data_6SNL
#
_model_server_result.job_id            mRdt8vz1vyAqiRVIY283hg 
_model_server_result.datetime_utc      '2024-10-30 09:16:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6snl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":401}' 
#
_entry.id    6SNL 
#
_exptl.entry_id    6SNL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6SNL 
_cell.length_a            115.113 
_cell.length_b            301.521 
_cell.length_c            140.657 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SNL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,G,H,N,R 1 1 
B,I,J,S 2 1 
E,O,U 2 2 
C,F,K,L,M,P,Q,T,V 3 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_445 -x-1/2,-y-1/2,z+1/2 -1 0 0 0 -1 0 0 0 1 -57.5565 -150.7605 70.3285 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 K N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 179 A LYS 179 1_555 G C4A PLP . A PLP 401 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.429 ? 
covale ? covale2 B NZ LYS 179 B LYS 179 1_555 I C4A PLP . B PLP 401 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.429 ? 
covale ? covale3 C NZ LYS 179 C LYS 179 1_555 K C4A PLP . C PLP 401 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.432 ? 
covale ? covale4 D NZ LYS 179 D LYS 179 1_555 N C4A PLP . D PLP 401 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.431 ? 
covale ? covale5 E NZ LYS 179 E LYS 179 1_555 O C4A PLP . E PLP 401 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.43 ? 
covale ? covale6 F NZ LYS 179 F LYS 179 1_555 P C4A PLP . F PLP 401 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.43 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 317 n y 
N1 C6 PLP sing 318 n y 
C2 C2A PLP sing 319 n n 
C2 C3 PLP sing 320 n y 
C2A H2A1 PLP sing 321 n n 
C2A H2A2 PLP sing 322 n n 
C2A H2A3 PLP sing 323 n n 
C3 O3 PLP sing 324 n n 
C3 C4 PLP doub 325 n y 
O3 HO3 PLP sing 326 n n 
C4 C4A PLP sing 327 n n 
C4 C5 PLP sing 328 n y 
C4A O4A PLP doub 329 n n 
C4A H4A PLP sing 330 n n 
C5 C6 PLP doub 331 n y 
C5 C5A PLP sing 332 n n 
C6 H6 PLP sing 333 n n 
C5A O4P PLP sing 334 n n 
C5A H5A1 PLP sing 335 n n 
C5A H5A2 PLP sing 336 n n 
O4P P PLP sing 337 n n 
P O1P PLP doub 338 n n 
P O2P PLP sing 339 n n 
P O3P PLP sing 340 n n 
O2P HOP2 PLP sing 341 n n 
O3P HOP3 PLP sing 342 n n 
#
_atom_sites.entry_id                     6SNL 
_atom_sites.fract_transf_matrix[1][1]    0.008687 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003317 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007109 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 PLP A 1 401 1180 PLP PLP . 
H 3 GOL A 1 402 2 GOL GOL . 
I 2 PLP B 1 401 1180 PLP PLP . 
J 3 GOL B 1 402 1 GOL GOL . 
K 2 PLP C 1 401 1180 PLP PLP . 
L 4 CL C 1 402 1 CL CL . 
M 5 P6G C 1 403 1 P6G P6G . 
N 2 PLP D 1 401 1180 PLP PLP . 
O 2 PLP E 1 401 1180 PLP PLP . 
P 2 PLP F 1 401 1180 PLP PLP . 
Q 4 CL F 1 402 2 CL CL . 
R 6 HOH A 1 501 11 HOH HOH . 
R 6 HOH A 2 502 9 HOH HOH . 
R 6 HOH A 3 503 19 HOH HOH . 
S 6 HOH B 1 501 17 HOH HOH . 
T 6 HOH C 1 501 1 HOH HOH . 
T 6 HOH C 2 502 2 HOH HOH . 
U 6 HOH E 1 501 18 HOH HOH . 
U 6 HOH E 2 502 4 HOH HOH . 
U 6 HOH E 3 503 8 HOH HOH . 
U 6 HOH E 4 504 16 HOH HOH . 
V 6 HOH F 1 501 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . B . N 2 -16.091 -98.249 -3.673 1 44.16 ? N1 PLP 401 D 1 
HETATM 2 C C2 PLP . B . N 2 -17.11 -97.72 -2.926 1 44.08 ? C2 PLP 401 D 1 
HETATM 3 C C2A PLP . B . N 2 -18.479 -97.975 -3.431 1 43.05 ? C2A PLP 401 D 1 
HETATM 4 C C3 PLP . B . N 2 -16.891 -96.989 -1.768 1 46.21 ? C3 PLP 401 D 1 
HETATM 5 O O3 PLP . B . N 2 -17.963 -96.494 -1.081 1 46.41 ? O3 PLP 401 D 1 
HETATM 6 C C4 PLP . B . N 2 -15.587 -96.76 -1.307 1 46.77 ? C4 PLP 401 D 1 
HETATM 7 C C4A PLP . B . N 2 -15.344 -95.983 -0.082 1 46.77 ? C4A PLP 401 D 1 
HETATM 8 C C5 PLP . B . N 2 -14.545 -97.295 -2.05 1 46.05 ? C5 PLP 401 D 1 
HETATM 9 C C6 PLP . B . N 2 -14.848 -98.031 -3.236 1 45.54 ? C6 PLP 401 D 1 
HETATM 10 C C5A PLP . B . N 2 -13.11 -97.109 -1.666 1 45.75 ? C5A PLP 401 D 1 
HETATM 11 O O4P PLP . B . N 2 -12.771 -95.813 -1.828 1 46.01 ? O4P PLP 401 D 1 
HETATM 12 P P PLP . B . N 2 -11.123 -95.388 -1.125 1 48.51 ? P PLP 401 D 1 
HETATM 13 O O1P PLP . B . N 2 -10.309 -96.269 -2.06 1 47.58 ? O1P PLP 401 D 1 
HETATM 14 O O2P PLP . B . N 2 -11.057 -93.893 -1.336 1 47.12 ? O2P PLP 401 D 1 
HETATM 15 O O3P PLP . B . N 2 -11.319 -95.903 0.267 1 48.31 ? O3P PLP 401 D 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           15 
#