data_6SOY # _model_server_result.job_id oKB-gA7p0wQZZZRhmC1TAA _model_server_result.datetime_utc '2024-12-25 06:36:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6soy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 6SOY # _exptl.entry_id 6SOY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 128.74 _cell.angle_gamma 90 _cell.entry_id 6SOY _cell.length_a 163.49 _cell.length_b 108.11 _cell.length_c 115 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SOY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 A CYS 34 1_555 A SG CYS 161 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 A SG CYS 84 A CYS 84 1_555 A SG CYS 312 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 144 A CYS 144 1_555 A SG CYS 215 A CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 34 B CYS 34 1_555 B SG CYS 161 B CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf5 B SG CYS 84 B CYS 84 1_555 B SG CYS 311 B CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 215 B CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf7 B SG CYS 230 B CYS 230 1_555 B SG CYS 247 B CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf8 C SG CYS 7 C CYS 9 1_555 C SG CYS 46 C CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf9 C SG CYS 17 C CYS 19 1_555 C SG CYS 37 C CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf10 C SG CYS 116 C CYS 118 1_555 C SG CYS 192 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf11 C SG CYS 135 C CYS 137 1_555 C SG CYS 329 C CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf12 C SG CYS 156 C CYS 158 1_555 C SG CYS 172 C CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf13 C SG CYS 159 C CYS 161 1_555 C SG CYS 177 C CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 C SG CYS 169 C CYS 171 1_555 C SG CYS 175 C CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf15 C SG CYS 225 C CYS 227 1_555 C SG CYS 239 C CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf16 C SG CYS 343 C CYS 345 1_555 C SG CYS 375 C CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf17 C SG CYS 353 C CYS 355 1_555 C SG CYS 366 C CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf18 C SG CYS 400 C CYS 402 1_555 C SG CYS 672 C CYS 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf19 C SG CYS 416 C CYS 418 1_555 C SG CYS 635 C CYS 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf20 C SG CYS 448 C CYS 450 1_555 C SG CYS 521 C CYS 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf21 C SG CYS 472 C CYS 474 1_555 C SG CYS 663 C CYS 665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf22 C SG CYS 482 C CYS 484 1_555 C SG CYS 496 C CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf23 C SG CYS 493 C CYS 495 1_555 C SG CYS 504 C CYS 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf24 C SG CYS 561 C CYS 563 1_555 C SG CYS 575 C CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 C ND2 ASN 411 C ASN 413 1_555 E C1 NAG . C NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? metalc ? metalc1 C OD1 ASP 390 C ASP 392 1_555 D FE FE . C FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc2 C OH TYR 424 C TYR 426 1_555 D FE FE . C FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc3 C OH TYR 515 C TYR 517 1_555 D FE FE . C FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc4 C NE2 HIS 583 C HIS 585 1_555 D FE FE . C FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6SOY _atom_sites.fract_transf_matrix[1][1] 0.006117 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004907 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00925 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011148 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FE C 1 701 1 FE FE . E 5 NAG C 1 702 1 NAG NAG . F 6 HOH A 1 401 12 HOH HOH . F 6 HOH A 2 402 25 HOH HOH . F 6 HOH A 3 403 23 HOH HOH . F 6 HOH A 4 404 21 HOH HOH . F 6 HOH A 5 405 17 HOH HOH . F 6 HOH A 6 406 26 HOH HOH . F 6 HOH A 7 407 16 HOH HOH . F 6 HOH A 8 408 19 HOH HOH . F 6 HOH A 9 409 22 HOH HOH . F 6 HOH A 10 410 29 HOH HOH . F 6 HOH A 11 411 18 HOH HOH . F 6 HOH A 12 412 24 HOH HOH . F 6 HOH A 13 413 27 HOH HOH . G 6 HOH B 1 401 28 HOH HOH . G 6 HOH B 2 402 5 HOH HOH . G 6 HOH B 3 403 4 HOH HOH . G 6 HOH B 4 404 3 HOH HOH . G 6 HOH B 5 405 20 HOH HOH . G 6 HOH B 6 406 30 HOH HOH . H 6 HOH C 1 801 34 HOH HOH . H 6 HOH C 2 802 2 HOH HOH . H 6 HOH C 3 803 38 HOH HOH . H 6 HOH C 4 804 11 HOH HOH . H 6 HOH C 5 805 14 HOH HOH . H 6 HOH C 6 806 8 HOH HOH . H 6 HOH C 7 807 35 HOH HOH . H 6 HOH C 8 808 36 HOH HOH . H 6 HOH C 9 809 13 HOH HOH . H 6 HOH C 10 810 33 HOH HOH . H 6 HOH C 11 811 31 HOH HOH . H 6 HOH C 12 812 7 HOH HOH . H 6 HOH C 13 813 1 HOH HOH . H 6 HOH C 14 814 32 HOH HOH . H 6 HOH C 15 815 37 HOH HOH . H 6 HOH C 16 816 6 HOH HOH . H 6 HOH C 17 817 9 HOH HOH . H 6 HOH C 18 818 10 HOH HOH . H 6 HOH C 19 819 15 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 94.823 _atom_site.Cartn_y 95.37 _atom_site.Cartn_z -72.631 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 77.69 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 701 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #