data_6SP2
#
_model_server_result.job_id            18Zd4LlJP39AX2tFiJZfMA 
_model_server_result.datetime_utc      '2024-10-19 16:45:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6sp2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":1001}' 
#
_entry.id    6SP2 
#
_exptl.entry_id    6SP2 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6SP2 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SP2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 K N N 
? 4 O N N 
? 4 S N N 
? 4 W N N 
? 4 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 71 A CYS 71 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 238 A CYS 238 1_555 A SG CYS 299 A CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 B SG CYS 71 B CYS 71 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 B SG CYS 238 B CYS 238 1_555 B SG CYS 299 B CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 C SG CYS 71 C CYS 71 1_555 C SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf6 C SG CYS 238 C CYS 238 1_555 C SG CYS 299 C CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 D SG CYS 71 D CYS 71 1_555 D SG CYS 95 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf8 D SG CYS 238 D CYS 238 1_555 D SG CYS 299 D CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf9 E SG CYS 71 E CYS 71 1_555 E SG CYS 95 E CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf10 E SG CYS 238 E CYS 238 1_555 E SG CYS 299 E CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf11 F SG CYS 71 F CYS 71 1_555 F SG CYS 95 F CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf12 F SG CYS 238 F CYS 238 1_555 F SG CYS 299 F CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     6SP2 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 LMN A 1 601 1003 LMN LMN . 
H 3 P5S A 1 602 1004 P5S P5S . 
I 4 CDL A 1 603 1001 CDL CDL . 
J 2 LMN A 1 604 1002 LMN LMN . 
K 4 CDL B 1 1001 1001 CDL CDL . 
L 2 LMN B 1 1002 1002 LMN LMN . 
M 2 LMN B 1 1003 1003 LMN LMN . 
N 3 P5S B 1 1004 1004 P5S P5S . 
O 4 CDL C 1 1001 1001 CDL CDL . 
P 2 LMN C 1 1002 1002 LMN LMN . 
Q 2 LMN C 1 1003 1003 LMN LMN . 
R 3 P5S C 1 1004 1004 P5S P5S . 
S 4 CDL D 1 1001 1001 CDL CDL . 
T 2 LMN D 1 1002 1002 LMN LMN . 
U 2 LMN D 1 1003 1003 LMN LMN . 
V 3 P5S D 1 1004 1004 P5S P5S . 
W 4 CDL E 1 1001 1001 CDL CDL . 
X 2 LMN E 1 1002 1002 LMN LMN . 
Y 2 LMN E 1 1003 1003 LMN LMN . 
Z 3 P5S E 1 1004 1004 P5S P5S . 
AA 4 CDL F 1 1001 1001 CDL CDL . 
BA 2 LMN F 1 1002 1002 LMN LMN . 
CA 2 LMN F 1 1003 1003 LMN LMN . 
DA 3 P5S F 1 1004 1004 P5S P5S . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . W 4 156.572 184.522 177.99 1 150.62 ? C1 CDL 1001 E 1 
HETATM 2 O O1 CDL . . . W 4 157.063 185.492 178.918 1 150.62 ? O1 CDL 1001 E 1 
HETATM 3 C CA2 CDL . . . W 4 156.721 185.051 176.586 1 150.62 ? CA2 CDL 1001 E 1 
HETATM 4 O OA2 CDL . . . W 4 158.11 184.968 176.21 1 150.62 ? OA2 CDL 1001 E 1 
HETATM 5 P PA1 CDL . . . W 4 158.756 186.139 175.345 1 150.62 ? PA1 CDL 1001 E 1 
HETATM 6 O OA3 CDL . . . W 4 158.743 187.383 176.148 1 150.62 ? OA3 CDL 1001 E 1 
HETATM 7 O OA4 CDL . . . W 4 158.087 186.13 174.027 1 150.62 ? OA4 CDL 1001 E 1 
HETATM 8 O OA5 CDL . . . W 4 160.264 185.676 175.119 1 150.62 ? OA5 CDL 1001 E 1 
HETATM 9 C CA3 CDL . . . W 4 160.935 184.861 176.102 1 150.62 ? CA3 CDL 1001 E 1 
HETATM 10 C CA4 CDL . . . W 4 161.211 185.695 177.326 1 150.62 ? CA4 CDL 1001 E 1 
HETATM 11 O OA6 CDL . . . W 4 162.556 185.479 177.871 1 150.62 ? OA6 CDL 1001 E 1 
HETATM 12 C CA5 CDL . . . W 4 162.893 184.267 178.344 1 150.62 ? CA5 CDL 1001 E 1 
HETATM 13 O OA7 CDL . . . W 4 162.395 183.237 177.983 1 150.62 ? OA7 CDL 1001 E 1 
HETATM 14 C C11 CDL . . . W 4 163.942 184.375 179.405 1 150.62 ? C11 CDL 1001 E 1 
HETATM 15 C C12 CDL . . . W 4 165.352 184.411 178.861 1 150.62 ? C12 CDL 1001 E 1 
HETATM 16 C C13 CDL . . . W 4 166.365 184.286 179.961 1 150.62 ? C13 CDL 1001 E 1 
HETATM 17 C C14 CDL . . . W 4 166.172 185.273 181.079 1 150.62 ? C14 CDL 1001 E 1 
HETATM 18 C C15 CDL . . . W 4 167.264 185.186 182.113 1 150.62 ? C15 CDL 1001 E 1 
HETATM 19 C C16 CDL . . . W 4 167.238 186.277 183.158 1 150.62 ? C16 CDL 1001 E 1 
HETATM 20 C C17 CDL . . . W 4 168.461 186.246 184.043 1 150.62 ? C17 CDL 1001 E 1 
HETATM 21 C C18 CDL . . . W 4 168.59 187.418 184.983 1 150.62 ? C18 CDL 1001 E 1 
HETATM 22 C C19 CDL . . . W 4 167.674 187.373 186.182 1 150.62 ? C19 CDL 1001 E 1 
HETATM 23 C C20 CDL . . . W 4 167.763 188.626 187.026 1 150.62 ? C20 CDL 1001 E 1 
HETATM 24 C C21 CDL . . . W 4 166.905 188.595 188.263 1 150.62 ? C21 CDL 1001 E 1 
HETATM 25 C C22 CDL . . . W 4 167.515 187.817 189.401 1 150.62 ? C22 CDL 1001 E 1 
HETATM 26 C C23 CDL . . . W 4 166.628 187.754 190.626 1 150.62 ? C23 CDL 1001 E 1 
HETATM 27 C C24 CDL . . . W 4 167.388 187.492 191.905 1 150.62 ? C24 CDL 1001 E 1 
HETATM 28 C C25 CDL . . . W 4 168.475 188.513 192.15 1 150.62 ? C25 CDL 1001 E 1 
HETATM 29 C C26 CDL . . . W 4 169.263 188.287 193.402 1 150.62 ? C26 CDL 1001 E 1 
HETATM 30 C C27 CDL . . . W 4 170.376 189.275 193.563 1 150.62 ? C27 CDL 1001 E 1 
HETATM 31 C CA6 CDL . . . W 4 160.254 185.429 178.451 1 150.62 ? CA6 CDL 1001 E 1 
HETATM 32 O OA8 CDL . . . W 4 160.775 186.157 179.584 1 150.62 ? OA8 CDL 1001 E 1 
HETATM 33 C CA7 CDL . . . W 4 159.885 186.674 180.421 1 150.62 ? CA7 CDL 1001 E 1 
HETATM 34 O OA9 CDL . . . W 4 158.701 186.522 180.31 1 150.62 ? OA9 CDL 1001 E 1 
HETATM 35 C C31 CDL . . . W 4 160.552 187.46 181.506 1 150.62 ? C31 CDL 1001 E 1 
HETATM 36 C C32 CDL . . . W 4 161.431 186.601 182.394 1 150.62 ? C32 CDL 1001 E 1 
HETATM 37 C C33 CDL . . . W 4 161.784 187.283 183.692 1 150.62 ? C33 CDL 1001 E 1 
HETATM 38 C C34 CDL . . . W 4 162.471 186.365 184.67 1 150.62 ? C34 CDL 1001 E 1 
HETATM 39 C C35 CDL . . . W 4 162.508 186.893 186.084 1 150.62 ? C35 CDL 1001 E 1 
HETATM 40 C C36 CDL . . . W 4 162.799 185.816 187.105 1 150.62 ? C36 CDL 1001 E 1 
HETATM 41 C C37 CDL . . . W 4 162.691 186.277 188.543 1 150.62 ? C37 CDL 1001 E 1 
HETATM 42 C C38 CDL . . . W 4 162.833 185.146 189.538 1 150.62 ? C38 CDL 1001 E 1 
HETATM 43 C C39 CDL . . . W 4 163.014 185.602 190.967 1 150.62 ? C39 CDL 1001 E 1 
HETATM 44 C C40 CDL . . . W 4 163.117 184.459 191.955 1 150.62 ? C40 CDL 1001 E 1 
HETATM 45 C C41 CDL . . . W 4 164.23 183.475 191.649 1 150.62 ? C41 CDL 1001 E 1 
HETATM 46 C C42 CDL . . . W 4 165.625 184.058 191.768 1 150.62 ? C42 CDL 1001 E 1 
HETATM 47 C C43 CDL . . . W 4 166.729 183.113 191.33 1 150.62 ? C43 CDL 1001 E 1 
HETATM 48 C C44 CDL . . . W 4 167.273 183.384 189.935 1 150.62 ? C44 CDL 1001 E 1 
HETATM 49 C C45 CDL . . . W 4 166.242 183.289 188.824 1 150.62 ? C45 CDL 1001 E 1 
HETATM 50 C C46 CDL . . . W 4 166.773 183.636 187.452 1 150.62 ? C46 CDL 1001 E 1 
HETATM 51 C C47 CDL . . . W 4 165.696 183.714 186.403 1 150.62 ? C47 CDL 1001 E 1 
HETATM 52 C CB2 CDL . . . W 4 155.143 184.195 178.34 1 150.62 ? CB2 CDL 1001 E 1 
HETATM 53 O OB2 CDL . . . W 4 154.364 185.405 178.276 1 150.62 ? OB2 CDL 1001 E 1 
HETATM 54 P PB2 CDL . . . W 4 152.952 185.442 179.011 1 150.62 ? PB2 CDL 1001 E 1 
HETATM 55 O OB3 CDL . . . W 4 152.237 186.659 178.568 1 150.62 ? OB3 CDL 1001 E 1 
HETATM 56 O OB4 CDL . . . W 4 152.295 184.122 178.855 1 150.62 ? OB4 CDL 1001 E 1 
HETATM 57 O OB5 CDL . . . W 4 153.373 185.634 180.537 1 150.62 ? OB5 CDL 1001 E 1 
HETATM 58 C CB3 CDL . . . W 4 154.342 186.632 180.924 1 150.62 ? CB3 CDL 1001 E 1 
HETATM 59 C CB4 CDL . . . W 4 153.828 187.303 182.168 1 150.62 ? CB4 CDL 1001 E 1 
HETATM 60 O OB6 CDL . . . W 4 154.918 187.387 183.143 1 150.62 ? OB6 CDL 1001 E 1 
HETATM 61 C CB5 CDL . . . W 4 155.857 188.323 182.939 1 150.62 ? CB5 CDL 1001 E 1 
HETATM 62 O OB7 CDL . . . W 4 155.914 189.012 181.961 1 150.62 ? OB7 CDL 1001 E 1 
HETATM 63 C C51 CDL . . . W 4 156.799 188.42 184.098 1 150.62 ? C51 CDL 1001 E 1 
HETATM 64 C C52 CDL . . . W 4 157.313 189.839 184.298 1 150.62 ? C52 CDL 1001 E 1 
HETATM 65 C C53 CDL . . . W 4 158.111 190 185.569 1 150.62 ? C53 CDL 1001 E 1 
HETATM 66 C C54 CDL . . . W 4 157.329 189.625 186.806 1 150.62 ? C54 CDL 1001 E 1 
HETATM 67 C C55 CDL . . . W 4 158.158 189.587 188.07 1 150.62 ? C55 CDL 1001 E 1 
HETATM 68 C C56 CDL . . . W 4 157.419 189.009 189.259 1 150.62 ? C56 CDL 1001 E 1 
HETATM 69 C C57 CDL . . . W 4 158.274 188.884 190.503 1 150.62 ? C57 CDL 1001 E 1 
HETATM 70 C C58 CDL . . . W 4 159.511 188.027 190.314 1 150.62 ? C58 CDL 1001 E 1 
HETATM 71 C C59 CDL . . . W 4 160.411 187.984 191.535 1 150.62 ? C59 CDL 1001 E 1 
HETATM 72 C CB6 CDL . . . W 4 152.696 186.5 182.749 1 150.62 ? CB6 CDL 1001 E 1 
HETATM 73 O OB8 CDL . . . W 4 152.284 186.996 184.043 1 150.62 ? OB8 CDL 1001 E 1 
HETATM 74 C CB7 CDL . . . W 4 150.997 186.822 184.355 1 150.62 ? CB7 CDL 1001 E 1 
HETATM 75 O OB9 CDL . . . W 4 150.162 186.47 183.567 1 150.62 ? OB9 CDL 1001 E 1 
HETATM 76 C C71 CDL . . . W 4 150.741 187.084 185.809 1 150.62 ? C71 CDL 1001 E 1 
HETATM 77 C C72 CDL . . . W 4 150.548 185.795 186.597 1 150.62 ? C72 CDL 1001 E 1 
HETATM 78 C C73 CDL . . . W 4 151.614 185.57 187.659 1 150.62 ? C73 CDL 1001 E 1 
HETATM 79 C C74 CDL . . . W 4 153.036 185.83 187.191 1 150.62 ? C74 CDL 1001 E 1 
HETATM 80 C C75 CDL . . . W 4 154.099 185.335 188.158 1 150.62 ? C75 CDL 1001 E 1 
HETATM 81 C C76 CDL . . . W 4 153.755 185.561 189.617 1 150.62 ? C76 CDL 1001 E 1 
HETATM 82 C C77 CDL . . . W 4 154.882 185.242 190.58 1 150.62 ? C77 CDL 1001 E 1 
HETATM 83 C C78 CDL . . . W 4 154.493 185.387 192.041 1 150.62 ? C78 CDL 1001 E 1 
HETATM 84 C C79 CDL . . . W 4 153.57 184.291 192.548 1 150.62 ? C79 CDL 1001 E 1 
HETATM 85 C C80 CDL . . . W 4 154.297 183.089 193.132 1 150.62 ? C80 CDL 1001 E 1 
HETATM 86 C C81 CDL . . . W 4 154.51 183.162 194.635 1 150.62 ? C81 CDL 1001 E 1 
HETATM 87 C C82 CDL . . . W 4 153.362 182.592 195.446 1 150.62 ? C82 CDL 1001 E 1 
HETATM 88 C C83 CDL . . . W 4 153.407 182.951 196.921 1 150.62 ? C83 CDL 1001 E 1 
HETATM 89 C C84 CDL . . . W 4 152.505 182.09 197.789 1 150.62 ? C84 CDL 1001 E 1 
HETATM 90 C C85 CDL . . . W 4 151.055 182.033 197.329 1 150.62 ? C85 CDL 1001 E 1 
HETATM 91 C C86 CDL . . . W 4 150.202 183.203 197.76 1 150.62 ? C86 CDL 1001 E 1 
HETATM 92 C C87 CDL . . . W 4 149.957 183.236 199.248 1 150.62 ? C87 CDL 1001 E 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           369 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           92 
#