data_6SNQ # _model_server_result.job_id Smpj5VMdjj9h7rDRkAi6JQ _model_server_result.datetime_utc '2024-12-26 15:13:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6snq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6SNQ # _exptl.entry_id 6SNQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.14 _cell.angle_gamma 90 _cell.entry_id 6SNQ _cell.length_a 73.262 _cell.length_b 53.155 _cell.length_c 76.825 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SNQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 137 A ALA 134 1_555 A N SEP 138 A SEP 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C SEP 138 A SEP 135 1_555 A N HIS 139 A HIS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OG SEP 138 A SEP 135 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc2 A O2P SEP 138 A SEP 135 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc3 A OD2 ASP 309 A ASP 306 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc4 A OD1 ASP 311 A ASP 308 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc5 A OD1 ASP 313 A ASP 310 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id G6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms ALPHA-D-GLUCOSE-6-PHOSPHATE;6-O-phosphono-alpha-D-glucose;6-O-phosphono-D-glucose;6-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 G6P sing 83 n n C1 O1 G6P sing 84 n n C1 O5 G6P sing 85 n n C1 H1 G6P sing 86 n n C2 C3 G6P sing 87 n n C2 O2 G6P sing 88 n n C2 H2 G6P sing 89 n n C3 C4 G6P sing 90 n n C3 O3 G6P sing 91 n n C3 H3 G6P sing 92 n n C4 C5 G6P sing 93 n n C4 O4 G6P sing 94 n n C4 H4 G6P sing 95 n n C5 C6 G6P sing 96 n n C5 O5 G6P sing 97 n n C5 H5 G6P sing 98 n n C6 O6 G6P sing 99 n n C6 H61 G6P sing 100 n n C6 H62 G6P sing 101 n n O1 HO1 G6P sing 102 n n O2 HO2 G6P sing 103 n n O3 HO3 G6P sing 104 n n O4 HO4 G6P sing 105 n n O6 P G6P sing 106 n n P O1P G6P sing 107 n n P O2P G6P sing 108 n n P O3P G6P doub 109 n n O1P HO1P G6P sing 110 n n O2P HO2P G6P sing 111 n n # _pdbx_chem_comp_identifier.comp_id G6P _pdbx_chem_comp_identifier.identifier a-D-Glcp6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 6SNQ _atom_sites.fract_transf_matrix[1][1] 0.01365 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002196 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018813 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 601 1 ZN ZN . C 3 G6P A 1 602 1 G6P LIG . D 4 HOH A 1 701 61 HOH HOH . D 4 HOH A 2 702 69 HOH HOH . D 4 HOH A 3 703 65 HOH HOH . D 4 HOH A 4 704 62 HOH HOH . D 4 HOH A 5 705 59 HOH HOH . D 4 HOH A 6 706 4 HOH HOH . D 4 HOH A 7 707 36 HOH HOH . D 4 HOH A 8 708 35 HOH HOH . D 4 HOH A 9 709 28 HOH HOH . D 4 HOH A 10 710 33 HOH HOH . D 4 HOH A 11 711 51 HOH HOH . D 4 HOH A 12 712 23 HOH HOH . D 4 HOH A 13 713 73 HOH HOH . D 4 HOH A 14 714 10 HOH HOH . D 4 HOH A 15 715 58 HOH HOH . D 4 HOH A 16 716 13 HOH HOH . D 4 HOH A 17 717 77 HOH HOH . D 4 HOH A 18 718 17 HOH HOH . D 4 HOH A 19 719 2 HOH HOH . D 4 HOH A 20 720 12 HOH HOH . D 4 HOH A 21 721 60 HOH HOH . D 4 HOH A 22 722 32 HOH HOH . D 4 HOH A 23 723 31 HOH HOH . D 4 HOH A 24 724 37 HOH HOH . D 4 HOH A 25 725 18 HOH HOH . D 4 HOH A 26 726 84 HOH HOH . D 4 HOH A 27 727 40 HOH HOH . D 4 HOH A 28 728 8 HOH HOH . D 4 HOH A 29 729 63 HOH HOH . D 4 HOH A 30 730 27 HOH HOH . D 4 HOH A 31 731 22 HOH HOH . D 4 HOH A 32 732 26 HOH HOH . D 4 HOH A 33 733 9 HOH HOH . D 4 HOH A 34 734 16 HOH HOH . D 4 HOH A 35 735 47 HOH HOH . D 4 HOH A 36 736 34 HOH HOH . D 4 HOH A 37 737 76 HOH HOH . D 4 HOH A 38 738 6 HOH HOH . D 4 HOH A 39 739 24 HOH HOH . D 4 HOH A 40 740 52 HOH HOH . D 4 HOH A 41 741 15 HOH HOH . D 4 HOH A 42 742 1 HOH HOH . D 4 HOH A 43 743 25 HOH HOH . D 4 HOH A 44 744 3 HOH HOH . D 4 HOH A 45 745 5 HOH HOH . D 4 HOH A 46 746 72 HOH HOH . D 4 HOH A 47 747 56 HOH HOH . D 4 HOH A 48 748 45 HOH HOH . D 4 HOH A 49 749 7 HOH HOH . D 4 HOH A 50 750 20 HOH HOH . D 4 HOH A 51 751 64 HOH HOH . D 4 HOH A 52 752 55 HOH HOH . D 4 HOH A 53 753 29 HOH HOH . D 4 HOH A 54 754 30 HOH HOH . D 4 HOH A 55 755 74 HOH HOH . D 4 HOH A 56 756 80 HOH HOH . D 4 HOH A 57 757 79 HOH HOH . D 4 HOH A 58 758 21 HOH HOH . D 4 HOH A 59 759 75 HOH HOH . D 4 HOH A 60 760 41 HOH HOH . D 4 HOH A 61 761 50 HOH HOH . D 4 HOH A 62 762 42 HOH HOH . D 4 HOH A 63 763 43 HOH HOH . D 4 HOH A 64 764 78 HOH HOH . D 4 HOH A 65 765 71 HOH HOH . D 4 HOH A 66 766 19 HOH HOH . D 4 HOH A 67 767 57 HOH HOH . D 4 HOH A 68 768 82 HOH HOH . D 4 HOH A 69 769 38 HOH HOH . D 4 HOH A 70 770 54 HOH HOH . D 4 HOH A 71 771 14 HOH HOH . D 4 HOH A 72 772 44 HOH HOH . D 4 HOH A 73 773 81 HOH HOH . D 4 HOH A 74 774 83 HOH HOH . D 4 HOH A 75 775 46 HOH HOH . D 4 HOH A 76 776 67 HOH HOH . D 4 HOH A 77 777 66 HOH HOH . D 4 HOH A 78 778 11 HOH HOH . D 4 HOH A 79 779 39 HOH HOH . D 4 HOH A 80 780 48 HOH HOH . D 4 HOH A 81 781 70 HOH HOH . D 4 HOH A 82 782 68 HOH HOH . D 4 HOH A 83 783 53 HOH HOH . D 4 HOH A 84 784 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G6P . . . C 3 -16.932 -4.397 -22.208 1 65.22 ? C1 G6P 602 A 1 HETATM 2 C C2 G6P . . . C 3 -17.729 -5.668 -22.496 1 66.68 ? C2 G6P 602 A 1 HETATM 3 C C3 G6P . . . C 3 -17.059 -6.584 -23.442 1 65.03 ? C3 G6P 602 A 1 HETATM 4 C C4 G6P . . . C 3 -16.488 -5.895 -24.64 1 65 ? C4 G6P 602 A 1 HETATM 5 C C5 G6P . . . C 3 -15.669 -4.648 -24.283 1 65.56 ? C5 G6P 602 A 1 HETATM 6 C C6 G6P . . . C 3 -15.225 -3.943 -25.544 1 64.61 ? C6 G6P 602 A 1 HETATM 7 O O1 G6P . . . C 3 -15.858 -4.723 -21.433 1 57.39 ? O1 G6P 602 A 1 HETATM 8 O O2 G6P . . . C 3 -17.948 -6.352 -21.238 1 72.48 ? O2 G6P 602 A 1 HETATM 9 O O3 G6P . . . C 3 -18.061 -7.543 -23.909 1 58.79 ? O3 G6P 602 A 1 HETATM 10 O O4 G6P . . . C 3 -15.669 -6.815 -25.381 1 61.24 ? O4 G6P 602 A 1 HETATM 11 O O5 G6P . . . C 3 -16.45 -3.728 -23.452 1 66.9 ? O5 G6P 602 A 1 HETATM 12 O O6 G6P . . . C 3 -16.317 -3.262 -26.13 1 71.73 ? O6 G6P 602 A 1 HETATM 13 P P G6P . . . C 3 -15.997 -2.033 -27.198 1 67.1 ? P G6P 602 A 1 HETATM 14 O O1P G6P . . . C 3 -17.268 -1.586 -27.89 1 61.08 ? O1P G6P 602 A 1 HETATM 15 O O2P G6P . . . C 3 -15.403 -0.866 -26.452 1 65.21 -1 O2P G6P 602 A 1 HETATM 16 O O3P G6P . . . C 3 -15.009 -2.514 -28.238 1 62.01 -1 O3P G6P 602 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #