data_6SP2
#
_model_server_result.job_id            9U4FoTGdEA41BkwbGU_ONw 
_model_server_result.datetime_utc      '2024-10-19 16:23:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6sp2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1001}' 
#
_entry.id    6SP2 
#
_exptl.entry_id    6SP2 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6SP2 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SP2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 K N N 
? 4 O N N 
? 4 S N N 
? 4 W N N 
? 4 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 71 A CYS 71 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 238 A CYS 238 1_555 A SG CYS 299 A CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 B SG CYS 71 B CYS 71 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 B SG CYS 238 B CYS 238 1_555 B SG CYS 299 B CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 C SG CYS 71 C CYS 71 1_555 C SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf6 C SG CYS 238 C CYS 238 1_555 C SG CYS 299 C CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 D SG CYS 71 D CYS 71 1_555 D SG CYS 95 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf8 D SG CYS 238 D CYS 238 1_555 D SG CYS 299 D CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf9 E SG CYS 71 E CYS 71 1_555 E SG CYS 95 E CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf10 E SG CYS 238 E CYS 238 1_555 E SG CYS 299 E CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf11 F SG CYS 71 F CYS 71 1_555 F SG CYS 95 F CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf12 F SG CYS 238 F CYS 238 1_555 F SG CYS 299 F CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     6SP2 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 LMN A 1 601 1003 LMN LMN . 
H 3 P5S A 1 602 1004 P5S P5S . 
I 4 CDL A 1 603 1001 CDL CDL . 
J 2 LMN A 1 604 1002 LMN LMN . 
K 4 CDL B 1 1001 1001 CDL CDL . 
L 2 LMN B 1 1002 1002 LMN LMN . 
M 2 LMN B 1 1003 1003 LMN LMN . 
N 3 P5S B 1 1004 1004 P5S P5S . 
O 4 CDL C 1 1001 1001 CDL CDL . 
P 2 LMN C 1 1002 1002 LMN LMN . 
Q 2 LMN C 1 1003 1003 LMN LMN . 
R 3 P5S C 1 1004 1004 P5S P5S . 
S 4 CDL D 1 1001 1001 CDL CDL . 
T 2 LMN D 1 1002 1002 LMN LMN . 
U 2 LMN D 1 1003 1003 LMN LMN . 
V 3 P5S D 1 1004 1004 P5S P5S . 
W 4 CDL E 1 1001 1001 CDL CDL . 
X 2 LMN E 1 1002 1002 LMN LMN . 
Y 2 LMN E 1 1003 1003 LMN LMN . 
Z 3 P5S E 1 1004 1004 P5S P5S . 
AA 4 CDL F 1 1001 1001 CDL CDL . 
BA 2 LMN F 1 1002 1002 LMN LMN . 
CA 2 LMN F 1 1003 1003 LMN LMN . 
DA 3 P5S F 1 1004 1004 P5S P5S . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . K 4 229.824 201.886 177.98 1 150.88 ? C1 CDL 1001 B 1 
HETATM 2 O O1 CDL . . . K 4 229.332 200.915 178.907 1 150.88 ? O1 CDL 1001 B 1 
HETATM 3 C CA2 CDL . . . K 4 229.675 201.359 176.575 1 150.88 ? CA2 CDL 1001 B 1 
HETATM 4 O OA2 CDL . . . K 4 228.286 201.442 176.199 1 150.88 ? OA2 CDL 1001 B 1 
HETATM 5 P PA1 CDL . . . K 4 227.641 200.273 175.332 1 150.88 ? PA1 CDL 1001 B 1 
HETATM 6 O OA3 CDL . . . K 4 227.653 199.028 176.134 1 150.88 ? OA3 CDL 1001 B 1 
HETATM 7 O OA4 CDL . . . K 4 228.31 200.284 174.014 1 150.88 ? OA4 CDL 1001 B 1 
HETATM 8 O OA5 CDL . . . K 4 226.132 200.736 175.106 1 150.88 ? OA5 CDL 1001 B 1 
HETATM 9 C CA3 CDL . . . K 4 225.462 201.551 176.09 1 150.88 ? CA3 CDL 1001 B 1 
HETATM 10 C CA4 CDL . . . K 4 225.185 200.715 177.312 1 150.88 ? CA4 CDL 1001 B 1 
HETATM 11 O OA6 CDL . . . K 4 223.84 200.931 177.857 1 150.88 ? OA6 CDL 1001 B 1 
HETATM 12 C CA5 CDL . . . K 4 223.503 202.142 178.331 1 150.88 ? CA5 CDL 1001 B 1 
HETATM 13 O OA7 CDL . . . K 4 224.001 203.173 177.972 1 150.88 ? OA7 CDL 1001 B 1 
HETATM 14 C C11 CDL . . . K 4 222.453 202.034 179.392 1 150.88 ? C11 CDL 1001 B 1 
HETATM 15 C C12 CDL . . . K 4 221.044 201.999 178.847 1 150.88 ? C12 CDL 1001 B 1 
HETATM 16 C C13 CDL . . . K 4 220.03 202.122 179.947 1 150.88 ? C13 CDL 1001 B 1 
HETATM 17 C C14 CDL . . . K 4 220.222 201.133 181.064 1 150.88 ? C14 CDL 1001 B 1 
HETATM 18 C C15 CDL . . . K 4 219.13 201.219 182.098 1 150.88 ? C15 CDL 1001 B 1 
HETATM 19 C C16 CDL . . . K 4 219.156 200.128 183.141 1 150.88 ? C16 CDL 1001 B 1 
HETATM 20 C C17 CDL . . . K 4 217.932 200.158 184.026 1 150.88 ? C17 CDL 1001 B 1 
HETATM 21 C C18 CDL . . . K 4 217.802 198.984 184.964 1 150.88 ? C18 CDL 1001 B 1 
HETATM 22 C C19 CDL . . . K 4 218.718 199.027 186.164 1 150.88 ? C19 CDL 1001 B 1 
HETATM 23 C C20 CDL . . . K 4 218.628 197.774 187.006 1 150.88 ? C20 CDL 1001 B 1 
HETATM 24 C C21 CDL . . . K 4 219.486 197.803 188.244 1 150.88 ? C21 CDL 1001 B 1 
HETATM 25 C C22 CDL . . . K 4 218.875 198.58 189.382 1 150.88 ? C22 CDL 1001 B 1 
HETATM 26 C C23 CDL . . . K 4 219.762 198.641 190.607 1 150.88 ? C23 CDL 1001 B 1 
HETATM 27 C C24 CDL . . . K 4 219.001 198.902 191.887 1 150.88 ? C24 CDL 1001 B 1 
HETATM 28 C C25 CDL . . . K 4 217.914 197.881 192.13 1 150.88 ? C25 CDL 1001 B 1 
HETATM 29 C C26 CDL . . . K 4 217.126 198.105 193.382 1 150.88 ? C26 CDL 1001 B 1 
HETATM 30 C C27 CDL . . . K 4 216.012 197.117 193.541 1 150.88 ? C27 CDL 1001 B 1 
HETATM 31 C CA6 CDL . . . K 4 226.141 200.98 178.438 1 150.88 ? CA6 CDL 1001 B 1 
HETATM 32 O OA8 CDL . . . K 4 225.62 200.25 179.57 1 150.88 ? OA8 CDL 1001 B 1 
HETATM 33 C CA7 CDL . . . K 4 226.509 199.732 180.407 1 150.88 ? CA7 CDL 1001 B 1 
HETATM 34 O OA9 CDL . . . K 4 227.694 199.884 180.297 1 150.88 ? OA9 CDL 1001 B 1 
HETATM 35 C C31 CDL . . . K 4 225.842 198.944 181.491 1 150.88 ? C31 CDL 1001 B 1 
HETATM 36 C C32 CDL . . . K 4 224.963 199.803 182.379 1 150.88 ? C32 CDL 1001 B 1 
HETATM 37 C C33 CDL . . . K 4 224.609 199.119 183.676 1 150.88 ? C33 CDL 1001 B 1 
HETATM 38 C C34 CDL . . . K 4 223.922 200.037 184.655 1 150.88 ? C34 CDL 1001 B 1 
HETATM 39 C C35 CDL . . . K 4 223.884 199.507 186.068 1 150.88 ? C35 CDL 1001 B 1 
HETATM 40 C C36 CDL . . . K 4 223.593 200.582 187.091 1 150.88 ? C36 CDL 1001 B 1 
HETATM 41 C C37 CDL . . . K 4 223.7 200.12 188.528 1 150.88 ? C37 CDL 1001 B 1 
HETATM 42 C C38 CDL . . . K 4 223.558 201.249 189.524 1 150.88 ? C38 CDL 1001 B 1 
HETATM 43 C C39 CDL . . . K 4 223.376 200.791 190.953 1 150.88 ? C39 CDL 1001 B 1 
HETATM 44 C C40 CDL . . . K 4 223.273 201.934 191.943 1 150.88 ? C40 CDL 1001 B 1 
HETATM 45 C C41 CDL . . . K 4 222.161 202.918 191.637 1 150.88 ? C41 CDL 1001 B 1 
HETATM 46 C C42 CDL . . . K 4 220.765 202.335 191.754 1 150.88 ? C42 CDL 1001 B 1 
HETATM 47 C C43 CDL . . . K 4 219.661 203.281 191.317 1 150.88 ? C43 CDL 1001 B 1 
HETATM 48 C C44 CDL . . . K 4 219.119 203.012 189.922 1 150.88 ? C44 CDL 1001 B 1 
HETATM 49 C C45 CDL . . . K 4 220.149 203.108 188.811 1 150.88 ? C45 CDL 1001 B 1 
HETATM 50 C C46 CDL . . . K 4 219.619 202.763 187.439 1 150.88 ? C46 CDL 1001 B 1 
HETATM 51 C C47 CDL . . . K 4 220.696 202.686 186.39 1 150.88 ? C47 CDL 1001 B 1 
HETATM 52 C CB2 CDL . . . K 4 231.253 202.212 178.331 1 150.88 ? CB2 CDL 1001 B 1 
HETATM 53 O OB2 CDL . . . K 4 232.031 201.002 178.266 1 150.88 ? OB2 CDL 1001 B 1 
HETATM 54 P PB2 CDL . . . K 4 233.444 200.964 179.001 1 150.88 ? PB2 CDL 1001 B 1 
HETATM 55 O OB3 CDL . . . K 4 234.159 199.748 178.557 1 150.88 ? OB3 CDL 1001 B 1 
HETATM 56 O OB4 CDL . . . K 4 234.1 202.284 178.847 1 150.88 ? OB4 CDL 1001 B 1 
HETATM 57 O OB5 CDL . . . K 4 233.021 200.77 180.526 1 150.88 ? OB5 CDL 1001 B 1 
HETATM 58 C CB3 CDL . . . K 4 232.052 199.772 180.913 1 150.88 ? CB3 CDL 1001 B 1 
HETATM 59 C CB4 CDL . . . K 4 232.566 199.099 182.156 1 150.88 ? CB4 CDL 1001 B 1 
HETATM 60 O OB6 CDL . . . K 4 231.476 199.014 183.13 1 150.88 ? OB6 CDL 1001 B 1 
HETATM 61 C CB5 CDL . . . K 4 230.536 198.079 182.925 1 150.88 ? CB5 CDL 1001 B 1 
HETATM 62 O OB7 CDL . . . K 4 230.48 197.391 181.945 1 150.88 ? OB7 CDL 1001 B 1 
HETATM 63 C C51 CDL . . . K 4 229.593 197.981 184.083 1 150.88 ? C51 CDL 1001 B 1 
HETATM 64 C C52 CDL . . . K 4 229.079 196.562 184.281 1 150.88 ? C52 CDL 1001 B 1 
HETATM 65 C C53 CDL . . . K 4 228.28 196.399 185.551 1 150.88 ? C53 CDL 1001 B 1 
HETATM 66 C C54 CDL . . . K 4 229.062 196.773 186.79 1 150.88 ? C54 CDL 1001 B 1 
HETATM 67 C C55 CDL . . . K 4 228.232 196.809 188.053 1 150.88 ? C55 CDL 1001 B 1 
HETATM 68 C C56 CDL . . . K 4 228.971 197.386 189.243 1 150.88 ? C56 CDL 1001 B 1 
HETATM 69 C C57 CDL . . . K 4 228.116 197.509 190.487 1 150.88 ? C57 CDL 1001 B 1 
HETATM 70 C C58 CDL . . . K 4 226.879 198.366 190.298 1 150.88 ? C58 CDL 1001 B 1 
HETATM 71 C C59 CDL . . . K 4 225.979 198.408 191.519 1 150.88 ? C59 CDL 1001 B 1 
HETATM 72 C CB6 CDL . . . K 4 233.698 199.901 182.738 1 150.88 ? CB6 CDL 1001 B 1 
HETATM 73 O OB8 CDL . . . K 4 234.109 199.404 184.032 1 150.88 ? OB8 CDL 1001 B 1 
HETATM 74 C CB7 CDL . . . K 4 235.396 199.577 184.344 1 150.88 ? CB7 CDL 1001 B 1 
HETATM 75 O OB9 CDL . . . K 4 236.231 199.93 183.557 1 150.88 ? OB9 CDL 1001 B 1 
HETATM 76 C C71 CDL . . . K 4 235.651 199.313 185.798 1 150.88 ? C71 CDL 1001 B 1 
HETATM 77 C C72 CDL . . . K 4 235.844 200.601 186.588 1 150.88 ? C72 CDL 1001 B 1 
HETATM 78 C C73 CDL . . . K 4 234.778 200.825 187.65 1 150.88 ? C73 CDL 1001 B 1 
HETATM 79 C C74 CDL . . . K 4 233.355 200.566 187.181 1 150.88 ? C74 CDL 1001 B 1 
HETATM 80 C C75 CDL . . . K 4 232.292 201.059 188.148 1 150.88 ? C75 CDL 1001 B 1 
HETATM 81 C C76 CDL . . . K 4 232.636 200.832 189.607 1 150.88 ? C76 CDL 1001 B 1 
HETATM 82 C C77 CDL . . . K 4 231.508 201.15 190.57 1 150.88 ? C77 CDL 1001 B 1 
HETATM 83 C C78 CDL . . . K 4 231.897 201.003 192.031 1 150.88 ? C78 CDL 1001 B 1 
HETATM 84 C C79 CDL . . . K 4 232.82 202.099 192.539 1 150.88 ? C79 CDL 1001 B 1 
HETATM 85 C C80 CDL . . . K 4 232.093 203.299 193.125 1 150.88 ? C80 CDL 1001 B 1 
HETATM 86 C C81 CDL . . . K 4 231.879 203.225 194.627 1 150.88 ? C81 CDL 1001 B 1 
HETATM 87 C C82 CDL . . . K 4 233.027 203.794 195.439 1 150.88 ? C82 CDL 1001 B 1 
HETATM 88 C C83 CDL . . . K 4 232.981 203.433 196.914 1 150.88 ? C83 CDL 1001 B 1 
HETATM 89 C C84 CDL . . . K 4 233.883 204.293 197.784 1 150.88 ? C84 CDL 1001 B 1 
HETATM 90 C C85 CDL . . . K 4 235.334 204.35 197.325 1 150.88 ? C85 CDL 1001 B 1 
HETATM 91 C C86 CDL . . . K 4 236.186 203.179 197.754 1 150.88 ? C86 CDL 1001 B 1 
HETATM 92 C C87 CDL . . . K 4 236.43 203.144 199.242 1 150.88 ? C87 CDL 1001 B 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    165 
_model_server_stats.query_time_ms           391 
_model_server_stats.encode_time_ms          42 
_model_server_stats.element_count           92 
#