data_6SNC # _model_server_result.job_id yjidyzPR5iwcI2K5-k-czw _model_server_result.datetime_utc '2024-11-22 06:25:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6snc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":300}' # _entry.id 6SNC # _exptl.entry_id 6SNC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SNC _cell.length_a 136.762 _cell.length_b 136.762 _cell.length_c 146.908 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SNC _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,M 1 1 C,D,E,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 A SG CYS 134 A CYS 134 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 97 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 B SG CYS 155 B CYS 140 1_555 B SG CYS 211 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf5 C SG CYS 23 L CYS 23 1_555 C SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf6 C SG CYS 134 L CYS 134 1_555 C SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 D SG CYS 22 H CYS 22 1_555 D SG CYS 97 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf8 D SG CYS 155 H CYS 140 1_555 D SG CYS 211 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A ND2 ASN 107 A ASN 107 1_555 G C1 NAG . A NAG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.577 ? covale ? covale2 C ND2 ASN 107 L ASN 107 1_555 J C1 NAG . L NAG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 295 n n C1 O1 NAG sing 296 n n C1 O5 NAG sing 297 n n C1 H1 NAG sing 298 n n C2 C3 NAG sing 299 n n C2 N2 NAG sing 300 n n C2 H2 NAG sing 301 n n C3 C4 NAG sing 302 n n C3 O3 NAG sing 303 n n C3 H3 NAG sing 304 n n C4 C5 NAG sing 305 n n C4 O4 NAG sing 306 n n C4 H4 NAG sing 307 n n C5 C6 NAG sing 308 n n C5 O5 NAG sing 309 n n C5 H5 NAG sing 310 n n C6 O6 NAG sing 311 n n C6 H61 NAG sing 312 n n C6 H62 NAG sing 313 n n C7 C8 NAG sing 314 n n C7 N2 NAG sing 315 n n C7 O7 NAG doub 316 n n C8 H81 NAG sing 317 n n C8 H82 NAG sing 318 n n C8 H83 NAG sing 319 n n N2 HN2 NAG sing 320 n n O1 HO1 NAG sing 321 n n O3 HO3 NAG sing 322 n n O4 HO4 NAG sing 323 n n O6 HO6 NAG sing 324 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6SNC _atom_sites.fract_transf_matrix[1][1] 0.007312 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006807 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 300 300 NAG NAG . H 5 PO4 B 1 301 1 PO4 PO4 . I 5 PO4 B 1 302 2 PO4 PO4 . J 4 NAG L 1 300 300 NAG NAG . K 6 DPV H 1 301 1 DPV DPV . L 7 PC P 1 701 1 PC PC . M 7 PC C 1 701 2 PC PC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 4 28.52 -42.058 15.385 1 106.79 ? C1 NAG 300 A 1 HETATM 2 C C2 NAG . . . G 4 29.305 -40.77 15.157 1 106.95 ? C2 NAG 300 A 1 HETATM 3 C C3 NAG . . . G 4 30.804 -41.004 15.287 1 109.78 ? C3 NAG 300 A 1 HETATM 4 C C4 NAG . . . G 4 31.103 -41.699 16.606 1 111.7 ? C4 NAG 300 A 1 HETATM 5 C C5 NAG . . . G 4 30.279 -42.974 16.72 1 111.22 ? C5 NAG 300 A 1 HETATM 6 C C6 NAG . . . G 4 30.552 -43.68 18.043 1 110.26 ? C6 NAG 300 A 1 HETATM 7 C C7 NAG . . . G 4 27.945 -39.441 13.648 1 103.56 ? C7 NAG 300 A 1 HETATM 8 C C8 NAG . . . G 4 27.707 -39.021 12.228 1 102.09 ? C8 NAG 300 A 1 HETATM 9 N N2 NAG . . . G 4 29.001 -40.225 13.848 1 105.17 ? N2 NAG 300 A 1 HETATM 10 O O3 NAG . . . G 4 31.492 -39.75 15.237 1 110.18 ? O3 NAG 300 A 1 HETATM 11 O O4 NAG . . . G 4 32.497 -42.021 16.674 1 109.96 ? O4 NAG 300 A 1 HETATM 12 O O5 NAG . . . G 4 28.886 -42.673 16.622 1 108.87 ? O5 NAG 300 A 1 HETATM 13 O O6 NAG . . . G 4 31.964 -43.856 18.207 1 107.18 ? O6 NAG 300 A 1 HETATM 14 O O7 NAG . . . G 4 27.218 -39.086 14.561 1 104.38 ? O7 NAG 300 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #