data_6SND # _model_server_result.job_id H0aN3ptYV5n8e60OTiqe-w _model_server_result.datetime_utc '2024-11-24 19:01:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6snd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":302}' # _entry.id 6SND # _exptl.entry_id 6SND _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.462 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'dodecyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SND _cell.length_a 137.707 _cell.length_b 137.707 _cell.length_c 146.719 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SND _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H 1 1 D,E,F,I,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 134 A CYS 134 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 97 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 155 B CYS 140 1_555 B SG CYS 211 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 D SG CYS 23 L CYS 23 1_555 D SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 D SG CYS 134 L CYS 134 1_555 D SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 E SG CYS 22 H CYS 22 1_555 E SG CYS 97 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 E SG CYS 155 H CYS 140 1_555 E SG CYS 211 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 107 A ASN 107 1_555 G C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 D ND2 ASN 107 L ASN 107 1_555 I C1 NAG . L NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C17 H38 N O4 P' _chem_comp.formula_weight 351.462 _chem_comp.id DPV _chem_comp.mon_nstd_flag . _chem_comp.name 'dodecyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms dodecylphosphocholine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C5 DPV sing 83 n n N C6 DPV sing 84 n n N C7 DPV sing 85 n n N C8 DPV sing 86 n n P O1P DPV sing 87 n n P O2P DPV doub 88 n n P O3P DPV sing 89 n n P O4P DPV sing 90 n n C1 C2 DPV sing 91 n n C1 O3P DPV sing 92 n n C2 C3 DPV sing 93 n n C3 C15 DPV sing 94 n n C4 C5 DPV sing 95 n n C4 O4P DPV sing 96 n n C15 C16 DPV sing 97 n n C16 C17 DPV sing 98 n n C17 C18 DPV sing 99 n n C18 C19 DPV sing 100 n n C19 C20 DPV sing 101 n n C20 C21 DPV sing 102 n n C21 C22 DPV sing 103 n n C22 C23 DPV sing 104 n n C1 H1 DPV sing 105 n n C1 H1A DPV sing 106 n n C2 H2 DPV sing 107 n n C2 H2A DPV sing 108 n n C3 H3 DPV sing 109 n n C3 H3A DPV sing 110 n n C4 H4 DPV sing 111 n n C4 H4A DPV sing 112 n n C5 H5 DPV sing 113 n n C5 H5A DPV sing 114 n n C6 H6 DPV sing 115 n n C6 H6A DPV sing 116 n n C6 H6B DPV sing 117 n n C7 H7 DPV sing 118 n n C7 H7A DPV sing 119 n n C7 H7B DPV sing 120 n n C8 H8 DPV sing 121 n n C8 H8A DPV sing 122 n n C8 H8B DPV sing 123 n n C15 H15 DPV sing 124 n n C15 H15A DPV sing 125 n n C16 H16 DPV sing 126 n n C16 H16A DPV sing 127 n n C17 H17 DPV sing 128 n n C17 H17A DPV sing 129 n n C18 H18 DPV sing 130 n n C18 H18A DPV sing 131 n n C19 H19 DPV sing 132 n n C19 H19A DPV sing 133 n n C20 H20 DPV sing 134 n n C20 H20A DPV sing 135 n n C21 H21 DPV sing 136 n n C21 H21A DPV sing 137 n n C22 H22 DPV sing 138 n n C22 H22A DPV sing 139 n n C23 H23 DPV sing 140 n n C23 H23A DPV sing 141 n n C23 H23B DPV sing 142 n n # _atom_sites.entry_id 6SND _atom_sites.fract_transf_matrix[1][1] 0.007262 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 301 300 NAG NAG . H 5 DPV A 1 302 1 DPV DPV . I 4 NAG L 1 301 300 NAG NAG . J 6 PC L 1 302 1 PC PC . K 7 PSF H 1 301 301 PSF PSF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DPV . . . H 5 4.592 -14.959 28.923 1 78.58 ? N DPV 302 A 1 HETATM 2 P P DPV . . . H 5 7.515 -14.954 32.425 1 78.58 ? P DPV 302 A 1 HETATM 3 C C1 DPV . . . H 5 5.975 -13.589 34.074 1 78.58 ? C1 DPV 302 A 1 HETATM 4 C C2 DPV . . . H 5 6.785 -12.366 34.497 1 78.58 ? C2 DPV 302 A 1 HETATM 5 C C3 DPV . . . H 5 5.857 -11.263 34.999 1 78.58 ? C3 DPV 302 A 1 HETATM 6 C C4 DPV . . . H 5 6.733 -14.432 30 1 78.58 ? C4 DPV 302 A 1 HETATM 7 C C5 DPV . . . H 5 5.471 -15.296 30.028 1 78.58 ? C5 DPV 302 A 1 HETATM 8 C C6 DPV . . . H 5 3.368 -15.726 29.038 1 78.58 ? C6 DPV 302 A 1 HETATM 9 C C7 DPV . . . H 5 4.286 -13.54 28.941 1 78.58 ? C7 DPV 302 A 1 HETATM 10 C C8 DPV . . . H 5 5.236 -15.299 27.671 1 78.58 ? C8 DPV 302 A 1 HETATM 11 C C15 DPV . . . H 5 6.68 -9.986 35.151 1 78.58 ? C15 DPV 302 A 1 HETATM 12 C C16 DPV . . . H 5 5.748 -8.779 35.184 1 78.58 ? C16 DPV 302 A 1 HETATM 13 C C17 DPV . . . H 5 6.57 -7.504 35 1 78.58 ? C17 DPV 302 A 1 HETATM 14 C C18 DPV . . . H 5 5.873 -6.576 34.005 1 78.58 ? C18 DPV 302 A 1 HETATM 15 C C19 DPV . . . H 5 4.953 -5.602 34.742 1 78.58 ? C19 DPV 302 A 1 HETATM 16 O O1P DPV . . . H 5 8.801 -14.479 33.059 1 78.58 ? O1P DPV 302 A 1 HETATM 17 C C20 DPV . . . H 5 3.514 -6.116 34.696 1 78.58 ? C20 DPV 302 A 1 HETATM 18 C C21 DPV . . . H 5 2.574 -5.08 35.311 1 78.58 ? C21 DPV 302 A 1 HETATM 19 C C22 DPV . . . H 5 1.2 -5.217 34.66 1 78.58 ? C22 DPV 302 A 1 HETATM 20 C C23 DPV . . . H 5 0.633 -3.83 34.368 1 78.58 ? C23 DPV 302 A 1 HETATM 21 O O2P DPV . . . H 5 7.154 -16.316 32.969 1 78.58 ? O2P DPV 302 A 1 HETATM 22 O O3P DPV . . . H 5 6.295 -13.89 32.747 1 78.58 ? O3P DPV 302 A 1 HETATM 23 O O4P DPV . . . H 5 7.708 -15.048 30.792 1 78.58 ? O4P DPV 302 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #