data_6SNL # _model_server_result.job_id cYOlYZQZbJOEotFw9Lqq7g _model_server_result.datetime_utc '2024-11-25 01:45:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6snl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 6SNL # _exptl.entry_id 6SNL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SNL _cell.length_a 115.113 _cell.length_b 301.521 _cell.length_c 140.657 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SNL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G,H,N,R 1 1 B,I,J,S 2 1 E,O,U 2 2 C,F,K,L,M,P,Q,T,V 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_445 -x-1/2,-y-1/2,z+1/2 -1 0 0 0 -1 0 0 0 1 -57.5565 -150.7605 70.3285 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 179 A LYS 179 1_555 G C4A PLP . A PLP 401 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.429 ? covale ? covale2 B NZ LYS 179 B LYS 179 1_555 I C4A PLP . B PLP 401 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.429 ? covale ? covale3 C NZ LYS 179 C LYS 179 1_555 K C4A PLP . C PLP 401 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.432 ? covale ? covale4 D NZ LYS 179 D LYS 179 1_555 N C4A PLP . D PLP 401 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.431 ? covale ? covale5 E NZ LYS 179 E LYS 179 1_555 O C4A PLP . E PLP 401 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.43 ? covale ? covale6 F NZ LYS 179 F LYS 179 1_555 P C4A PLP . F PLP 401 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6SNL _atom_sites.fract_transf_matrix[1][1] 0.008687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003317 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 PLP A 1 401 1180 PLP PLP . H 3 GOL A 1 402 2 GOL GOL . I 2 PLP B 1 401 1180 PLP PLP . J 3 GOL B 1 402 1 GOL GOL . K 2 PLP C 1 401 1180 PLP PLP . L 4 CL C 1 402 1 CL CL . M 5 P6G C 1 403 1 P6G P6G . N 2 PLP D 1 401 1180 PLP PLP . O 2 PLP E 1 401 1180 PLP PLP . P 2 PLP F 1 401 1180 PLP PLP . Q 4 CL F 1 402 2 CL CL . R 6 HOH A 1 501 11 HOH HOH . R 6 HOH A 2 502 9 HOH HOH . R 6 HOH A 3 503 19 HOH HOH . S 6 HOH B 1 501 17 HOH HOH . T 6 HOH C 1 501 1 HOH HOH . T 6 HOH C 2 502 2 HOH HOH . U 6 HOH E 1 501 18 HOH HOH . U 6 HOH E 2 502 4 HOH HOH . U 6 HOH E 3 503 8 HOH HOH . U 6 HOH E 4 504 16 HOH HOH . V 6 HOH F 1 501 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 3 -34.5 -109.217 -8.744 1 43.96 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . H 3 -33.233 -109.466 -8.222 1 41.95 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . H 3 -35.5 -109.358 -7.574 1 42.74 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . H 3 -35.505 -108.236 -6.76 1 41.52 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . H 3 -36.872 -109.605 -8.245 1 42.97 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . H 3 -36.697 -110.649 -9.155 1 42.45 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #