 14 HOH HOH . S 7 HOH B 17 417 80 HOH HOH . S 7 HOH B 18 418 20 HOH HOH . S 7 HOH B 19 419 54 HOH HOH . S 7 HOH B 20 420 99 HOH HOH . S 7 HOH B 21 421 105 HOH HOH . T 7 HOH C 1 401 96 HOH HOH . T 7 HOH C 2 402 4 HOH HOH . T 7 HOH C 3 403 78 HOH HOH . T 7 HOH C 4 404 74 HOH HOH . T 7 HOH C 5 405 7 HOH HOH . T 7 HOH C 6 406 17 HOH HOH . T 7 HOH C 7 407 43 HOH HOH . T 7 HOH C 8 408 1 HOH HOH . T 7 HOH C 9 409 6 HOH HOH . T 7 HOH C 10 410 32 HOH HOH . T 7 HOH C 11 411 56 HOH HOH . T 7 HOH C 12 412 21 HOH HOH . T 7 HOH C 13 413 15 HOH HOH . T 7 HOH C 14 414 22 HOH HOH . T 7 HOH C 15 415 62 HOH HOH . T 7 HOH C 16 416 26 HOH HOH . T 7 HOH C 17 417 23 HOH HOH . T 7 HOH C 18 418 2 HOH HOH . T 7 HOH C 19 419 72 HOH HOH . T 7 HOH C 20 420 45 HOH HOH . T 7 HOH C 21 421 8 HOH HOH . T 7 HOH C 22 422 58 HOH HOH . T 7 HOH C 23 423 47 HOH HOH . T 7 HOH C 24 424 88 HOH HOH . T 7 HOH C 25 425 89 HOH HOH . T 7 HOH C 26 426 50 HOH HOH . T 7 HOH C 27 427 70 HOH HOH . T 7 HOH C 28 428 18 HOH HOH . T 7 HOH C 29 429 65 HOH HOH . T 7 HOH C 30 430 90 HOH HOH . T 7 HOH C 31 431 42 HOH HOH . T 7 HOH C 32 432 28 HOH HOH . T 7 HOH C 33 433 55 HOH HOH . T 7 HOH C 34 434 35 HOH HOH . T 7 HOH C 35 435 39 HOH HOH . T 7 HOH C 36 436 52 HOH HOH . T 7 HOH C 37 437 38 HOH HOH . T 7 HOH C 38 438 51 HOH HOH . T 7 HOH C 39 439 103 HOH HOH . T 7 HOH C 40 440 29 HOH HOH . T 7 HOH C 41 441 49 HOH HOH . T 7 HOH C 42 442 79 HOH HOH . T 7 HOH C 43 443 63 HOH HOH . T 7 HOH C 44 444 69 HOH HOH . T 7 HOH C 45 445 86 HOH HOH . T 7 HOH C 46 446 82 HOH HOH . T 7 HOH C 47 447 66 HOH HOH . T 7 HOH C 48 448 53 HOH HOH . T 7 HOH C 49 449 110 HOH HOH . T 7 HOH C 50 450 106 HOH HOH . T 7 HOH C 51 451 102 HOH HOH . T 7 HOH C 52 452 107 HOH HOH . T 7 HOH C 53 453 98 HOH HOH . T 7 HOH C 54 454 93 HOH HOH . T 7 HOH C 55 455 87 HOH HOH . T 7 HOH C 56 456 34 HOH HOH . T 7 HOH C 57 457 36 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol BR _atom_site.label_atom_id BR _atom_site.label_comp_id BR _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 4 _atom_site.Cartn_x 9.404 _atom_site.Cartn_y -3.983 _atom_site.Cartn_z 32.577 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 78.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id BR _atom_site.auth_comp_id BR _atom_site.auth_seq_id 308 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #