data_6SPU # _model_server_result.job_id u0s2tXEwW9SADLSCT4QRNA _model_server_result.datetime_utc '2024-10-30 07:30:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6spu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6SPU # _exptl.entry_id 6SPU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SPU _cell.length_a 51.477 _cell.length_b 71.639 _cell.length_c 97.731 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SPU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 141 A PHE 138 1_555 A N SEP 142 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C SEP 142 A SEP 139 1_555 A N GLU 143 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 A C TRP 199 A TRP 196 1_555 A N TPO 200 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C TPO 200 A TPO 197 1_555 A N LEU 201 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale5 A C VAL 340 A VAL 337 1_555 A N SEP 341 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C SEP 341 A SEP 338 1_555 A N ILE 342 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6SPU _atom_sites.fract_transf_matrix[1][1] 0.019426 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1 DMS DMS . C 2 DMS A 1 402 2 DMS DMS . D 2 DMS A 1 403 3 DMS DMS . E 2 DMS A 1 404 4 DMS DMS . F 3 GAB A 1 405 1 GAB 210 . G 4 HOH A 1 501 136 HOH HOH . G 4 HOH A 2 502 134 HOH HOH . G 4 HOH A 3 503 142 HOH HOH . G 4 HOH A 4 504 244 HOH HOH . G 4 HOH A 5 505 163 HOH HOH . G 4 HOH A 6 506 227 HOH HOH . G 4 HOH A 7 507 208 HOH HOH . G 4 HOH A 8 508 192 HOH HOH . G 4 HOH A 9 509 213 HOH HOH . G 4 HOH A 10 510 206 HOH HOH . G 4 HOH A 11 511 101 HOH HOH . G 4 HOH A 12 512 109 HOH HOH . G 4 HOH A 13 513 257 HOH HOH . G 4 HOH A 14 514 245 HOH HOH . G 4 HOH A 15 515 114 HOH HOH . G 4 HOH A 16 516 164 HOH HOH . G 4 HOH A 17 517 294 HOH HOH . G 4 HOH A 18 518 212 HOH HOH . G 4 HOH A 19 519 182 HOH HOH . G 4 HOH A 20 520 285 HOH HOH . G 4 HOH A 21 521 224 HOH HOH . G 4 HOH A 22 522 7 HOH HOH . G 4 HOH A 23 523 175 HOH HOH . G 4 HOH A 24 524 39 HOH HOH . G 4 HOH A 25 525 125 HOH HOH . G 4 HOH A 26 526 149 HOH HOH . G 4 HOH A 27 527 49 HOH HOH . G 4 HOH A 28 528 143 HOH HOH . G 4 HOH A 29 529 194 HOH HOH . G 4 HOH A 30 530 199 HOH HOH . G 4 HOH A 31 531 295 HOH HOH . G 4 HOH A 32 532 169 HOH HOH . G 4 HOH A 33 533 151 HOH HOH . G 4 HOH A 34 534 150 HOH HOH . G 4 HOH A 35 535 77 HOH HOH . G 4 HOH A 36 536 127 HOH HOH . G 4 HOH A 37 537 220 HOH HOH . G 4 HOH A 38 538 70 HOH HOH . G 4 HOH A 39 539 42 HOH HOH . G 4 HOH A 40 540 229 HOH HOH . G 4 HOH A 41 541 153 HOH HOH . G 4 HOH A 42 542 162 HOH HOH . G 4 HOH A 43 543 211 HOH HOH . G 4 HOH A 44 544 31 HOH HOH . G 4 HOH A 45 545 104 HOH HOH . G 4 HOH A 46 546 36 HOH HOH . G 4 HOH A 47 547 145 HOH HOH . G 4 HOH A 48 548 50 HOH HOH . G 4 HOH A 49 549 58 HOH HOH . G 4 HOH A 50 550 34 HOH HOH . G 4 HOH A 51 551 79 HOH HOH . G 4 HOH A 52 552 210 HOH HOH . G 4 HOH A 53 553 67 HOH HOH . G 4 HOH A 54 554 132 HOH HOH . G 4 HOH A 55 555 222 HOH HOH . G 4 HOH A 56 556 14 HOH HOH . G 4 HOH A 57 557 122 HOH HOH . G 4 HOH A 58 558 230 HOH HOH . G 4 HOH A 59 559 6 HOH HOH . G 4 HOH A 60 560 33 HOH HOH . G 4 HOH A 61 561 133 HOH HOH . G 4 HOH A 62 562 216 HOH HOH . G 4 HOH A 63 563 264 HOH HOH . G 4 HOH A 64 564 231 HOH HOH . G 4 HOH A 65 565 87 HOH HOH . G 4 HOH A 66 566 140 HOH HOH . G 4 HOH A 67 567 78 HOH HOH . G 4 HOH A 68 568 23 HOH HOH . G 4 HOH A 69 569 41 HOH HOH . G 4 HOH A 70 570 8 HOH HOH . G 4 HOH A 71 571 119 HOH HOH . G 4 HOH A 72 572 9 HOH HOH . G 4 HOH A 73 573 84 HOH HOH . G 4 HOH A 74 574 234 HOH HOH . G 4 HOH A 75 575 172 HOH HOH . G 4 HOH A 76 576 54 HOH HOH . G 4 HOH A 77 577 35 HOH HOH . G 4 HOH A 78 578 66 HOH HOH . G 4 HOH A 79 579 261 HOH HOH . G 4 HOH A 80 580 17 HOH HOH . G 4 HOH A 81 581 94 HOH HOH . G 4 HOH A 82 582 4 HOH HOH . G 4 HOH A 83 583 124 HOH HOH . G 4 HOH A 84 584 255 HOH HOH . G 4 HOH A 85 585 207 HOH HOH . G 4 HOH A 86 586 64 HOH HOH . G 4 HOH A 87 587 12 HOH HOH . G 4 HOH A 88 588 46 HOH HOH . G 4 HOH A 89 589 181 HOH HOH . G 4 HOH A 90 590 185 HOH HOH . G 4 HOH A 91 591 287 HOH HOH . G 4 HOH A 92 592 288 HOH HOH . G 4 HOH A 93 593 53 HOH HOH . G 4 HOH A 94 594 195 HOH HOH . G 4 HOH A 95 595 56 HOH HOH . G 4 HOH A 96 596 156 HOH HOH . G 4 HOH A 97 597 116 HOH HOH . G 4 HOH A 98 598 186 HOH HOH . G 4 HOH A 99 599 236 HOH HOH . G 4 HOH A 100 600 51 HOH HOH . G 4 HOH A 101 601 269 HOH HOH . G 4 HOH A 102 602 73 HOH HOH . G 4 HOH A 103 603 262 HOH HOH . G 4 HOH A 104 604 97 HOH HOH . G 4 HOH A 105 605 228 HOH HOH . G 4 HOH A 106 606 32 HOH HOH . G 4 HOH A 107 607 44 HOH HOH . G 4 HOH A 108 608 62 HOH HOH . G 4 HOH A 109 609 115 HOH HOH . G 4 HOH A 110 610 193 HOH HOH . G 4 HOH A 111 611 141 HOH HOH . G 4 HOH A 112 612 16 HOH HOH . G 4 HOH A 113 613 166 HOH HOH . G 4 HOH A 114 614 278 HOH HOH . G 4 HOH A 115 615 59 HOH HOH . G 4 HOH A 116 616 187 HOH HOH . G 4 HOH A 117 617 246 HOH HOH . G 4 HOH A 118 618 270 HOH HOH . G 4 HOH A 119 619 215 HOH HOH . G 4 HOH A 120 620 43 HOH HOH . G 4 HOH A 121 621 15 HOH HOH . G 4 HOH A 122 622 107 HOH HOH . G 4 HOH A 123 623 144 HOH HOH . G 4 HOH A 124 624 69 HOH HOH . G 4 HOH A 125 625 28 HOH HOH . G 4 HOH A 126 626 11 HOH HOH . G 4 HOH A 127 627 10 HOH HOH . G 4 HOH A 128 628 131 HOH HOH . G 4 HOH A 129 629 286 HOH HOH . G 4 HOH A 130 630 242 HOH HOH . G 4 HOH A 131 631 88 HOH HOH . G 4 HOH A 132 632 289 HOH HOH . G 4 HOH A 133 633 197 HOH HOH . G 4 HOH A 134 634 57 HOH HOH . G 4 HOH A 135 635 91 HOH HOH . G 4 HOH A 136 636 110 HOH HOH . G 4 HOH A 137 637 29 HOH HOH . G 4 HOH A 138 638 155 HOH HOH . G 4 HOH A 139 639 18 HOH HOH . G 4 HOH A 140 640 93 HOH HOH . G 4 HOH A 141 641 137 HOH HOH . G 4 HOH A 142 642 21 HOH HOH . G 4 HOH A 143 643 232 HOH HOH . G 4 HOH A 144 644 82 HOH HOH . G 4 HOH A 145 645 55 HOH HOH . G 4 HOH A 146 646 47 HOH HOH . G 4 HOH A 147 647 183 HOH HOH . G 4 HOH A 148 648 190 HOH HOH . G 4 HOH A 149 649 68 HOH HOH . G 4 HOH A 150 650 272 HOH HOH . G 4 HOH A 151 651 258 HOH HOH . G 4 HOH A 152 652 161 HOH HOH . G 4 HOH A 153 653 103 HOH HOH . G 4 HOH A 154 654 188 HOH HOH . G 4 HOH A 155 655 218 HOH HOH . G 4 HOH A 156 656 200 HOH HOH . G 4 HOH A 157 657 30 HOH HOH . G 4 HOH A 158 658 226 HOH HOH . G 4 HOH A 159 659 147 HOH HOH . G 4 HOH A 160 660 296 HOH HOH . G 4 HOH A 161 661 60 HOH HOH . G 4 HOH A 162 662 19 HOH HOH . G 4 HOH A 163 663 271 HOH HOH . G 4 HOH A 164 664 106 HOH HOH . G 4 HOH A 165 665 100 HOH HOH . G 4 HOH A 166 666 146 HOH HOH . G 4 HOH A 167 667 98 HOH HOH . G 4 HOH A 168 668 72 HOH HOH . G 4 HOH A 169 669 221 HOH HOH . G 4 HOH A 170 670 201 HOH HOH . G 4 HOH A 171 671 95 HOH HOH . G 4 HOH A 172 672 128 HOH HOH . G 4 HOH A 173 673 111 HOH HOH . G 4 HOH A 174 674 281 HOH HOH . G 4 HOH A 175 675 250 HOH HOH . G 4 HOH A 176 676 139 HOH HOH . G 4 HOH A 177 677 251 HOH HOH . G 4 HOH A 178 678 92 HOH HOH . G 4 HOH A 179 679 239 HOH HOH . G 4 HOH A 180 680 235 HOH HOH . G 4 HOH A 181 681 27 HOH HOH . G 4 HOH A 182 682 184 HOH HOH . G 4 HOH A 183 683 284 HOH HOH . G 4 HOH A 184 684 90 HOH HOH . G 4 HOH A 185 685 203 HOH HOH . G 4 HOH A 186 686 280 HOH HOH . G 4 HOH A 187 687 130 HOH HOH . G 4 HOH A 188 688 86 HOH HOH . G 4 HOH A 189 689 180 HOH HOH . G 4 HOH A 190 690 253 HOH HOH . G 4 HOH A 191 691 268 HOH HOH . G 4 HOH A 192 692 65 HOH HOH . G 4 HOH A 193 693 266 HOH HOH . G 4 HOH A 194 694 290 HOH HOH . G 4 HOH A 195 695 52 HOH HOH . G 4 HOH A 196 696 40 HOH HOH . G 4 HOH A 197 697 254 HOH HOH . G 4 HOH A 198 698 237 HOH HOH . G 4 HOH A 199 699 24 HOH HOH . G 4 HOH A 200 700 247 HOH HOH . G 4 HOH A 201 701 171 HOH HOH . G 4 HOH A 202 702 20 HOH HOH . G 4 HOH A 203 703 300 HOH HOH . G 4 HOH A 204 704 168 HOH HOH . G 4 HOH A 205 705 126 HOH HOH . G 4 HOH A 206 706 198 HOH HOH . G 4 HOH A 207 707 249 HOH HOH . G 4 HOH A 208 708 297 HOH HOH . G 4 HOH A 209 709 112 HOH HOH . G 4 HOH A 210 710 154 HOH HOH . G 4 HOH A 211 711 48 HOH HOH . G 4 HOH A 212 712 37 HOH HOH . G 4 HOH A 213 713 26 HOH HOH . G 4 HOH A 214 714 205 HOH HOH . G 4 HOH A 215 715 178 HOH HOH . G 4 HOH A 216 716 45 HOH HOH . G 4 HOH A 217 717 89 HOH HOH . G 4 HOH A 218 718 22 HOH HOH . G 4 HOH A 219 719 38 HOH HOH . G 4 HOH A 220 720 118 HOH HOH . G 4 HOH A 221 721 13 HOH HOH . G 4 HOH A 222 722 283 HOH HOH . G 4 HOH A 223 723 282 HOH HOH . G 4 HOH A 224 724 129 HOH HOH . G 4 HOH A 225 725 76 HOH HOH . G 4 HOH A 226 726 117 HOH HOH . G 4 HOH A 227 727 99 HOH HOH . G 4 HOH A 228 728 167 HOH HOH . G 4 HOH A 229 729 148 HOH HOH . G 4 HOH A 230 730 299 HOH HOH . G 4 HOH A 231 731 279 HOH HOH . G 4 HOH A 232 732 265 HOH HOH . G 4 HOH A 233 733 123 HOH HOH . G 4 HOH A 234 734 292 HOH HOH . G 4 HOH A 235 735 120 HOH HOH . G 4 HOH A 236 736 102 HOH HOH . G 4 HOH A 237 737 196 HOH HOH . G 4 HOH A 238 738 85 HOH HOH . G 4 HOH A 239 739 223 HOH HOH . G 4 HOH A 240 740 273 HOH HOH . G 4 HOH A 241 741 219 HOH HOH . G 4 HOH A 242 742 291 HOH HOH . G 4 HOH A 243 743 108 HOH HOH . G 4 HOH A 244 744 179 HOH HOH . G 4 HOH A 245 745 241 HOH HOH . G 4 HOH A 246 746 252 HOH HOH . G 4 HOH A 247 747 298 HOH HOH . G 4 HOH A 248 748 248 HOH HOH . G 4 HOH A 249 749 267 HOH HOH . G 4 HOH A 250 750 240 HOH HOH . G 4 HOH A 251 751 121 HOH HOH . G 4 HOH A 252 752 165 HOH HOH . G 4 HOH A 253 753 293 HOH HOH . G 4 HOH A 254 754 173 HOH HOH . G 4 HOH A 255 755 217 HOH HOH . G 4 HOH A 256 756 256 HOH HOH . G 4 HOH A 257 757 202 HOH HOH . G 4 HOH A 258 758 225 HOH HOH . G 4 HOH A 259 759 263 HOH HOH . G 4 HOH A 260 760 259 HOH HOH . G 4 HOH A 261 761 74 HOH HOH . G 4 HOH A 262 762 243 HOH HOH . G 4 HOH A 263 763 174 HOH HOH . G 4 HOH A 264 764 191 HOH HOH . G 4 HOH A 265 765 233 HOH HOH . G 4 HOH A 266 766 81 HOH HOH . G 4 HOH A 267 767 189 HOH HOH . G 4 HOH A 268 768 177 HOH HOH . G 4 HOH A 269 769 274 HOH HOH . G 4 HOH A 270 770 152 HOH HOH . G 4 HOH A 271 771 276 HOH HOH . G 4 HOH A 272 772 260 HOH HOH . G 4 HOH A 273 773 277 HOH HOH . G 4 HOH A 274 774 214 HOH HOH . G 4 HOH A 275 775 135 HOH HOH . G 4 HOH A 276 776 176 HOH HOH . G 4 HOH A 277 777 275 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 2 -2.087 -8.637 36.616 1 65.1 ? S DMS 403 A 1 HETATM 2 O O DMS . . . D 2 -0.989 -8.003 37.411 1 51.26 ? O DMS 403 A 1 HETATM 3 C C1 DMS . . . D 2 -3.676 -8.404 37.461 1 58.87 ? C1 DMS 403 A 1 HETATM 4 C C2 DMS . . . D 2 -2.39 -7.692 35.096 1 46.57 ? C2 DMS 403 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #