data_6SNC # _model_server_result.job_id Jyqi-rvZ2S2I8GNDzXGhlA _model_server_result.datetime_utc '2024-11-22 05:57:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6snc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 6SNC # _exptl.entry_id 6SNC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.462 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'dodecyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SNC _cell.length_a 136.762 _cell.length_b 136.762 _cell.length_c 146.908 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SNC _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,M 1 1 C,D,E,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 A SG CYS 134 A CYS 134 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 97 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 B SG CYS 155 B CYS 140 1_555 B SG CYS 211 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf5 C SG CYS 23 L CYS 23 1_555 C SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf6 C SG CYS 134 L CYS 134 1_555 C SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 D SG CYS 22 H CYS 22 1_555 D SG CYS 97 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf8 D SG CYS 155 H CYS 140 1_555 D SG CYS 211 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A ND2 ASN 107 A ASN 107 1_555 G C1 NAG . A NAG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.577 ? covale ? covale2 C ND2 ASN 107 L ASN 107 1_555 J C1 NAG . L NAG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? # _chem_comp.formula 'C17 H38 N O4 P' _chem_comp.formula_weight 351.462 _chem_comp.id DPV _chem_comp.mon_nstd_flag . _chem_comp.name 'dodecyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms dodecylphosphocholine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C5 DPV sing 83 n n N C6 DPV sing 84 n n N C7 DPV sing 85 n n N C8 DPV sing 86 n n P O1P DPV sing 87 n n P O2P DPV doub 88 n n P O3P DPV sing 89 n n P O4P DPV sing 90 n n C1 C2 DPV sing 91 n n C1 O3P DPV sing 92 n n C2 C3 DPV sing 93 n n C3 C15 DPV sing 94 n n C4 C5 DPV sing 95 n n C4 O4P DPV sing 96 n n C15 C16 DPV sing 97 n n C16 C17 DPV sing 98 n n C17 C18 DPV sing 99 n n C18 C19 DPV sing 100 n n C19 C20 DPV sing 101 n n C20 C21 DPV sing 102 n n C21 C22 DPV sing 103 n n C22 C23 DPV sing 104 n n C1 H1 DPV sing 105 n n C1 H1A DPV sing 106 n n C2 H2 DPV sing 107 n n C2 H2A DPV sing 108 n n C3 H3 DPV sing 109 n n C3 H3A DPV sing 110 n n C4 H4 DPV sing 111 n n C4 H4A DPV sing 112 n n C5 H5 DPV sing 113 n n C5 H5A DPV sing 114 n n C6 H6 DPV sing 115 n n C6 H6A DPV sing 116 n n C6 H6B DPV sing 117 n n C7 H7 DPV sing 118 n n C7 H7A DPV sing 119 n n C7 H7B DPV sing 120 n n C8 H8 DPV sing 121 n n C8 H8A DPV sing 122 n n C8 H8B DPV sing 123 n n C15 H15 DPV sing 124 n n C15 H15A DPV sing 125 n n C16 H16 DPV sing 126 n n C16 H16A DPV sing 127 n n C17 H17 DPV sing 128 n n C17 H17A DPV sing 129 n n C18 H18 DPV sing 130 n n C18 H18A DPV sing 131 n n C19 H19 DPV sing 132 n n C19 H19A DPV sing 133 n n C20 H20 DPV sing 134 n n C20 H20A DPV sing 135 n n C21 H21 DPV sing 136 n n C21 H21A DPV sing 137 n n C22 H22 DPV sing 138 n n C22 H22A DPV sing 139 n n C23 H23 DPV sing 140 n n C23 H23A DPV sing 141 n n C23 H23B DPV sing 142 n n # _atom_sites.entry_id 6SNC _atom_sites.fract_transf_matrix[1][1] 0.007312 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006807 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 300 300 NAG NAG . H 5 PO4 B 1 301 1 PO4 PO4 . I 5 PO4 B 1 302 2 PO4 PO4 . J 4 NAG L 1 300 300 NAG NAG . K 6 DPV H 1 301 1 DPV DPV . L 7 PC P 1 701 1 PC PC . M 7 PC C 1 701 2 PC PC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DPV . . . K 6 19.631 -21.665 -32.198 1 134.36 ? N DPV 301 H 1 HETATM 2 P P DPV . . . K 6 16.422 -18.828 -34.21 1 134.36 ? P DPV 301 H 1 HETATM 3 C C1 DPV . . . K 6 16.025 -19.177 -36.798 1 134.36 ? C1 DPV 301 H 1 HETATM 4 C C2 DPV . . . K 6 16.371 -20.252 -37.828 1 134.36 ? C2 DPV 301 H 1 HETATM 5 C C3 DPV . . . K 6 15.268 -21.28 -37.963 1 134.36 ? C3 DPV 301 H 1 HETATM 6 C C4 DPV . . . K 6 17.529 -20.916 -33.255 1 134.36 ? C4 DPV 301 H 1 HETATM 7 C C5 DPV . . . K 6 18.317 -21.058 -31.958 1 134.36 ? C5 DPV 301 H 1 HETATM 8 C C6 DPV . . . K 6 19.636 -22.491 -33.407 1 134.36 ? C6 DPV 301 H 1 HETATM 9 C C7 DPV . . . K 6 20.604 -20.589 -32.377 1 134.36 ? C7 DPV 301 H 1 HETATM 10 C C8 DPV . . . K 6 20.019 -22.485 -31.054 1 134.36 ? C8 DPV 301 H 1 HETATM 11 C C15 DPV . . . K 6 13.936 -20.602 -37.709 1 134.36 ? C15 DPV 301 H 1 HETATM 12 C C16 DPV . . . K 6 13.496 -20.77 -36.268 1 134.36 ? C16 DPV 301 H 1 HETATM 13 C C17 DPV . . . K 6 12.608 -21.994 -36.146 1 134.36 ? C17 DPV 301 H 1 HETATM 14 C C18 DPV . . . K 6 11.205 -21.672 -36.631 1 134.36 ? C18 DPV 301 H 1 HETATM 15 C C19 DPV . . . K 6 10.487 -22.932 -37.089 1 134.36 ? C19 DPV 301 H 1 HETATM 16 O O1P DPV . . . K 6 17.825 -18.37 -34.424 1 134.36 ? O1P DPV 301 H 1 HETATM 17 C C20 DPV . . . K 6 9.009 -22.656 -37.304 1 134.36 ? C20 DPV 301 H 1 HETATM 18 C C21 DPV . . . K 6 8.274 -23.944 -37.628 1 134.36 ? C21 DPV 301 H 1 HETATM 19 C C22 DPV . . . K 6 6.83 -23.861 -37.162 1 134.36 ? C22 DPV 301 H 1 HETATM 20 C C23 DPV . . . K 6 6.212 -22.547 -37.579 1 134.36 ? C23 DPV 301 H 1 HETATM 21 O O2P DPV . . . K 6 15.366 -17.842 -33.835 1 134.36 ? O2P DPV 301 H 1 HETATM 22 O O3P DPV . . . K 6 15.984 -19.702 -35.472 1 134.36 ? O3P DPV 301 H 1 HETATM 23 O O4P DPV . . . K 6 16.469 -19.98 -33.126 1 134.36 ? O4P DPV 301 H 1 # _model_server_stats.io_time_ms 126 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 23 #