data_6SQ5 # _model_server_result.job_id kpLbSDGCMrJrM0Y745M1yw _model_server_result.datetime_utc '2024-11-28 22:54:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sq5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6SQ5 # _exptl.entry_id 6SQ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6SQ5 _cell.length_a 97.533 _cell.length_b 97.533 _cell.length_c 140.229 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SQ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 48.7665 -84.466056 0 3 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.743 4 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 48.7665 -84.466056 46.743 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 259 n n PA O2A NAD sing 260 n n PA O5B NAD sing 261 n n PA O3 NAD sing 262 n n O2A HOA2 NAD sing 263 n n O5B C5B NAD sing 264 n n C5B C4B NAD sing 265 n n C5B H51A NAD sing 266 n n C5B H52A NAD sing 267 n n C4B O4B NAD sing 268 n n C4B C3B NAD sing 269 n n C4B H4B NAD sing 270 n n O4B C1B NAD sing 271 n n C3B O3B NAD sing 272 n n C3B C2B NAD sing 273 n n C3B H3B NAD sing 274 n n O3B HO3A NAD sing 275 n n C2B O2B NAD sing 276 n n C2B C1B NAD sing 277 n n C2B H2B NAD sing 278 n n O2B HO2A NAD sing 279 n n C1B N9A NAD sing 280 n n C1B H1B NAD sing 281 n n N9A C8A NAD sing 282 n y N9A C4A NAD sing 283 n y C8A N7A NAD doub 284 n y C8A H8A NAD sing 285 n n N7A C5A NAD sing 286 n y C5A C6A NAD sing 287 n y C5A C4A NAD doub 288 n y C6A N6A NAD sing 289 n n C6A N1A NAD doub 290 n y N6A H61A NAD sing 291 n n N6A H62A NAD sing 292 n n N1A C2A NAD sing 293 n y C2A N3A NAD doub 294 n y C2A H2A NAD sing 295 n n N3A C4A NAD sing 296 n y O3 PN NAD sing 297 n n PN O1N NAD doub 298 n n PN O2N NAD sing 299 n n PN O5D NAD sing 300 n n O5D C5D NAD sing 301 n n C5D C4D NAD sing 302 n n C5D H51N NAD sing 303 n n C5D H52N NAD sing 304 n n C4D O4D NAD sing 305 n n C4D C3D NAD sing 306 n n C4D H4D NAD sing 307 n n O4D C1D NAD sing 308 n n C3D O3D NAD sing 309 n n C3D C2D NAD sing 310 n n C3D H3D NAD sing 311 n n O3D HO3N NAD sing 312 n n C2D O2D NAD sing 313 n n C2D C1D NAD sing 314 n n C2D H2D NAD sing 315 n n O2D HO2N NAD sing 316 n n C1D N1N NAD sing 317 n n C1D H1D NAD sing 318 n n N1N C2N NAD sing 319 n y N1N C6N NAD doub 320 n y C2N C3N NAD doub 321 n y C2N H2N NAD sing 322 n n C3N C7N NAD sing 323 n n C3N C4N NAD sing 324 n y C7N O7N NAD doub 325 n n C7N N7N NAD sing 326 n n N7N H71N NAD sing 327 n n N7N H72N NAD sing 328 n n C4N C5N NAD doub 329 n y C4N H4N NAD sing 330 n n C5N C6N NAD sing 331 n y C5N H5N NAD sing 332 n n C6N H6N NAD sing 333 n n # _atom_sites.entry_id 6SQ5 _atom_sites.fract_transf_matrix[1][1] 0.010253 _atom_sites.fract_transf_matrix[1][2] 0.00592 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007131 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 301 NAD NAD . C 3 LRW A 1 302 401 LRW LIG . D 4 HOH A 1 401 73 HOH HOH . D 4 HOH A 2 402 68 HOH HOH . D 4 HOH A 3 403 123 HOH HOH . D 4 HOH A 4 404 90 HOH HOH . D 4 HOH A 5 405 35 HOH HOH . D 4 HOH A 6 406 46 HOH HOH . D 4 HOH A 7 407 98 HOH HOH . D 4 HOH A 8 408 106 HOH HOH . D 4 HOH A 9 409 103 HOH HOH . D 4 HOH A 10 410 115 HOH HOH . D 4 HOH A 11 411 59 HOH HOH . D 4 HOH A 12 412 112 HOH HOH . D 4 HOH A 13 413 91 HOH HOH . D 4 HOH A 14 414 116 HOH HOH . D 4 HOH A 15 415 78 HOH HOH . D 4 HOH A 16 416 86 HOH HOH . D 4 HOH A 17 417 79 HOH HOH . D 4 HOH A 18 418 62 HOH HOH . D 4 HOH A 19 419 72 HOH HOH . D 4 HOH A 20 420 13 HOH HOH . D 4 HOH A 21 421 74 HOH HOH . D 4 HOH A 22 422 12 HOH HOH . D 4 HOH A 23 423 66 HOH HOH . D 4 HOH A 24 424 8 HOH HOH . D 4 HOH A 25 425 47 HOH HOH . D 4 HOH A 26 426 17 HOH HOH . D 4 HOH A 27 427 133 HOH HOH . D 4 HOH A 28 428 10 HOH HOH . D 4 HOH A 29 429 65 HOH HOH . D 4 HOH A 30 430 31 HOH HOH . D 4 HOH A 31 431 34 HOH HOH . D 4 HOH A 32 432 23 HOH HOH . D 4 HOH A 33 433 76 HOH HOH . D 4 HOH A 34 434 55 HOH HOH . D 4 HOH A 35 435 50 HOH HOH . D 4 HOH A 36 436 99 HOH HOH . D 4 HOH A 37 437 44 HOH HOH . D 4 HOH A 38 438 132 HOH HOH . D 4 HOH A 39 439 26 HOH HOH . D 4 HOH A 40 440 19 HOH HOH . D 4 HOH A 41 441 134 HOH HOH . D 4 HOH A 42 442 9 HOH HOH . D 4 HOH A 43 443 60 HOH HOH . D 4 HOH A 44 444 3 HOH HOH . D 4 HOH A 45 445 14 HOH HOH . D 4 HOH A 46 446 63 HOH HOH . D 4 HOH A 47 447 7 HOH HOH . D 4 HOH A 48 448 111 HOH HOH . D 4 HOH A 49 449 64 HOH HOH . D 4 HOH A 50 450 33 HOH HOH . D 4 HOH A 51 451 21 HOH HOH . D 4 HOH A 52 452 11 HOH HOH . D 4 HOH A 53 453 51 HOH HOH . D 4 HOH A 54 454 75 HOH HOH . D 4 HOH A 55 455 25 HOH HOH . D 4 HOH A 56 456 29 HOH HOH . D 4 HOH A 57 457 82 HOH HOH . D 4 HOH A 58 458 24 HOH HOH . D 4 HOH A 59 459 141 HOH HOH . D 4 HOH A 60 460 28 HOH HOH . D 4 HOH A 61 461 16 HOH HOH . D 4 HOH A 62 462 77 HOH HOH . D 4 HOH A 63 463 45 HOH HOH . D 4 HOH A 64 464 2 HOH HOH . D 4 HOH A 65 465 121 HOH HOH . D 4 HOH A 66 466 37 HOH HOH . D 4 HOH A 67 467 53 HOH HOH . D 4 HOH A 68 468 52 HOH HOH . D 4 HOH A 69 469 101 HOH HOH . D 4 HOH A 70 470 39 HOH HOH . D 4 HOH A 71 471 143 HOH HOH . D 4 HOH A 72 472 97 HOH HOH . D 4 HOH A 73 473 27 HOH HOH . D 4 HOH A 74 474 20 HOH HOH . D 4 HOH A 75 475 70 HOH HOH . D 4 HOH A 76 476 30 HOH HOH . D 4 HOH A 77 477 67 HOH HOH . D 4 HOH A 78 478 41 HOH HOH . D 4 HOH A 79 479 22 HOH HOH . D 4 HOH A 80 480 124 HOH HOH . D 4 HOH A 81 481 142 HOH HOH . D 4 HOH A 82 482 5 HOH HOH . D 4 HOH A 83 483 4 HOH HOH . D 4 HOH A 84 484 80 HOH HOH . D 4 HOH A 85 485 36 HOH HOH . D 4 HOH A 86 486 40 HOH HOH . D 4 HOH A 87 487 42 HOH HOH . D 4 HOH A 88 488 1 HOH HOH . D 4 HOH A 89 489 89 HOH HOH . D 4 HOH A 90 490 84 HOH HOH . D 4 HOH A 91 491 126 HOH HOH . D 4 HOH A 92 492 32 HOH HOH . D 4 HOH A 93 493 18 HOH HOH . D 4 HOH A 94 494 109 HOH HOH . D 4 HOH A 95 495 104 HOH HOH . D 4 HOH A 96 496 48 HOH HOH . D 4 HOH A 97 497 129 HOH HOH . D 4 HOH A 98 498 15 HOH HOH . D 4 HOH A 99 499 81 HOH HOH . D 4 HOH A 100 500 43 HOH HOH . D 4 HOH A 101 501 56 HOH HOH . D 4 HOH A 102 502 131 HOH HOH . D 4 HOH A 103 503 6 HOH HOH . D 4 HOH A 104 504 130 HOH HOH . D 4 HOH A 105 505 61 HOH HOH . D 4 HOH A 106 506 107 HOH HOH . D 4 HOH A 107 507 95 HOH HOH . D 4 HOH A 108 508 57 HOH HOH . D 4 HOH A 109 509 100 HOH HOH . D 4 HOH A 110 510 71 HOH HOH . D 4 HOH A 111 511 85 HOH HOH . D 4 HOH A 112 512 88 HOH HOH . D 4 HOH A 113 513 94 HOH HOH . D 4 HOH A 114 514 49 HOH HOH . D 4 HOH A 115 515 83 HOH HOH . D 4 HOH A 116 516 119 HOH HOH . D 4 HOH A 117 517 38 HOH HOH . D 4 HOH A 118 518 92 HOH HOH . D 4 HOH A 119 519 127 HOH HOH . D 4 HOH A 120 520 93 HOH HOH . D 4 HOH A 121 521 58 HOH HOH . D 4 HOH A 122 522 137 HOH HOH . D 4 HOH A 123 523 117 HOH HOH . D 4 HOH A 124 524 96 HOH HOH . D 4 HOH A 125 525 108 HOH HOH . D 4 HOH A 126 526 128 HOH HOH . D 4 HOH A 127 527 125 HOH HOH . D 4 HOH A 128 528 139 HOH HOH . D 4 HOH A 129 529 114 HOH HOH . D 4 HOH A 130 530 135 HOH HOH . D 4 HOH A 131 531 54 HOH HOH . D 4 HOH A 132 532 69 HOH HOH . D 4 HOH A 133 533 120 HOH HOH . D 4 HOH A 134 534 105 HOH HOH . D 4 HOH A 135 535 136 HOH HOH . D 4 HOH A 136 536 110 HOH HOH . D 4 HOH A 137 537 87 HOH HOH . D 4 HOH A 138 538 140 HOH HOH . D 4 HOH A 139 539 122 HOH HOH . D 4 HOH A 140 540 113 HOH HOH . D 4 HOH A 141 541 102 HOH HOH . D 4 HOH A 142 542 138 HOH HOH . D 4 HOH A 143 543 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 0.638 -33.213 11.268 1 38.7 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . B 2 0.739 -32.032 10.602 1 37.85 -1 O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . B 2 -0.305 -34.131 10.762 1 41.78 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . B 2 0.315 -33.008 12.862 1 39.31 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . B 2 0.639 -31.857 13.496 1 43.23 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . B 2 -0.256 -31.558 14.437 1 37.85 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . B 2 0.211 -30.455 15.353 1 40.4 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . B 2 -1.57 -30.936 13.787 1 36.53 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . B 2 -2.686 -31.726 14.252 1 35.19 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . B 2 -1.535 -29.76 14.147 1 43.61 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . B 2 -2.82 -29.11 14.28 1 41.31 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . B 2 -0.787 -29.797 15.643 1 41.69 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . B 2 -0.57 -28.491 16.157 1 35.21 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . B 2 0.094 -27.526 15.643 1 35.47 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . B 2 0.057 -26.455 16.371 1 36.39 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . B 2 -0.669 -26.728 17.414 1 36.63 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . B 2 -1.097 -26.045 18.545 1 40.06 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . B 2 -0.737 -24.667 18.786 1 41.22 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . B 2 -1.839 -26.663 19.401 1 40.39 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . B 2 -2.202 -27.882 19.21 1 38.94 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . B 2 -1.828 -28.545 18.166 1 40.31 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . B 2 -1.064 -28.005 17.269 1 34.52 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . B 2 2.022 -33.96 11.137 1 38.79 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . B 2 2.494 -35.229 11.906 1 36.29 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . B 2 3.53 -35.759 11.188 1 41.08 -1 O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . B 2 1.593 -36.204 12.038 1 34.22 ? O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . B 2 3.071 -34.727 13.268 1 35.98 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . B 2 2.81 -35.291 14.519 1 35.41 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . B 2 4.067 -35.346 15.406 1 34.27 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . B 2 4.977 -36.529 14.877 1 34.6 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . B 2 4.799 -34.291 15.38 1 32.7 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . B 2 5.352 -34.082 16.705 1 35.29 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . B 2 5.923 -34.618 14.436 1 32.91 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . B 2 7.032 -33.901 14.686 1 33.76 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . B 2 6.114 -36.091 14.773 1 35.55 ? C1D NAD 301 A 1 HETATM 36 N N1N NAD . . . B 2 6.863 -36.828 13.781 1 36.55 ? N1N NAD 301 A 1 HETATM 37 C C2N NAD . . . B 2 6.619 -36.764 12.476 1 32.27 ? C2N NAD 301 A 1 HETATM 38 C C3N NAD . . . B 2 7.357 -37.491 11.598 1 34.57 ? C3N NAD 301 A 1 HETATM 39 C C7N NAD . . . B 2 7.105 -37.445 10.111 1 37.87 ? C7N NAD 301 A 1 HETATM 40 O O7N NAD . . . B 2 7.828 -37.785 9.378 1 36.34 ? O7N NAD 301 A 1 HETATM 41 N N7N NAD . . . B 2 5.889 -36.983 9.687 1 36.65 ? N7N NAD 301 A 1 HETATM 42 C C4N NAD . . . B 2 8.353 -38.281 12.083 1 36.66 ? C4N NAD 301 A 1 HETATM 43 C C5N NAD . . . B 2 8.551 -38.32 13.452 1 32.86 ? C5N NAD 301 A 1 HETATM 44 C C6N NAD . . . B 2 7.769 -37.58 14.239 1 34.89 ? C6N NAD 301 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 370 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #