data_6SQD # _model_server_result.job_id C4HPRJGBWO40EL8ZV_PWBA _model_server_result.datetime_utc '2024-11-25 10:58:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6SQD # _exptl.entry_id 6SQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6SQD _cell.length_a 97.605 _cell.length_b 97.605 _cell.length_c 139.455 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 48.8025 -84.52841 0 3 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.485 4 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 48.8025 -84.52841 46.485 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 260 n n PA O2A NAD sing 261 n n PA O5B NAD sing 262 n n PA O3 NAD sing 263 n n O2A HOA2 NAD sing 264 n n O5B C5B NAD sing 265 n n C5B C4B NAD sing 266 n n C5B H51A NAD sing 267 n n C5B H52A NAD sing 268 n n C4B O4B NAD sing 269 n n C4B C3B NAD sing 270 n n C4B H4B NAD sing 271 n n O4B C1B NAD sing 272 n n C3B O3B NAD sing 273 n n C3B C2B NAD sing 274 n n C3B H3B NAD sing 275 n n O3B HO3A NAD sing 276 n n C2B O2B NAD sing 277 n n C2B C1B NAD sing 278 n n C2B H2B NAD sing 279 n n O2B HO2A NAD sing 280 n n C1B N9A NAD sing 281 n n C1B H1B NAD sing 282 n n N9A C8A NAD sing 283 n y N9A C4A NAD sing 284 n y C8A N7A NAD doub 285 n y C8A H8A NAD sing 286 n n N7A C5A NAD sing 287 n y C5A C6A NAD sing 288 n y C5A C4A NAD doub 289 n y C6A N6A NAD sing 290 n n C6A N1A NAD doub 291 n y N6A H61A NAD sing 292 n n N6A H62A NAD sing 293 n n N1A C2A NAD sing 294 n y C2A N3A NAD doub 295 n y C2A H2A NAD sing 296 n n N3A C4A NAD sing 297 n y O3 PN NAD sing 298 n n PN O1N NAD doub 299 n n PN O2N NAD sing 300 n n PN O5D NAD sing 301 n n O5D C5D NAD sing 302 n n C5D C4D NAD sing 303 n n C5D H51N NAD sing 304 n n C5D H52N NAD sing 305 n n C4D O4D NAD sing 306 n n C4D C3D NAD sing 307 n n C4D H4D NAD sing 308 n n O4D C1D NAD sing 309 n n C3D O3D NAD sing 310 n n C3D C2D NAD sing 311 n n C3D H3D NAD sing 312 n n O3D HO3N NAD sing 313 n n C2D O2D NAD sing 314 n n C2D C1D NAD sing 315 n n C2D H2D NAD sing 316 n n O2D HO2N NAD sing 317 n n C1D N1N NAD sing 318 n n C1D H1D NAD sing 319 n n N1N C2N NAD sing 320 n y N1N C6N NAD doub 321 n y C2N C3N NAD doub 322 n y C2N H2N NAD sing 323 n n C3N C7N NAD sing 324 n n C3N C4N NAD sing 325 n y C7N O7N NAD doub 326 n n C7N N7N NAD sing 327 n n N7N H71N NAD sing 328 n n N7N H72N NAD sing 329 n n C4N C5N NAD doub 330 n y C4N H4N NAD sing 331 n n C5N C6N NAD sing 332 n y C5N H5N NAD sing 333 n n C6N H6N NAD sing 334 n n # _atom_sites.entry_id 6SQD _atom_sites.fract_transf_matrix[1][1] 0.010245 _atom_sites.fract_transf_matrix[1][2] 0.005915 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01183 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 301 NAD NAD . C 3 LT8 A 1 302 401 LT8 LIG . D 4 HOH A 1 401 158 HOH HOH . D 4 HOH A 2 402 155 HOH HOH . D 4 HOH A 3 403 102 HOH HOH . D 4 HOH A 4 404 92 HOH HOH . D 4 HOH A 5 405 129 HOH HOH . D 4 HOH A 6 406 94 HOH HOH . D 4 HOH A 7 407 23 HOH HOH . D 4 HOH A 8 408 27 HOH HOH . D 4 HOH A 9 409 95 HOH HOH . D 4 HOH A 10 410 103 HOH HOH . D 4 HOH A 11 411 132 HOH HOH . D 4 HOH A 12 412 83 HOH HOH . D 4 HOH A 13 413 113 HOH HOH . D 4 HOH A 14 414 42 HOH HOH . D 4 HOH A 15 415 48 HOH HOH . D 4 HOH A 16 416 76 HOH HOH . D 4 HOH A 17 417 121 HOH HOH . D 4 HOH A 18 418 135 HOH HOH . D 4 HOH A 19 419 151 HOH HOH . D 4 HOH A 20 420 149 HOH HOH . D 4 HOH A 21 421 30 HOH HOH . D 4 HOH A 22 422 99 HOH HOH . D 4 HOH A 23 423 36 HOH HOH . D 4 HOH A 24 424 70 HOH HOH . D 4 HOH A 25 425 16 HOH HOH . D 4 HOH A 26 426 52 HOH HOH . D 4 HOH A 27 427 90 HOH HOH . D 4 HOH A 28 428 49 HOH HOH . D 4 HOH A 29 429 39 HOH HOH . D 4 HOH A 30 430 87 HOH HOH . D 4 HOH A 31 431 6 HOH HOH . D 4 HOH A 32 432 12 HOH HOH . D 4 HOH A 33 433 82 HOH HOH . D 4 HOH A 34 434 10 HOH HOH . D 4 HOH A 35 435 38 HOH HOH . D 4 HOH A 36 436 34 HOH HOH . D 4 HOH A 37 437 55 HOH HOH . D 4 HOH A 38 438 65 HOH HOH . D 4 HOH A 39 439 19 HOH HOH . D 4 HOH A 40 440 8 HOH HOH . D 4 HOH A 41 441 66 HOH HOH . D 4 HOH A 42 442 26 HOH HOH . D 4 HOH A 43 443 157 HOH HOH . D 4 HOH A 44 444 58 HOH HOH . D 4 HOH A 45 445 84 HOH HOH . D 4 HOH A 46 446 89 HOH HOH . D 4 HOH A 47 447 11 HOH HOH . D 4 HOH A 48 448 91 HOH HOH . D 4 HOH A 49 449 20 HOH HOH . D 4 HOH A 50 450 56 HOH HOH . D 4 HOH A 51 451 24 HOH HOH . D 4 HOH A 52 452 17 HOH HOH . D 4 HOH A 53 453 60 HOH HOH . D 4 HOH A 54 454 21 HOH HOH . D 4 HOH A 55 455 4 HOH HOH . D 4 HOH A 56 456 14 HOH HOH . D 4 HOH A 57 457 45 HOH HOH . D 4 HOH A 58 458 37 HOH HOH . D 4 HOH A 59 459 114 HOH HOH . D 4 HOH A 60 460 101 HOH HOH . D 4 HOH A 61 461 78 HOH HOH . D 4 HOH A 62 462 81 HOH HOH . D 4 HOH A 63 463 74 HOH HOH . D 4 HOH A 64 464 3 HOH HOH . D 4 HOH A 65 465 40 HOH HOH . D 4 HOH A 66 466 43 HOH HOH . D 4 HOH A 67 467 13 HOH HOH . D 4 HOH A 68 468 2 HOH HOH . D 4 HOH A 69 469 35 HOH HOH . D 4 HOH A 70 470 170 HOH HOH . D 4 HOH A 71 471 79 HOH HOH . D 4 HOH A 72 472 31 HOH HOH . D 4 HOH A 73 473 25 HOH HOH . D 4 HOH A 74 474 86 HOH HOH . D 4 HOH A 75 475 9 HOH HOH . D 4 HOH A 76 476 62 HOH HOH . D 4 HOH A 77 477 112 HOH HOH . D 4 HOH A 78 478 96 HOH HOH . D 4 HOH A 79 479 22 HOH HOH . D 4 HOH A 80 480 32 HOH HOH . D 4 HOH A 81 481 97 HOH HOH . D 4 HOH A 82 482 116 HOH HOH . D 4 HOH A 83 483 100 HOH HOH . D 4 HOH A 84 484 1 HOH HOH . D 4 HOH A 85 485 33 HOH HOH . D 4 HOH A 86 486 47 HOH HOH . D 4 HOH A 87 487 28 HOH HOH . D 4 HOH A 88 488 126 HOH HOH . D 4 HOH A 89 489 137 HOH HOH . D 4 HOH A 90 490 166 HOH HOH . D 4 HOH A 91 491 5 HOH HOH . D 4 HOH A 92 492 67 HOH HOH . D 4 HOH A 93 493 59 HOH HOH . D 4 HOH A 94 494 68 HOH HOH . D 4 HOH A 95 495 44 HOH HOH . D 4 HOH A 96 496 29 HOH HOH . D 4 HOH A 97 497 139 HOH HOH . D 4 HOH A 98 498 46 HOH HOH . D 4 HOH A 99 499 143 HOH HOH . D 4 HOH A 100 500 105 HOH HOH . D 4 HOH A 101 501 128 HOH HOH . D 4 HOH A 102 502 7 HOH HOH . D 4 HOH A 103 503 75 HOH HOH . D 4 HOH A 104 504 18 HOH HOH . D 4 HOH A 105 505 54 HOH HOH . D 4 HOH A 106 506 63 HOH HOH . D 4 HOH A 107 507 152 HOH HOH . D 4 HOH A 108 508 93 HOH HOH . D 4 HOH A 109 509 51 HOH HOH . D 4 HOH A 110 510 147 HOH HOH . D 4 HOH A 111 511 53 HOH HOH . D 4 HOH A 112 512 64 HOH HOH . D 4 HOH A 113 513 104 HOH HOH . D 4 HOH A 114 514 138 HOH HOH . D 4 HOH A 115 515 164 HOH HOH . D 4 HOH A 116 516 15 HOH HOH . D 4 HOH A 117 517 61 HOH HOH . D 4 HOH A 118 518 109 HOH HOH . D 4 HOH A 119 519 167 HOH HOH . D 4 HOH A 120 520 156 HOH HOH . D 4 HOH A 121 521 41 HOH HOH . D 4 HOH A 122 522 134 HOH HOH . D 4 HOH A 123 523 165 HOH HOH . D 4 HOH A 124 524 153 HOH HOH . D 4 HOH A 125 525 85 HOH HOH . D 4 HOH A 126 526 69 HOH HOH . D 4 HOH A 127 527 107 HOH HOH . D 4 HOH A 128 528 73 HOH HOH . D 4 HOH A 129 529 50 HOH HOH . D 4 HOH A 130 530 106 HOH HOH . D 4 HOH A 131 531 57 HOH HOH . D 4 HOH A 132 532 80 HOH HOH . D 4 HOH A 133 533 133 HOH HOH . D 4 HOH A 134 534 145 HOH HOH . D 4 HOH A 135 535 130 HOH HOH . D 4 HOH A 136 536 108 HOH HOH . D 4 HOH A 137 537 77 HOH HOH . D 4 HOH A 138 538 159 HOH HOH . D 4 HOH A 139 539 160 HOH HOH . D 4 HOH A 140 540 125 HOH HOH . D 4 HOH A 141 541 127 HOH HOH . D 4 HOH A 142 542 88 HOH HOH . D 4 HOH A 143 543 168 HOH HOH . D 4 HOH A 144 544 98 HOH HOH . D 4 HOH A 145 545 111 HOH HOH . D 4 HOH A 146 546 146 HOH HOH . D 4 HOH A 147 547 150 HOH HOH . D 4 HOH A 148 548 71 HOH HOH . D 4 HOH A 149 549 72 HOH HOH . D 4 HOH A 150 550 163 HOH HOH . D 4 HOH A 151 551 136 HOH HOH . D 4 HOH A 152 552 117 HOH HOH . D 4 HOH A 153 553 161 HOH HOH . D 4 HOH A 154 554 118 HOH HOH . D 4 HOH A 155 555 131 HOH HOH . D 4 HOH A 156 556 142 HOH HOH . D 4 HOH A 157 557 154 HOH HOH . D 4 HOH A 158 558 110 HOH HOH . D 4 HOH A 159 559 115 HOH HOH . D 4 HOH A 160 560 169 HOH HOH . D 4 HOH A 161 561 123 HOH HOH . D 4 HOH A 162 562 119 HOH HOH . D 4 HOH A 163 563 124 HOH HOH . D 4 HOH A 164 564 141 HOH HOH . D 4 HOH A 165 565 120 HOH HOH . D 4 HOH A 166 566 140 HOH HOH . D 4 HOH A 167 567 122 HOH HOH . D 4 HOH A 168 568 144 HOH HOH . D 4 HOH A 169 569 148 HOH HOH . D 4 HOH A 170 570 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 28.48 -17.192 35.482 1 33.71 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . B 2 27.262 -16.683 36.179 1 33.76 -1 O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . B 2 29.842 -16.793 36.05 1 33.38 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . B 2 28.466 -16.772 33.843 1 32.61 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . B 2 27.256 -16.624 33.181 1 35.41 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . B 2 27.45 -15.678 32.238 1 32.86 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . B 2 26.238 -15.565 31.293 1 32.74 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . B 2 27.526 -14.219 32.921 1 30.59 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . B 2 28.757 -13.541 32.439 1 30.61 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . B 2 26.509 -13.618 32.505 1 37.9 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . B 2 26.741 -12.16 32.316 1 35.21 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . B 2 26.218 -14.316 30.994 1 33.33 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . B 2 24.964 -13.827 30.47 1 32.43 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . B 2 23.749 -13.934 31.03 1 32.75 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . B 2 22.833 -13.335 30.255 1 33.31 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . B 2 23.474 -12.81 29.175 1 33.07 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . B 2 23.081 -12.077 28.028 1 32.95 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . B 2 21.653 -11.718 27.83 1 35.71 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . B 2 24.007 -11.718 27.139 1 33.92 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . B 2 25.284 -12.037 27.307 1 30.64 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . B 2 25.699 -12.727 28.383 1 32.87 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . B 2 24.813 -13.121 29.314 1 32.69 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . B 2 28.344 -18.834 35.539 1 33.8 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . B 2 29.258 -19.921 34.739 1 31.78 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . B 2 30.703 -19.546 34.567 1 31.02 -1 O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . B 2 29.122 -21.21 35.507 1 35.26 ? O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . B 2 28.505 -20.058 33.276 1 30.03 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . B 2 29.206 -19.994 32.033 1 29.55 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . B 2 28.627 -21.149 31.177 1 27.9 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . B 2 29.228 -22.55 31.765 1 30.78 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . B 2 27.315 -21.269 31.207 1 29.93 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . B 2 26.88 -21.727 29.856 1 31.03 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . B 2 27.021 -22.424 32.172 1 29.33 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . B 2 25.788 -23.04 31.92 1 29.58 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . B 2 28.217 -23.352 31.839 1 31.16 ? C1D NAD 301 A 1 HETATM 36 N N1N NAD . . . B 2 28.466 -24.418 32.842 1 29.74 ? N1N NAD 301 A 1 HETATM 37 C C2N NAD . . . B 2 28.525 -24.144 34.179 1 29.98 ? C2N NAD 301 A 1 HETATM 38 C C3N NAD . . . B 2 28.767 -25.17 35.07 1 30.72 ? C3N NAD 301 A 1 HETATM 39 C C7N NAD . . . B 2 28.839 -24.887 36.565 1 32.23 ? C7N NAD 301 A 1 HETATM 40 O O7N NAD . . . B 2 28.714 -25.743 37.322 1 29.69 ? O7N NAD 301 A 1 HETATM 41 N N7N NAD . . . B 2 29.062 -23.555 36.986 1 29.45 ? N7N NAD 301 A 1 HETATM 42 C C4N NAD . . . B 2 28.97 -26.472 34.619 1 30.55 ? C4N NAD 301 A 1 HETATM 43 C C5N NAD . . . B 2 28.919 -26.706 33.219 1 27.09 ? C5N NAD 301 A 1 HETATM 44 C C6N NAD . . . B 2 28.663 -25.642 32.381 1 31.94 ? C6N NAD 301 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 44 #