data_6SNO # _model_server_result.job_id BSzLew3j82yyG3WmmElfMA _model_server_result.datetime_utc '2024-12-26 23:58:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sno # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6SNO # _exptl.entry_id 6SNO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 1-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.44 _cell.angle_gamma 90 _cell.entry_id 6SNO _cell.length_a 72.954 _cell.length_b 53.351 _cell.length_c 76.321 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SNO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 137 A ALA 134 1_555 A N SEP 138 A SEP 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C SEP 138 A SEP 135 1_555 A N HIS 139 A HIS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A OG SEP 138 A SEP 135 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc2 A O2P SEP 138 A SEP 135 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc3 A OD2 ASP 309 A ASP 306 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc4 A OD1 ASP 311 A ASP 308 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc5 A OD1 ASP 313 A ASP 310 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id G1P _chem_comp.mon_nstd_flag n _chem_comp.name 1-O-phosphono-alpha-D-glucopyranose _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ALPHA-D-GLUCOSE-1-PHOSPHATE;1-O-phosphono-alpha-D-glucose;1-O-phosphono-D-glucose;1-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 G1P sing 83 n n C1 O1 G1P sing 84 n n C1 O5 G1P sing 85 n n C1 H1 G1P sing 86 n n C2 C3 G1P sing 87 n n C2 O2 G1P sing 88 n n C2 H2 G1P sing 89 n n C3 C4 G1P sing 90 n n C3 O3 G1P sing 91 n n C3 H3 G1P sing 92 n n C4 C5 G1P sing 93 n n C4 O4 G1P sing 94 n n C4 H4 G1P sing 95 n n C5 C6 G1P sing 96 n n C5 O5 G1P sing 97 n n C5 H5 G1P sing 98 n n C6 O6 G1P sing 99 n n C6 H61 G1P sing 100 n n C6 H62 G1P sing 101 n n O1 P G1P sing 102 n n O2 HO2 G1P sing 103 n n O3 HO3 G1P sing 104 n n O4 HO4 G1P sing 105 n n O6 HO6 G1P sing 106 n n P O1P G1P doub 107 n n P O2P G1P sing 108 n n P O3P G1P sing 109 n n O2P HOP2 G1P sing 110 n n O3P HOP3 G1P sing 111 n n # _pdbx_chem_comp_identifier.comp_id G1P _pdbx_chem_comp_identifier.identifier a-D-Glcp1PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 6SNO _atom_sites.fract_transf_matrix[1][1] 0.013707 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002034 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 601 1 ZN ZN . C 3 G1P A 1 602 1 G1P LIG . D 4 HOH A 1 701 20 HOH HOH . D 4 HOH A 2 702 45 HOH HOH . D 4 HOH A 3 703 33 HOH HOH . D 4 HOH A 4 704 35 HOH HOH . D 4 HOH A 5 705 40 HOH HOH . D 4 HOH A 6 706 43 HOH HOH . D 4 HOH A 7 707 18 HOH HOH . D 4 HOH A 8 708 26 HOH HOH . D 4 HOH A 9 709 7 HOH HOH . D 4 HOH A 10 710 21 HOH HOH . D 4 HOH A 11 711 28 HOH HOH . D 4 HOH A 12 712 2 HOH HOH . D 4 HOH A 13 713 37 HOH HOH . D 4 HOH A 14 714 22 HOH HOH . D 4 HOH A 15 715 46 HOH HOH . D 4 HOH A 16 716 23 HOH HOH . D 4 HOH A 17 717 15 HOH HOH . D 4 HOH A 18 718 4 HOH HOH . D 4 HOH A 19 719 25 HOH HOH . D 4 HOH A 20 720 36 HOH HOH . D 4 HOH A 21 721 13 HOH HOH . D 4 HOH A 22 722 16 HOH HOH . D 4 HOH A 23 723 9 HOH HOH . D 4 HOH A 24 724 27 HOH HOH . D 4 HOH A 25 725 11 HOH HOH . D 4 HOH A 26 726 24 HOH HOH . D 4 HOH A 27 727 6 HOH HOH . D 4 HOH A 28 728 41 HOH HOH . D 4 HOH A 29 729 12 HOH HOH . D 4 HOH A 30 730 14 HOH HOH . D 4 HOH A 31 731 10 HOH HOH . D 4 HOH A 32 732 32 HOH HOH . D 4 HOH A 33 733 17 HOH HOH . D 4 HOH A 34 734 3 HOH HOH . D 4 HOH A 35 735 8 HOH HOH . D 4 HOH A 36 736 49 HOH HOH . D 4 HOH A 37 737 31 HOH HOH . D 4 HOH A 38 738 5 HOH HOH . D 4 HOH A 39 739 30 HOH HOH . D 4 HOH A 40 740 44 HOH HOH . D 4 HOH A 41 741 29 HOH HOH . D 4 HOH A 42 742 38 HOH HOH . D 4 HOH A 43 743 48 HOH HOH . D 4 HOH A 44 744 47 HOH HOH . D 4 HOH A 45 745 1 HOH HOH . D 4 HOH A 46 746 19 HOH HOH . D 4 HOH A 47 747 34 HOH HOH . D 4 HOH A 48 748 42 HOH HOH . D 4 HOH A 49 749 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G1P . . . C 3 -15.19 -3.262 -25.056 1 59.17 ? C1 G1P 602 A 1 HETATM 2 C C2 G1P . . . C 3 -14.797 -4.686 -25.448 1 55.81 ? C2 G1P 602 A 1 HETATM 3 C C3 G1P . . . C 3 -15.873 -5.652 -25.151 1 60.04 ? C3 G1P 602 A 1 HETATM 4 C C4 G1P . . . C 3 -16.334 -5.577 -23.732 1 58.08 ? C4 G1P 602 A 1 HETATM 5 C C5 G1P . . . C 3 -16.682 -4.14 -23.326 1 57.82 ? C5 G1P 602 A 1 HETATM 6 C C6 G1P . . . C 3 -17.006 -4.105 -21.86 1 59.02 ? C6 G1P 602 A 1 HETATM 7 O O1 G1P . . . C 3 -16.267 -2.859 -25.795 1 62.94 ? O1 G1P 602 A 1 HETATM 8 O O2 G1P . . . C 3 -14.507 -4.734 -26.86 1 50.48 ? O2 G1P 602 A 1 HETATM 9 O O3 G1P . . . C 3 -15.387 -7.002 -25.426 1 63.2 ? O3 G1P 602 A 1 HETATM 10 O O4 G1P . . . C 3 -17.489 -6.405 -23.575 1 56.31 ? O4 G1P 602 A 1 HETATM 11 O O5 G1P . . . C 3 -15.58 -3.213 -23.611 1 63.29 ? O5 G1P 602 A 1 HETATM 12 O O6 G1P . . . C 3 -15.937 -4.679 -21.152 1 62.37 ? O6 G1P 602 A 1 HETATM 13 P P G1P . . . C 3 -16.099 -2.032 -27.222 1 53.12 ? P G1P 602 A 1 HETATM 14 O O1P G1P . . . C 3 -15.309 -2.857 -28.213 1 57.71 ? O1P G1P 602 A 1 HETATM 15 O O2P G1P . . . C 3 -17.475 -1.742 -27.777 1 55.31 ? O2P G1P 602 A 1 HETATM 16 O O3P G1P . . . C 3 -15.381 -0.726 -26.988 1 55.92 ? O3P G1P 602 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #