data_6SQ3 # _model_server_result.job_id qh5CMyqsgbMnPeUa8sQO_g _model_server_result.datetime_utc '2024-11-14 20:45:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sq3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 6SQ3 # _exptl.entry_id 6SQ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.331 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[[2-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]ethylamino]-azanyl-methylidene]azanium' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.3 _cell.angle_gamma 90 _cell.entry_id 6SQ3 _cell.length_a 41.526 _cell.length_b 117.979 _cell.length_c 71.945 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SQ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C12 H19 N8 O3 1' _chem_comp.formula_weight 323.331 _chem_comp.id 6RE _chem_comp.mon_nstd_flag . _chem_comp.name '[[2-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]ethylamino]-azanyl-methylidene]azanium' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N6 C6 6RE sing 1 n n C6 C5 6RE doub 2 n y C6 N1 6RE sing 3 n y N7 C5 6RE sing 4 n y N7 C8 6RE doub 5 n y C5 C4 6RE sing 6 n y N1 C2 6RE doub 7 n y C8 N9 6RE sing 8 n y C4 N9 6RE sing 9 n y C4 N3 6RE doub 10 n y C2 N3 6RE sing 11 n y N9 C1' 6RE sing 12 n n N9' C8' 6RE doub 13 n n C8' N7' 6RE sing 14 n n C8' N10 6RE sing 15 n n C1' C2' 6RE sing 16 n n C1' O4' 6RE sing 17 n n C2' O2' 6RE sing 18 n n C2' C3' 6RE sing 19 n n C5' C6' 6RE sing 20 n n C5' C4' 6RE sing 21 n n N7' C6' 6RE sing 22 n n O4' C4' 6RE sing 23 n n C4' C3' 6RE sing 24 n n C3' O3' 6RE sing 25 n n C2 H2 6RE sing 26 n n N6 HN6 6RE sing 27 n n N6 HN6A 6RE sing 28 n n C8 H8 6RE sing 29 n n C1' H1' 6RE sing 30 n n C2' H2' 6RE sing 31 n n O2' HO2' 6RE sing 32 n n C3' H3' 6RE sing 33 n n O3' HO3' 6RE sing 34 n n C4' H4' 6RE sing 35 n n C5' H5' 6RE sing 36 n n C5' "H5'A" 6RE sing 37 n n C6' "H6'A" 6RE sing 38 n n C6' H6' 6RE sing 39 n n N7' HN7' 6RE sing 40 n n N9' HN9' 6RE sing 41 n n N10 HN9A 6RE sing 42 n n N10 HN9B 6RE sing 43 n n N9' HN9C 6RE sing 44 n n # _atom_sites.entry_id 6SQ3 _atom_sites.fract_transf_matrix[1][1] 0.024082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005691 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008476 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014282 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6RE A 1 401 1 6RE U1 . D 2 6RE B 1 401 2 6RE U1 . E 3 HOH A 1 501 11 HOH HOH . E 3 HOH A 2 502 8 HOH HOH . E 3 HOH A 3 503 10 HOH HOH . F 3 HOH B 1 501 2 HOH HOH . F 3 HOH B 2 502 5 HOH HOH . F 3 HOH B 3 503 7 HOH HOH . F 3 HOH B 4 504 1 HOH HOH . F 3 HOH B 5 505 9 HOH HOH . F 3 HOH B 6 506 3 HOH HOH . F 3 HOH B 7 507 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 6RE . . . D 2 9.43 1.806 116.135 1 79.44 ? N1 6RE 401 B 1 HETATM 2 C C2 6RE . . . D 2 10.232 0.884 115.593 1 77.22 ? C2 6RE 401 B 1 HETATM 3 N N3 6RE . . . D 2 11.377 1.054 114.926 1 80.64 ? N3 6RE 401 B 1 HETATM 4 C C4 6RE . . . D 2 11.691 2.352 114.836 1 85.64 ? C4 6RE 401 B 1 HETATM 5 C C5 6RE . . . D 2 10.965 3.415 115.346 1 85.63 ? C5 6RE 401 B 1 HETATM 6 C C6 6RE . . . D 2 9.773 3.109 116.027 1 80.6 ? C6 6RE 401 B 1 HETATM 7 N N6 6RE . . . D 2 8.964 4.025 116.565 1 76.17 ? N6 6RE 401 B 1 HETATM 8 N N7 6RE . . . D 2 11.597 4.621 115.063 1 88.65 ? N7 6RE 401 B 1 HETATM 9 C C8 6RE . . . D 2 12.668 4.258 114.4 1 86.8 ? C8 6RE 401 B 1 HETATM 10 N N9 6RE . . . D 2 12.79 2.905 114.226 1 85.61 ? N9 6RE 401 B 1 HETATM 11 C C1' 6RE . . . D 2 13.862 2.195 113.537 1 80.51 ? C1' 6RE 401 B 1 HETATM 12 C C2' 6RE . . . D 2 14.099 2.647 112.097 1 76.53 ? C2' 6RE 401 B 1 HETATM 13 O O2' 6RE . . . D 2 13.267 1.923 111.198 1 69.18 ? O2' 6RE 401 B 1 HETATM 14 C C3' 6RE . . . D 2 15.576 2.296 111.924 1 79.08 ? C3' 6RE 401 B 1 HETATM 15 O O3' 6RE . . . D 2 15.763 0.917 111.624 1 76.84 ? O3' 6RE 401 B 1 HETATM 16 C C4' 6RE . . . D 2 16.154 2.633 113.295 1 83.49 ? C4' 6RE 401 B 1 HETATM 17 O O4' 6RE . . . D 2 15.074 2.422 114.233 1 80.59 ? O4' 6RE 401 B 1 HETATM 18 C C5' 6RE . . . D 2 16.663 4.047 113.481 1 86.14 ? C5' 6RE 401 B 1 HETATM 19 C C6' 6RE . . . D 2 18.179 4.063 113.449 1 90.98 ? C6' 6RE 401 B 1 HETATM 20 N N7' 6RE . . . D 2 18.754 4.895 114.498 1 93.26 ? N7' 6RE 401 B 1 HETATM 21 C C8' 6RE . . . D 2 18.765 6.22 114.496 1 91.55 ? C8' 6RE 401 B 1 HETATM 22 N N9' 6RE . . . D 2 18.218 6.88 113.489 1 89.62 ? N9' 6RE 401 B 1 HETATM 23 N N10 6RE . . . D 2 19.328 6.881 115.489 1 92.12 ? N10 6RE 401 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #