data_6SP2
#
_model_server_result.job_id            NbLgGAWIXU0j2OhZx-XaSw 
_model_server_result.datetime_utc      '2024-10-19 16:24:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6sp2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":1004}' 
#
_entry.id    6SP2 
#
_exptl.entry_id    6SP2 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              792.075 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6SP2 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SP2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 N N N 
? 3 R N N 
? 3 V N N 
? 3 Z N N 
? 3 DA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 71 A CYS 71 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 238 A CYS 238 1_555 A SG CYS 299 A CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 B SG CYS 71 B CYS 71 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 B SG CYS 238 B CYS 238 1_555 B SG CYS 299 B CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 C SG CYS 71 C CYS 71 1_555 C SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf6 C SG CYS 238 C CYS 238 1_555 C SG CYS 299 C CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 D SG CYS 71 D CYS 71 1_555 D SG CYS 95 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf8 D SG CYS 238 D CYS 238 1_555 D SG CYS 299 D CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf9 E SG CYS 71 E CYS 71 1_555 E SG CYS 95 E CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf10 E SG CYS 238 E CYS 238 1_555 E SG CYS 299 E CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf11 F SG CYS 71 F CYS 71 1_555 F SG CYS 95 F CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf12 F SG CYS 238 F CYS 238 1_555 F SG CYS 299 F CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C42 H82 N O10 P' 
_chem_comp.formula_weight    792.075 
_chem_comp.id                P5S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'phosphatidyl serine' 
#
_atom_sites.entry_id                     6SP2 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 LMN A 1 601 1003 LMN LMN . 
H 3 P5S A 1 602 1004 P5S P5S . 
I 4 CDL A 1 603 1001 CDL CDL . 
J 2 LMN A 1 604 1002 LMN LMN . 
K 4 CDL B 1 1001 1001 CDL CDL . 
L 2 LMN B 1 1002 1002 LMN LMN . 
M 2 LMN B 1 1003 1003 LMN LMN . 
N 3 P5S B 1 1004 1004 P5S P5S . 
O 4 CDL C 1 1001 1001 CDL CDL . 
P 2 LMN C 1 1002 1002 LMN LMN . 
Q 2 LMN C 1 1003 1003 LMN LMN . 
R 3 P5S C 1 1004 1004 P5S P5S . 
S 4 CDL D 1 1001 1001 CDL CDL . 
T 2 LMN D 1 1002 1002 LMN LMN . 
U 2 LMN D 1 1003 1003 LMN LMN . 
V 3 P5S D 1 1004 1004 P5S P5S . 
W 4 CDL E 1 1001 1001 CDL CDL . 
X 2 LMN E 1 1002 1002 LMN LMN . 
Y 2 LMN E 1 1003 1003 LMN LMN . 
Z 3 P5S E 1 1004 1004 P5S P5S . 
AA 4 CDL F 1 1001 1001 CDL CDL . 
BA 2 LMN F 1 1002 1002 LMN LMN . 
CA 2 LMN F 1 1003 1003 LMN LMN . 
DA 3 P5S F 1 1004 1004 P5S P5S . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C P5S . . . V 3 150.764 176.514 178.413 1 163.39 ? C P5S 1004 D 1 
HETATM 2 N N P5S . . . V 3 151.39 178.154 176.656 1 163.39 ? N P5S 1004 D 1 
HETATM 3 O O P5S . . . V 3 151.655 176.519 179.236 1 163.39 ? O P5S 1004 D 1 
HETATM 4 C C1 P5S . . . V 3 146.362 177.004 181.311 1 163.39 ? C1 P5S 1004 D 1 
HETATM 5 C C2 P5S . . . V 3 146.023 178.19 180.45 1 163.39 ? C2 P5S 1004 D 1 
HETATM 6 C C3 P5S . . . V 3 146.058 177.82 178.991 1 163.39 ? C3 P5S 1004 D 1 
HETATM 7 C CA P5S . . . V 3 150.356 177.76 177.627 1 163.39 ? CA P5S 1004 D 1 
HETATM 8 C CB P5S . . . V 3 149.035 177.519 176.914 1 163.39 ? CB P5S 1004 D 1 
HETATM 9 O OG P5S . . . V 3 148.33 178.776 176.84 1 163.39 ? OG P5S 1004 D 1 
HETATM 10 P P12 P5S . . . V 3 146.733 178.837 176.68 1 163.39 ? P12 P5S 1004 D 1 
HETATM 11 O O13 P5S . . . V 3 146.322 179.955 175.806 1 163.39 ? O13 P5S 1004 D 1 
HETATM 12 O O15 P5S . . . V 3 146.287 177.458 176.202 1 163.39 ? O15 P5S 1004 D 1 
HETATM 13 O O16 P5S . . . V 3 146.149 179.011 178.183 1 163.39 ? O16 P5S 1004 D 1 
HETATM 14 C C17 P5S . . . V 3 146.384 176.356 183.573 1 163.39 ? C17 P5S 1004 D 1 
HETATM 15 O O18 P5S . . . V 3 146.399 175.203 183.239 1 163.39 ? O18 P5S 1004 D 1 
HETATM 16 O O19 P5S . . . V 3 146.353 177.372 182.709 1 163.39 ? O19 P5S 1004 D 1 
HETATM 17 C C20 P5S . . . V 3 146.399 176.824 184.997 1 163.39 ? C20 P5S 1004 D 1 
HETATM 18 C C21 P5S . . . V 3 146.579 175.663 185.968 1 163.39 ? C21 P5S 1004 D 1 
HETATM 19 C C22 P5S . . . V 3 146.459 176.053 187.431 1 163.39 ? C22 P5S 1004 D 1 
HETATM 20 C C23 P5S . . . V 3 147.635 176.832 187.991 1 163.39 ? C23 P5S 1004 D 1 
HETATM 21 C C24 P5S . . . V 3 147.509 177.107 189.48 1 163.39 ? C24 P5S 1004 D 1 
HETATM 22 C C25 P5S . . . V 3 148.688 177.846 190.087 1 163.39 ? C25 P5S 1004 D 1 
HETATM 23 C C26 P5S . . . V 3 148.531 178.118 191.572 1 163.39 ? C26 P5S 1004 D 1 
HETATM 24 C C27 P5S . . . V 3 149.719 178.822 192.203 1 163.39 ? C27 P5S 1004 D 1 
HETATM 25 C C28 P5S . . . V 3 151.002 178.008 192.184 1 163.39 ? C28 P5S 1004 D 1 
HETATM 26 O O37 P5S . . . V 3 147.027 179.226 180.681 1 163.39 ? O37 P5S 1004 D 1 
HETATM 27 C C38 P5S . . . V 3 146.599 180.495 180.756 1 163.39 ? C38 P5S 1004 D 1 
HETATM 28 C C39 P5S . . . V 3 147.743 181.44 180.964 1 163.39 ? C39 P5S 1004 D 1 
HETATM 29 C C40 P5S . . . V 3 148.566 181.11 182.202 1 163.39 ? C40 P5S 1004 D 1 
HETATM 30 C C41 P5S . . . V 3 147.836 181.419 183.496 1 163.39 ? C41 P5S 1004 D 1 
HETATM 31 C C42 P5S . . . V 3 148.542 180.884 184.727 1 163.39 ? C42 P5S 1004 D 1 
HETATM 32 C C43 P5S . . . V 3 147.995 181.414 186.04 1 163.39 ? C43 P5S 1004 D 1 
HETATM 33 C C44 P5S . . . V 3 148.554 180.697 187.255 1 163.39 ? C44 P5S 1004 D 1 
HETATM 34 C C45 P5S . . . V 3 148.28 181.391 188.578 1 163.39 ? C45 P5S 1004 D 1 
HETATM 35 C C46 P5S . . . V 3 149.017 182.708 188.742 1 163.39 ? C46 P5S 1004 D 1 
HETATM 36 O O47 P5S . . . V 3 145.446 180.818 180.663 1 163.39 ? O47 P5S 1004 D 1 
HETATM 37 C C48 P5S . . . V 3 148.991 183.248 190.161 1 163.39 ? C48 P5S 1004 D 1 
HETATM 38 C C49 P5S . . . V 3 149.611 182.308 191.18 1 163.39 ? C49 P5S 1004 D 1 
HETATM 39 C C50 P5S . . . V 3 149.569 182.825 192.609 1 163.39 ? C50 P5S 1004 D 1 
HETATM 40 C C51 P5S . . . V 3 150.297 184.143 192.808 1 163.39 ? C51 P5S 1004 D 1 
HETATM 41 O OXT P5S . . . V 3 150.055 175.464 178.101 1 163.39 ? OXT P5S 1004 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           233 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           41 
#