data_6SNH
#
_model_server_result.job_id            oBqTU8MNccAycFyoX8GqSw 
_model_server_result.datetime_utc      '2025-03-04 09:24:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6snh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    6SNH 
#
_exptl.entry_id    6SNH 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              602.737 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'glucosyl-dolichol phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6SNH 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SNH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 332 X CYS 314 1_555 A SG CYS 533 X CYS 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 B SG CYS 25 H CYS 22 1_555 B SG CYS 99 H CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 B SG CYS 153 H CYS 149 1_555 B SG CYS 209 H CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf4 C SG CYS 24 L CYS 23 1_555 C SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf5 C SG CYS 137 L CYS 136 1_555 C SG CYS 197 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
#
_chem_comp.formula           'C31 H55 O9 P' 
_chem_comp.formula_weight    602.737 
_chem_comp.id                LMH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'glucosyl-dolichol phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O35 C34 LMH sing 194 n n 
C23 C22 LMH sing 195 n n 
C34 C33 LMH sing 196 n n 
C21 C22 LMH sing 197 n n 
C21 C20 LMH sing 198 n n 
C19 C20 LMH sing 199 n n 
C19 C17 LMH doub 200 z n 
C22 C24 LMH sing 201 n n 
C18 C17 LMH sing 202 n n 
C17 C16 LMH sing 203 n n 
O37 C36 LMH sing 204 n n 
C33 C36 LMH sing 205 n n 
C33 O32 LMH sing 206 n n 
C36 C38 LMH sing 207 n n 
C24 C25 LMH sing 208 n n 
O32 C31 LMH sing 209 n n 
C16 C15 LMH sing 210 n n 
C25 O26 LMH sing 211 n n 
C38 O39 LMH sing 212 n n 
C38 C40 LMH sing 213 n n 
O26 P27 LMH sing 214 n n 
C15 C14 LMH sing 215 n n 
C31 C40 LMH sing 216 n n 
C31 O30 LMH sing 217 n n 
C40 O41 LMH sing 218 n n 
O30 P27 LMH sing 219 n n 
C14 C12 LMH doub 220 z n 
P27 O28 LMH doub 221 n n 
P27 O29 LMH sing 222 n n 
C12 C11 LMH sing 223 n n 
C12 C13 LMH sing 224 n n 
C11 C10 LMH sing 225 n n 
C10 C09 LMH sing 226 n n 
C09 C07 LMH doub 227 e n 
C07 C08 LMH sing 228 n n 
C07 C06 LMH sing 229 n n 
C06 C05 LMH sing 230 n n 
C05 C04 LMH sing 231 n n 
C04 C02 LMH doub 232 n n 
C02 C01 LMH sing 233 n n 
C02 C03 LMH sing 234 n n 
C01 H1 LMH sing 235 n n 
C01 H2 LMH sing 236 n n 
C01 H3 LMH sing 237 n n 
C03 H5 LMH sing 238 n n 
C03 H6 LMH sing 239 n n 
C03 H7 LMH sing 240 n n 
C04 H8 LMH sing 241 n n 
C05 H10 LMH sing 242 n n 
C05 H11 LMH sing 243 n n 
C06 H12 LMH sing 244 n n 
C06 H13 LMH sing 245 n n 
C08 H14 LMH sing 246 n n 
C08 H15 LMH sing 247 n n 
C08 H16 LMH sing 248 n n 
C09 H17 LMH sing 249 n n 
C10 H18 LMH sing 250 n n 
C10 H19 LMH sing 251 n n 
C11 H20 LMH sing 252 n n 
C11 H21 LMH sing 253 n n 
C13 H22 LMH sing 254 n n 
C13 H23 LMH sing 255 n n 
C13 H24 LMH sing 256 n n 
C14 H25 LMH sing 257 n n 
C15 H26 LMH sing 258 n n 
C15 H27 LMH sing 259 n n 
C16 H28 LMH sing 260 n n 
C16 H29 LMH sing 261 n n 
C18 H31 LMH sing 262 n n 
C18 H32 LMH sing 263 n n 
C18 H33 LMH sing 264 n n 
C19 H34 LMH sing 265 n n 
C20 H36 LMH sing 266 n n 
C20 H37 LMH sing 267 n n 
C21 H38 LMH sing 268 n n 
C21 H39 LMH sing 269 n n 
C22 H40 LMH sing 270 n n 
C23 H41 LMH sing 271 n n 
C23 H42 LMH sing 272 n n 
C23 H43 LMH sing 273 n n 
C24 H44 LMH sing 274 n n 
C24 H45 LMH sing 275 n n 
C25 H46 LMH sing 276 n n 
C25 H47 LMH sing 277 n n 
C31 H48 LMH sing 278 n n 
C33 H49 LMH sing 279 n n 
C34 H50 LMH sing 280 n n 
C34 H51 LMH sing 281 n n 
C36 H52 LMH sing 282 n n 
C38 H53 LMH sing 283 n n 
C40 H54 LMH sing 284 n n 
O29 H55 LMH sing 285 n n 
O35 H56 LMH sing 286 n n 
O37 H57 LMH sing 287 n n 
O39 H58 LMH sing 288 n n 
O41 H59 LMH sing 289 n n 
#
_atom_sites.entry_id                     6SNH 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 LMH X 1 601 601 LMH GPF . 
E 5 HOH X 1 701 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 LMH . . . D 4 124.942 136.531 134.553 1 84.99 ? C01 LMH 601 X 1 
HETATM 2 C C02 LMH . . . D 4 124.382 137.881 134.065 1 84.99 ? C02 LMH 601 X 1 
HETATM 3 C C03 LMH . . . D 4 123.464 138.714 134.985 1 84.99 ? C03 LMH 601 X 1 
HETATM 4 C C04 LMH . . . D 4 124.693 138.332 132.843 1 84.99 ? C04 LMH 601 X 1 
HETATM 5 C C05 LMH . . . D 4 125.626 137.332 132.101 1 84.99 ? C05 LMH 601 X 1 
HETATM 6 C C06 LMH . . . D 4 125.902 137.848 130.659 1 84.99 ? C06 LMH 601 X 1 
HETATM 7 C C07 LMH . . . D 4 126.616 136.731 129.845 1 84.99 ? C07 LMH 601 X 1 
HETATM 8 C C08 LMH . . . D 4 127.063 135.436 130.548 1 84.99 ? C08 LMH 601 X 1 
HETATM 9 C C09 LMH . . . D 4 126.844 136.895 128.525 1 84.99 ? C09 LMH 601 X 1 
HETATM 10 C C10 LMH . . . D 4 127.56 135.771 127.717 1 84.99 ? C10 LMH 601 X 1 
HETATM 11 C C11 LMH . . . D 4 127.553 136.133 126.199 1 84.99 ? C11 LMH 601 X 1 
HETATM 12 C C12 LMH . . . D 4 128.987 136.573 125.768 1 84.99 ? C12 LMH 601 X 1 
HETATM 13 C C13 LMH . . . D 4 129.94 137.213 126.803 1 84.99 ? C13 LMH 601 X 1 
HETATM 14 C C14 LMH . . . D 4 129.395 136.396 124.497 1 84.99 ? C14 LMH 601 X 1 
HETATM 15 C C15 LMH . . . D 4 128.438 135.753 123.455 1 84.99 ? C15 LMH 601 X 1 
HETATM 16 C C16 LMH . . . D 4 129.129 134.508 122.815 1 84.99 ? C16 LMH 601 X 1 
HETATM 17 C C17 LMH . . . D 4 129.463 134.805 121.322 1 84.99 ? C17 LMH 601 X 1 
HETATM 18 C C18 LMH . . . D 4 129.632 136.265 120.842 1 84.99 ? C18 LMH 601 X 1 
HETATM 19 C C19 LMH . . . D 4 129.604 133.788 120.448 1 84.99 ? C19 LMH 601 X 1 
HETATM 20 C C20 LMH . . . D 4 129.389 132.418 121.154 1 84.99 ? C20 LMH 601 X 1 
HETATM 21 C C21 LMH . . . D 4 129.701 131.259 120.159 1 84.99 ? C21 LMH 601 X 1 
HETATM 22 C C22 LMH . . . D 4 129.345 129.885 120.748 1 84.99 ? C22 LMH 601 X 1 
HETATM 23 C C23 LMH . . . D 4 128.807 128.981 119.645 1 84.99 ? C23 LMH 601 X 1 
HETATM 24 C C24 LMH . . . D 4 128.275 130.061 121.831 1 84.99 ? C24 LMH 601 X 1 
HETATM 25 C C25 LMH . . . D 4 128.838 129.831 123.254 1 84.99 ? C25 LMH 601 X 1 
HETATM 26 C C31 LMH . . . D 4 128.107 125.252 123.502 1 84.99 ? C31 LMH 601 X 1 
HETATM 27 C C33 LMH . . . D 4 128.904 124.107 121.473 1 84.99 ? C33 LMH 601 X 1 
HETATM 28 C C34 LMH . . . D 4 128.977 124.226 119.969 1 84.99 ? C34 LMH 601 X 1 
HETATM 29 C C36 LMH . . . D 4 128.038 122.891 121.831 1 84.99 ? C36 LMH 601 X 1 
HETATM 30 C C38 LMH . . . D 4 127.82 122.787 123.304 1 84.99 ? C38 LMH 601 X 1 
HETATM 31 C C40 LMH . . . D 4 127.253 124.033 123.856 1 84.99 ? C40 LMH 601 X 1 
HETATM 32 O O26 LMH . . . D 4 129.131 128.458 123.396 1 84.99 ? O26 LMH 601 X 1 
HETATM 33 O O28 LMH . . . D 4 127.454 128.538 125.367 1 84.99 ? O28 LMH 601 X 1 
HETATM 34 O O29 LMH . . . D 4 129.396 127.023 125.537 1 84.99 ? O29 LMH 601 X 1 
HETATM 35 O O30 LMH . . . D 4 127.466 126.378 123.919 1 84.99 ? O30 LMH 601 X 1 
HETATM 36 O O32 LMH . . . D 4 128.363 125.35 122.027 1 84.99 ? O32 LMH 601 X 1 
HETATM 37 O O35 LMH . . . D 4 129.171 122.935 119.433 1 84.99 ? O35 LMH 601 X 1 
HETATM 38 O O37 LMH . . . D 4 128.688 121.702 121.372 1 84.99 ? O37 LMH 601 X 1 
HETATM 39 O O39 LMH . . . D 4 126.899 121.68 123.568 1 84.99 ? O39 LMH 601 X 1 
HETATM 40 O O41 LMH . . . D 4 127.173 123.917 125.297 1 84.99 ? O41 LMH 601 X 1 
HETATM 41 P P27 LMH . . . D 4 128.364 127.607 124.595 1 84.99 ? P27 LMH 601 X 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           41 
#