data_6SOY
#
_model_server_result.job_id            8LY7blohAfIMuFQ0ARvHrw 
_model_server_result.datetime_utc      '2024-12-25 07:05:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6soy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":702}' 
#
_entry.id    6SOY 
#
_exptl.entry_id    6SOY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          128.74 
_cell.angle_gamma         90 
_cell.entry_id            6SOY 
_cell.length_a            163.49 
_cell.length_b            108.11 
_cell.length_c            115 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SOY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 34 A CYS 34 1_555 A SG CYS 161 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf2 A SG CYS 84 A CYS 84 1_555 A SG CYS 312 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf3 A SG CYS 144 A CYS 144 1_555 A SG CYS 215 A CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 B SG CYS 34 B CYS 34 1_555 B SG CYS 161 B CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf5 B SG CYS 84 B CYS 84 1_555 B SG CYS 311 B CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 215 B CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf7 B SG CYS 230 B CYS 230 1_555 B SG CYS 247 B CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf8 C SG CYS 7 C CYS 9 1_555 C SG CYS 46 C CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf9 C SG CYS 17 C CYS 19 1_555 C SG CYS 37 C CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf10 C SG CYS 116 C CYS 118 1_555 C SG CYS 192 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf11 C SG CYS 135 C CYS 137 1_555 C SG CYS 329 C CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf12 C SG CYS 156 C CYS 158 1_555 C SG CYS 172 C CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf13 C SG CYS 159 C CYS 161 1_555 C SG CYS 177 C CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf14 C SG CYS 169 C CYS 171 1_555 C SG CYS 175 C CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf15 C SG CYS 225 C CYS 227 1_555 C SG CYS 239 C CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf16 C SG CYS 343 C CYS 345 1_555 C SG CYS 375 C CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf17 C SG CYS 353 C CYS 355 1_555 C SG CYS 366 C CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf18 C SG CYS 400 C CYS 402 1_555 C SG CYS 672 C CYS 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf19 C SG CYS 416 C CYS 418 1_555 C SG CYS 635 C CYS 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf20 C SG CYS 448 C CYS 450 1_555 C SG CYS 521 C CYS 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf21 C SG CYS 472 C CYS 474 1_555 C SG CYS 663 C CYS 665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf22 C SG CYS 482 C CYS 484 1_555 C SG CYS 496 C CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf23 C SG CYS 493 C CYS 495 1_555 C SG CYS 504 C CYS 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf24 C SG CYS 561 C CYS 563 1_555 C SG CYS 575 C CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
covale ? covale1 C ND2 ASN 411 C ASN 413 1_555 E C1 NAG . C NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
metalc ? metalc1 C OD1 ASP 390 C ASP 392 1_555 D FE FE . C FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc2 C OH TYR 424 C TYR 426 1_555 D FE FE . C FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc3 C OH TYR 515 C TYR 517 1_555 D FE FE . C FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
metalc ? metalc4 C NE2 HIS 583 C HIS 585 1_555 D FE FE . C FE 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6SOY 
_atom_sites.fract_transf_matrix[1][1]    0.006117 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004907 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00925 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011148 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 FE C 1 701 1 FE FE . 
E 5 NAG C 1 702 1 NAG NAG . 
F 6 HOH A 1 401 12 HOH HOH . 
F 6 HOH A 2 402 25 HOH HOH . 
F 6 HOH A 3 403 23 HOH HOH . 
F 6 HOH A 4 404 21 HOH HOH . 
F 6 HOH A 5 405 17 HOH HOH . 
F 6 HOH A 6 406 26 HOH HOH . 
F 6 HOH A 7 407 16 HOH HOH . 
F 6 HOH A 8 408 19 HOH HOH . 
F 6 HOH A 9 409 22 HOH HOH . 
F 6 HOH A 10 410 29 HOH HOH . 
F 6 HOH A 11 411 18 HOH HOH . 
F 6 HOH A 12 412 24 HOH HOH . 
F 6 HOH A 13 413 27 HOH HOH . 
G 6 HOH B 1 401 28 HOH HOH . 
G 6 HOH B 2 402 5 HOH HOH . 
G 6 HOH B 3 403 4 HOH HOH . 
G 6 HOH B 4 404 3 HOH HOH . 
G 6 HOH B 5 405 20 HOH HOH . 
G 6 HOH B 6 406 30 HOH HOH . 
H 6 HOH C 1 801 34 HOH HOH . 
H 6 HOH C 2 802 2 HOH HOH . 
H 6 HOH C 3 803 38 HOH HOH . 
H 6 HOH C 4 804 11 HOH HOH . 
H 6 HOH C 5 805 14 HOH HOH . 
H 6 HOH C 6 806 8 HOH HOH . 
H 6 HOH C 7 807 35 HOH HOH . 
H 6 HOH C 8 808 36 HOH HOH . 
H 6 HOH C 9 809 13 HOH HOH . 
H 6 HOH C 10 810 33 HOH HOH . 
H 6 HOH C 11 811 31 HOH HOH . 
H 6 HOH C 12 812 7 HOH HOH . 
H 6 HOH C 13 813 1 HOH HOH . 
H 6 HOH C 14 814 32 HOH HOH . 
H 6 HOH C 15 815 37 HOH HOH . 
H 6 HOH C 16 816 6 HOH HOH . 
H 6 HOH C 17 817 9 HOH HOH . 
H 6 HOH C 18 818 10 HOH HOH . 
H 6 HOH C 19 819 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 5 98.427 110.447 -80.588 1 141.38 ? C1 NAG 702 C 1 
HETATM 2 C C2 NAG . . . E 5 99.182 111.724 -80.961 1 143.53 ? C2 NAG 702 C 1 
HETATM 3 C C3 NAG . . . E 5 99.442 111.638 -82.464 1 144.88 ? C3 NAG 702 C 1 
HETATM 4 C C4 NAG . . . E 5 100.27 110.4 -82.791 1 145.35 ? C4 NAG 702 C 1 
HETATM 5 C C5 NAG . . . E 5 99.54 109.133 -82.34 1 145.34 ? C5 NAG 702 C 1 
HETATM 6 C C6 NAG . . . E 5 100.398 107.883 -82.406 1 146.69 ? C6 NAG 702 C 1 
HETATM 7 C C7 NAG . . . E 5 98.975 113.957 -79.935 1 144.65 ? C7 NAG 702 C 1 
HETATM 8 C C8 NAG . . . E 5 98.08 115.144 -79.732 1 144.63 ? C8 NAG 702 C 1 
HETATM 9 N N2 NAG . . . E 5 98.45 112.939 -80.636 1 144.17 ? N2 NAG 702 C 1 
HETATM 10 O O3 NAG . . . E 5 100.12 112.808 -82.907 1 145.82 ? O3 NAG 702 C 1 
HETATM 11 O O4 NAG . . . E 5 100.532 110.346 -84.191 1 145.71 ? O4 NAG 702 C 1 
HETATM 12 O O5 NAG . . . E 5 99.13 109.253 -80.962 1 143.64 ? O5 NAG 702 C 1 
HETATM 13 O O6 NAG . . . E 5 100.925 107.635 -83.704 1 147.41 ? O6 NAG 702 C 1 
HETATM 14 O O7 NAG . . . E 5 100.119 113.92 -79.487 1 144.6 ? O7 NAG 702 C 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#