data_6SND
#
_model_server_result.job_id            8voQeJ1QXHdb501yv6Cq-g 
_model_server_result.datetime_utc      '2024-11-24 18:56:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6snd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":301}' 
#
_entry.id    6SND 
#
_exptl.entry_id    6SND 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              455.437 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6SND 
_cell.length_a            137.707 
_cell.length_b            137.707 
_cell.length_c            146.719 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SND 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    'P 4nw 2abw' 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H 1 1 
D,E,F,I,J,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 A SG CYS 134 A CYS 134 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 97 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 B SG CYS 155 B CYS 140 1_555 B SG CYS 211 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf5 D SG CYS 23 L CYS 23 1_555 D SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf6 D SG CYS 134 L CYS 134 1_555 D SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 E SG CYS 22 H CYS 22 1_555 E SG CYS 97 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf8 E SG CYS 155 H CYS 140 1_555 E SG CYS 211 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A ND2 ASN 107 A ASN 107 1_555 G C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale2 D ND2 ASN 107 L ASN 107 1_555 I C1 NAG . L NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
#
_chem_comp.formula           'C18 H34 N O10 P' 
_chem_comp.formula_weight    455.437 
_chem_comp.id                PSF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PHOSPHATIDYLSERINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 P PSF sing 390 n n 
O2 C2 PSF sing 391 n n 
O1 P PSF sing 392 n n 
O1 CB PSF sing 393 n n 
P O4 PSF doub 394 n n 
P O3 PSF sing 395 n n 
O3 HO3 PSF sing 396 n n 
C2 C3 PSF sing 397 n n 
C2 H21 PSF sing 398 n n 
C2 H22 PSF sing 399 n n 
C3 O11 PSF sing 400 n n 
C3 C4 PSF sing 401 n n 
C3 H31 PSF sing 402 n n 
O11 C1 PSF sing 403 n n 
O12 C1 PSF doub 404 n n 
C1 C13 PSF sing 405 n n 
C4 O52 PSF sing 406 n n 
C4 H41 PSF sing 407 n n 
C4 H42 PSF sing 408 n n 
C5 O51 PSF doub 409 n n 
C5 O52 PSF sing 410 n n 
C5 C6 PSF sing 411 n n 
C6 C7 PSF sing 412 n n 
C6 H61 PSF sing 413 n n 
C6 H62 PSF sing 414 n n 
C7 C8 PSF sing 415 n n 
C7 H71 PSF sing 416 n n 
C7 H72 PSF sing 417 n n 
C13 C14 PSF sing 418 n n 
C13 H131 PSF sing 419 n n 
C13 H132 PSF sing 420 n n 
C14 C15 PSF sing 421 n n 
C14 H141 PSF sing 422 n n 
C14 H142 PSF sing 423 n n 
C15 C16 PSF sing 424 n n 
C15 H151 PSF sing 425 n n 
C15 H152 PSF sing 426 n n 
N CA PSF sing 427 n n 
N H1 PSF sing 428 n n 
N H2 PSF sing 429 n n 
CA CB PSF sing 430 n n 
CA C PSF sing 431 n n 
CA HA PSF sing 432 n n 
CB HB1 PSF sing 433 n n 
CB HB2 PSF sing 434 n n 
C OT1 PSF doub 435 n n 
C OT2 PSF sing 436 n n 
OT2 HXT PSF sing 437 n n 
C8 C9 PSF sing 438 n n 
C8 H81 PSF sing 439 n n 
C8 H82 PSF sing 440 n n 
C9 C10 PSF sing 441 n n 
C9 H91 PSF sing 442 n n 
C9 H92 PSF sing 443 n n 
C10 H101 PSF sing 444 n n 
C10 H102 PSF sing 445 n n 
C10 H103 PSF sing 446 n n 
C16 C17 PSF sing 447 n n 
C16 H161 PSF sing 448 n n 
C16 H162 PSF sing 449 n n 
C17 H171 PSF sing 450 n n 
C17 H172 PSF sing 451 n n 
C17 H173 PSF sing 452 n n 
#
_atom_sites.entry_id                     6SND 
_atom_sites.fract_transf_matrix[1][1]    0.007262 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007262 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006816 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NAG A 1 301 300 NAG NAG . 
H 5 DPV A 1 302 1 DPV DPV . 
I 4 NAG L 1 301 300 NAG NAG . 
J 6 PC L 1 302 1 PC PC . 
K 7 PSF H 1 301 301 PSF PSF . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 PSF . . . K 7 17.266 -21.134 -35.343 1 104.07 ? O2 PSF 301 H 1 
HETATM 2 O O1 PSF . . . K 7 17.926 -20.747 -32.809 1 104.07 ? O1 PSF 301 H 1 
HETATM 3 P P PSF . . . K 7 17.692 -19.989 -34.243 1 104.07 ? P PSF 301 H 1 
HETATM 4 O O4 PSF . . . K 7 18.974 -19.331 -34.671 1 104.07 ? O4 PSF 301 H 1 
HETATM 5 O O3 PSF . . . K 7 16.6 -18.954 -34.148 1 104.07 ? O3 PSF 301 H 1 
HETATM 6 C C2 PSF . . . K 7 16.081 -21.855 -35.144 1 104.07 ? C2 PSF 301 H 1 
HETATM 7 C C3 PSF . . . K 7 15.073 -21.62 -36.271 1 104.07 ? C3 PSF 301 H 1 
HETATM 8 O O11 PSF . . . K 7 15.738 -21.29 -37.462 1 104.07 ? O11 PSF 301 H 1 
HETATM 9 O O12 PSF . . . K 7 16.726 -22.179 -39.267 1 104.07 ? O12 PSF 301 H 1 
HETATM 10 C C1 PSF . . . K 7 16.074 -22.368 -38.302 1 104.07 ? C1 PSF 301 H 1 
HETATM 11 C C4 PSF . . . K 7 14.105 -20.511 -35.848 1 104.07 ? C4 PSF 301 H 1 
HETATM 12 C C5 PSF . . . K 7 12.017 -21.47 -36.37 1 104.07 ? C5 PSF 301 H 1 
HETATM 13 O O51 PSF . . . K 7 12.2 -22.231 -35.492 1 104.07 ? O51 PSF 301 H 1 
HETATM 14 O O52 PSF . . . K 7 13.005 -20.535 -36.72 1 104.07 ? O52 PSF 301 H 1 
HETATM 15 C C6 PSF . . . K 7 10.683 -21.534 -37.122 1 104.07 ? C6 PSF 301 H 1 
HETATM 16 C C7 PSF . . . K 7 9.748 -22.536 -36.455 1 104.07 ? C7 PSF 301 H 1 
HETATM 17 C C13 PSF . . . K 7 15.621 -23.797 -37.988 1 104.07 ? C13 PSF 301 H 1 
HETATM 18 C C14 PSF . . . K 7 14.165 -24.023 -38.412 1 104.07 ? C14 PSF 301 H 1 
HETATM 19 C C15 PSF . . . K 7 13.502 -24.994 -37.435 1 104.07 ? C15 PSF 301 H 1 
HETATM 20 N N PSF . . . K 7 20.566 -23.26 -33.285 1 104.07 ? N PSF 301 H 1 
HETATM 21 C CA PSF . . . K 7 19.963 -21.935 -33.272 1 104.07 ? CA PSF 301 H 1 
HETATM 22 C CB PSF . . . K 7 18.513 -22.016 -32.795 1 104.07 ? CB PSF 301 H 1 
HETATM 23 C C PSF . . . K 7 20.764 -21.008 -32.358 1 104.07 ? C PSF 301 H 1 
HETATM 24 O OT1 PSF . . . K 7 21.765 -21.456 -31.745 1 104.07 ? OT1 PSF 301 H 1 
HETATM 25 O OT2 PSF . . . K 7 20.423 -19.799 -32.23 1 104.07 ? OT2 PSF 301 H 1 
HETATM 26 C C8 PSF . . . K 7 8.758 -23.086 -37.472 1 104.07 ? C8 PSF 301 H 1 
HETATM 27 C C9 PSF . . . K 7 7.431 -22.342 -37.313 1 104.07 ? C9 PSF 301 H 1 
HETATM 28 C C10 PSF . . . K 7 6.339 -23.319 -36.861 1 104.07 ? C10 PSF 301 H 1 
HETATM 29 C C16 PSF . . . K 7 11.983 -24.859 -37.546 1 104.07 ? C16 PSF 301 H 1 
HETATM 30 C C17 PSF . . . K 7 11.526 -24.912 -39.001 1 104.07 ? C17 PSF 301 H 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           30 
#