data_6SOK # _model_server_result.job_id -i-F2qszXrN4q4nzFTNuRQ _model_server_result.datetime_utc '2024-10-18 16:31:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sok # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":101}' # _entry.id 6SOK # _exptl.entry_id 6SOK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 16.023 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMINO GROUP' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SOK _cell.length_a 101.34 _cell.length_b 101.34 _cell.length_c 118.34 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SOK _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C LYS 11 P LYS 10 1_555 I N NH2 . P NH2 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 F C LYS 11 Q LYS 10 1_555 J N NH2 . Q NH2 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 G C LYS 11 R LYS 10 1_555 K N NH2 . R NH2 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale4 H C LYS 11 S LYS 10 1_555 L N NH2 . S NH2 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'H2 N' _chem_comp.formula_weight 16.023 _chem_comp.id NH2 _chem_comp.mon_nstd_flag . _chem_comp.name 'AMINO GROUP' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N HN1 NH2 sing 241 n n N HN2 NH2 sing 242 n n # _atom_sites.entry_id 6SOK _atom_sites.fract_transf_matrix[1][1] 0.009868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 NH2 P 1 101 11 NH2 NH2 . J 3 NH2 Q 1 101 11 NH2 NH2 . K 3 NH2 R 1 101 11 NH2 NH2 . L 3 NH2 S 1 101 11 NH2 NH2 . M 4 HOH A 1 201 230 HOH HOH . M 4 HOH A 2 202 225 HOH HOH . M 4 HOH A 3 203 40 HOH HOH . M 4 HOH A 4 204 120 HOH HOH . M 4 HOH A 5 205 39 HOH HOH . M 4 HOH A 6 206 85 HOH HOH . M 4 HOH A 7 207 6 HOH HOH . M 4 HOH A 8 208 97 HOH HOH . M 4 HOH A 9 209 183 HOH HOH . M 4 HOH A 10 210 43 HOH HOH . M 4 HOH A 11 211 3 HOH HOH . M 4 HOH A 12 212 216 HOH HOH . M 4 HOH A 13 213 104 HOH HOH . M 4 HOH A 14 214 70 HOH HOH . M 4 HOH A 15 215 112 HOH HOH . M 4 HOH A 16 216 28 HOH HOH . M 4 HOH A 17 217 49 HOH HOH . M 4 HOH A 18 218 48 HOH HOH . M 4 HOH A 19 219 51 HOH HOH . M 4 HOH A 20 220 90 HOH HOH . M 4 HOH A 21 221 196 HOH HOH . M 4 HOH A 22 222 195 HOH HOH . M 4 HOH A 23 223 29 HOH HOH . M 4 HOH A 24 224 164 HOH HOH . M 4 HOH A 25 225 30 HOH HOH . M 4 HOH A 26 226 79 HOH HOH . M 4 HOH A 27 227 33 HOH HOH . M 4 HOH A 28 228 168 HOH HOH . M 4 HOH A 29 229 136 HOH HOH . M 4 HOH A 30 230 127 HOH HOH . M 4 HOH A 31 231 142 HOH HOH . M 4 HOH A 32 232 91 HOH HOH . M 4 HOH A 33 233 223 HOH HOH . M 4 HOH A 34 234 150 HOH HOH . M 4 HOH A 35 235 110 HOH HOH . M 4 HOH A 36 236 23 HOH HOH . M 4 HOH A 37 237 234 HOH HOH . M 4 HOH A 38 238 9 HOH HOH . M 4 HOH A 39 239 65 HOH HOH . M 4 HOH A 40 240 156 HOH HOH . M 4 HOH A 41 241 32 HOH HOH . M 4 HOH A 42 242 100 HOH HOH . M 4 HOH A 43 243 169 HOH HOH . M 4 HOH A 44 244 36 HOH HOH . M 4 HOH A 45 245 129 HOH HOH . M 4 HOH A 46 246 194 HOH HOH . M 4 HOH A 47 247 130 HOH HOH . M 4 HOH A 48 248 124 HOH HOH . M 4 HOH A 49 249 121 HOH HOH . M 4 HOH A 50 250 76 HOH HOH . M 4 HOH A 51 251 166 HOH HOH . M 4 HOH A 52 252 155 HOH HOH . M 4 HOH A 53 253 231 HOH HOH . M 4 HOH A 54 254 117 HOH HOH . M 4 HOH A 55 255 75 HOH HOH . M 4 HOH A 56 256 191 HOH HOH . M 4 HOH A 57 257 55 HOH HOH . M 4 HOH A 58 258 224 HOH HOH . M 4 HOH A 59 259 148 HOH HOH . M 4 HOH A 60 260 163 HOH HOH . M 4 HOH A 61 261 221 HOH HOH . N 4 HOH B 1 201 140 HOH HOH . N 4 HOH B 2 202 5 HOH HOH . N 4 HOH B 3 203 86 HOH HOH . N 4 HOH B 4 204 93 HOH HOH . N 4 HOH B 5 205 27 HOH HOH . N 4 HOH B 6 206 174 HOH HOH . N 4 HOH B 7 207 146 HOH HOH . N 4 HOH B 8 208 106 HOH HOH . N 4 HOH B 9 209 15 HOH HOH . N 4 HOH B 10 210 31 HOH HOH . N 4 HOH B 11 211 103 HOH HOH . N 4 HOH B 12 212 73 HOH HOH . N 4 HOH B 13 213 162 HOH HOH . N 4 HOH B 14 214 145 HOH HOH . N 4 HOH B 15 215 98 HOH HOH . N 4 HOH B 16 216 197 HOH HOH . N 4 HOH B 17 217 125 HOH HOH . N 4 HOH B 18 218 105 HOH HOH . N 4 HOH B 19 219 78 HOH HOH . N 4 HOH B 20 220 203 HOH HOH . N 4 HOH B 21 221 214 HOH HOH . N 4 HOH B 22 222 126 HOH HOH . N 4 HOH B 23 223 204 HOH HOH . N 4 HOH B 24 224 77 HOH HOH . N 4 HOH B 25 225 21 HOH HOH . N 4 HOH B 26 226 34 HOH HOH . N 4 HOH B 27 227 158 HOH HOH . N 4 HOH B 28 228 143 HOH HOH . N 4 HOH B 29 229 68 HOH HOH . N 4 HOH B 30 230 113 HOH HOH . N 4 HOH B 31 231 149 HOH HOH . N 4 HOH B 32 232 89 HOH HOH . N 4 HOH B 33 233 11 HOH HOH . N 4 HOH B 34 234 25 HOH HOH . N 4 HOH B 35 235 114 HOH HOH . N 4 HOH B 36 236 67 HOH HOH . N 4 HOH B 37 237 200 HOH HOH . N 4 HOH B 38 238 116 HOH HOH . N 4 HOH B 39 239 122 HOH HOH . N 4 HOH B 40 240 57 HOH HOH . N 4 HOH B 41 241 193 HOH HOH . N 4 HOH B 42 242 132 HOH HOH . N 4 HOH B 43 243 157 HOH HOH . N 4 HOH B 44 244 222 HOH HOH . N 4 HOH B 45 245 88 HOH HOH . N 4 HOH B 46 246 159 HOH HOH . N 4 HOH B 47 247 198 HOH HOH . N 4 HOH B 48 248 178 HOH HOH . N 4 HOH B 49 249 202 HOH HOH . N 4 HOH B 50 250 220 HOH HOH . N 4 HOH B 51 251 192 HOH HOH . N 4 HOH B 52 252 187 HOH HOH . O 4 HOH C 1 201 96 HOH HOH . O 4 HOH C 2 202 181 HOH HOH . O 4 HOH C 3 203 185 HOH HOH . O 4 HOH C 4 204 133 HOH HOH . O 4 HOH C 5 205 8 HOH HOH . O 4 HOH C 6 206 190 HOH HOH . O 4 HOH C 7 207 141 HOH HOH . O 4 HOH C 8 208 139 HOH HOH . O 4 HOH C 9 209 81 HOH HOH . O 4 HOH C 10 210 175 HOH HOH . O 4 HOH C 11 211 131 HOH HOH . O 4 HOH C 12 212 182 HOH HOH . O 4 HOH C 13 213 207 HOH HOH . O 4 HOH C 14 214 16 HOH HOH . O 4 HOH C 15 215 12 HOH HOH . O 4 HOH C 16 216 208 HOH HOH . O 4 HOH C 17 217 59 HOH HOH . O 4 HOH C 18 218 1 HOH HOH . O 4 HOH C 19 219 83 HOH HOH . O 4 HOH C 20 220 236 HOH HOH . O 4 HOH C 21 221 18 HOH HOH . O 4 HOH C 22 222 82 HOH HOH . O 4 HOH C 23 223 2 HOH HOH . O 4 HOH C 24 224 64 HOH HOH . O 4 HOH C 25 225 54 HOH HOH . O 4 HOH C 26 226 60 HOH HOH . O 4 HOH C 27 227 47 HOH HOH . O 4 HOH C 28 228 135 HOH HOH . O 4 HOH C 29 229 69 HOH HOH . O 4 HOH C 30 230 56 HOH HOH . O 4 HOH C 31 231 53 HOH HOH . O 4 HOH C 32 232 71 HOH HOH . O 4 HOH C 33 233 137 HOH HOH . O 4 HOH C 34 234 13 HOH HOH . O 4 HOH C 35 235 20 HOH HOH . O 4 HOH C 36 236 66 HOH HOH . O 4 HOH C 37 237 87 HOH HOH . O 4 HOH C 38 238 35 HOH HOH . O 4 HOH C 39 239 19 HOH HOH . O 4 HOH C 40 240 74 HOH HOH . O 4 HOH C 41 241 176 HOH HOH . O 4 HOH C 42 242 154 HOH HOH . O 4 HOH C 43 243 205 HOH HOH . O 4 HOH C 44 244 45 HOH HOH . O 4 HOH C 45 245 161 HOH HOH . O 4 HOH C 46 246 24 HOH HOH . O 4 HOH C 47 247 95 HOH HOH . O 4 HOH C 48 248 233 HOH HOH . O 4 HOH C 49 249 209 HOH HOH . O 4 HOH C 50 250 184 HOH HOH . O 4 HOH C 51 251 118 HOH HOH . O 4 HOH C 52 252 206 HOH HOH . O 4 HOH C 53 253 107 HOH HOH . O 4 HOH C 54 254 123 HOH HOH . O 4 HOH C 55 255 80 HOH HOH . O 4 HOH C 56 256 14 HOH HOH . O 4 HOH C 57 257 229 HOH HOH . O 4 HOH C 58 258 186 HOH HOH . O 4 HOH C 59 259 180 HOH HOH . O 4 HOH C 60 260 160 HOH HOH . O 4 HOH C 61 261 235 HOH HOH . O 4 HOH C 62 262 152 HOH HOH . O 4 HOH C 63 263 173 HOH HOH . O 4 HOH C 64 264 151 HOH HOH . O 4 HOH C 65 265 218 HOH HOH . P 4 HOH D 1 201 237 HOH HOH . P 4 HOH D 2 202 50 HOH HOH . P 4 HOH D 3 203 228 HOH HOH . P 4 HOH D 4 204 242 HOH HOH . P 4 HOH D 5 205 38 HOH HOH . P 4 HOH D 6 206 128 HOH HOH . P 4 HOH D 7 207 189 HOH HOH . P 4 HOH D 8 208 226 HOH HOH . P 4 HOH D 9 209 201 HOH HOH . P 4 HOH D 10 210 61 HOH HOH . P 4 HOH D 11 211 102 HOH HOH . P 4 HOH D 12 212 10 HOH HOH . P 4 HOH D 13 213 52 HOH HOH . P 4 HOH D 14 214 210 HOH HOH . P 4 HOH D 15 215 199 HOH HOH . P 4 HOH D 16 216 101 HOH HOH . P 4 HOH D 17 217 22 HOH HOH . P 4 HOH D 18 218 7 HOH HOH . P 4 HOH D 19 219 63 HOH HOH . P 4 HOH D 20 220 119 HOH HOH . P 4 HOH D 21 221 172 HOH HOH . P 4 HOH D 22 222 42 HOH HOH . P 4 HOH D 23 223 153 HOH HOH . P 4 HOH D 24 224 72 HOH HOH . P 4 HOH D 25 225 46 HOH HOH . P 4 HOH D 26 226 58 HOH HOH . P 4 HOH D 27 227 219 HOH HOH . P 4 HOH D 28 228 44 HOH HOH . P 4 HOH D 29 229 211 HOH HOH . P 4 HOH D 30 230 37 HOH HOH . P 4 HOH D 31 231 115 HOH HOH . P 4 HOH D 32 232 147 HOH HOH . P 4 HOH D 33 233 92 HOH HOH . P 4 HOH D 34 234 4 HOH HOH . P 4 HOH D 35 235 212 HOH HOH . P 4 HOH D 36 236 62 HOH HOH . P 4 HOH D 37 237 108 HOH HOH . P 4 HOH D 38 238 17 HOH HOH . P 4 HOH D 39 239 94 HOH HOH . P 4 HOH D 40 240 238 HOH HOH . P 4 HOH D 41 241 171 HOH HOH . P 4 HOH D 42 242 165 HOH HOH . P 4 HOH D 43 243 217 HOH HOH . P 4 HOH D 44 244 170 HOH HOH . P 4 HOH D 45 245 227 HOH HOH . P 4 HOH D 46 246 41 HOH HOH . P 4 HOH D 47 247 240 HOH HOH . P 4 HOH D 48 248 144 HOH HOH . P 4 HOH D 49 249 232 HOH HOH . P 4 HOH D 50 250 84 HOH HOH . P 4 HOH D 51 251 215 HOH HOH . P 4 HOH D 52 252 177 HOH HOH . P 4 HOH D 53 253 109 HOH HOH . P 4 HOH D 54 254 26 HOH HOH . P 4 HOH D 55 255 213 HOH HOH . P 4 HOH D 56 256 241 HOH HOH . P 4 HOH D 57 257 188 HOH HOH . P 4 HOH D 58 258 179 HOH HOH . P 4 HOH D 59 259 239 HOH HOH . P 4 HOH D 60 260 167 HOH HOH . P 4 HOH D 61 261 134 HOH HOH . Q 4 HOH P 1 201 111 HOH HOH . R 4 HOH R 1 201 99 HOH HOH . S 4 HOH S 1 201 138 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol N _atom_site.label_atom_id N _atom_site.label_comp_id NH2 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 3 _atom_site.Cartn_x 7.289 _atom_site.Cartn_y 79.204 _atom_site.Cartn_z -22.029 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 80.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id N _atom_site.auth_comp_id NH2 _atom_site.auth_seq_id 101 _atom_site.auth_asym_id S _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #