data_6SQJ # _model_server_result.job_id YRtPyOfi3GPi8q2UQNSolg _model_server_result.datetime_utc '2025-03-05 19:37:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sqj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 6SQJ # _exptl.entry_id 6SQJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SQJ _cell.length_a 71.86 _cell.length_b 94.464 _cell.length_c 101.296 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SQJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 299 NAG 2 n C NAG 2 C 2 NAG A 300 NAG 2 n D NAG 1 D 1 NAG B 297 NAG 2 n D NAG 2 D 2 NAG B 298 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 58 A CYS 88 1_555 A SG CYS 179 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf2 A SG CYS 96 A CYS 126 1_555 A SG CYS 193 A CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf3 A SG CYS 108 A CYS 138 1_555 A SG CYS 117 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf4 B SG CYS 58 B CYS 88 1_555 B SG CYS 179 B CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? disulf ? disulf5 B SG CYS 96 B CYS 126 1_555 B SG CYS 193 B CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf6 B SG CYS 108 B CYS 138 1_555 B SG CYS 117 B CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? covale ? covale1 A ND2 ASN 23 A ASN 53 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 B ND2 ASN 23 B ASN 53 1_555 G C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 B ND2 ASN 31 B ASN 61 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale5 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? metalc ? metalc1 A OE1 GLU 212 A GLU 242 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc2 A OE2 GLU 212 A GLU 242 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc3 A OD2 ASP 231 A ASP 261 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc4 E MG MG . A MG 403 1_555 H O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc5 E MG MG . A MG 403 1_555 B OD1 ASP 231 B ASP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc6 E MG MG . A MG 403 1_555 B OD2 ASP 231 B ASP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc7 E MG MG . A MG 403 1_555 I O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc8 E MG MG . A MG 403 1_555 I O HOH . B HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc9 E MG MG . A MG 403 1_555 I O HOH . B HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc10 F MG MG . A MG 404 1_555 H O HOH . A HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc11 F MG MG . A MG 404 1_555 B OE1 GLU 212 B GLU 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc12 F MG MG . A MG 404 1_555 B OE2 GLU 212 B GLU 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc13 F MG MG . A MG 404 1_555 I O HOH . B HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc14 F MG MG . A MG 404 1_555 I O HOH . B HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6SQJ _atom_sites.fract_transf_matrix[1][1] 0.013916 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 403 1 MG MG . F 3 MG A 1 404 2 MG MG . G 4 NAG B 1 401 296 NAG NAG . H 5 HOH A 1 501 9 HOH HOH . H 5 HOH A 2 502 132 HOH HOH . H 5 HOH A 3 503 33 HOH HOH . H 5 HOH A 4 504 94 HOH HOH . H 5 HOH A 5 505 39 HOH HOH . H 5 HOH A 6 506 26 HOH HOH . H 5 HOH A 7 507 98 HOH HOH . H 5 HOH A 8 508 89 HOH HOH . H 5 HOH A 9 509 90 HOH HOH . H 5 HOH A 10 510 109 HOH HOH . H 5 HOH A 11 511 1 HOH HOH . H 5 HOH A 12 512 30 HOH HOH . H 5 HOH A 13 513 15 HOH HOH . H 5 HOH A 14 514 62 HOH HOH . H 5 HOH A 15 515 65 HOH HOH . H 5 HOH A 16 516 27 HOH HOH . H 5 HOH A 17 517 52 HOH HOH . H 5 HOH A 18 518 92 HOH HOH . H 5 HOH A 19 519 125 HOH HOH . H 5 HOH A 20 520 83 HOH HOH . H 5 HOH A 21 521 10 HOH HOH . H 5 HOH A 22 522 96 HOH HOH . H 5 HOH A 23 523 130 HOH HOH . H 5 HOH A 24 524 11 HOH HOH . H 5 HOH A 25 525 76 HOH HOH . H 5 HOH A 26 526 133 HOH HOH . H 5 HOH A 27 527 14 HOH HOH . H 5 HOH A 28 528 54 HOH HOH . H 5 HOH A 29 529 93 HOH HOH . H 5 HOH A 30 530 97 HOH HOH . H 5 HOH A 31 531 43 HOH HOH . H 5 HOH A 32 532 91 HOH HOH . H 5 HOH A 33 533 67 HOH HOH . H 5 HOH A 34 534 75 HOH HOH . H 5 HOH A 35 535 60 HOH HOH . H 5 HOH A 36 536 23 HOH HOH . H 5 HOH A 37 537 58 HOH HOH . H 5 HOH A 38 538 135 HOH HOH . H 5 HOH A 39 539 127 HOH HOH . H 5 HOH A 40 540 55 HOH HOH . H 5 HOH A 41 541 106 HOH HOH . H 5 HOH A 42 542 56 HOH HOH . H 5 HOH A 43 543 126 HOH HOH . H 5 HOH A 44 544 88 HOH HOH . H 5 HOH A 45 545 117 HOH HOH . H 5 HOH A 46 546 95 HOH HOH . H 5 HOH A 47 547 99 HOH HOH . I 5 HOH B 1 501 123 HOH HOH . I 5 HOH B 2 502 59 HOH HOH . I 5 HOH B 3 503 51 HOH HOH . I 5 HOH B 4 504 5 HOH HOH . I 5 HOH B 5 505 86 HOH HOH . I 5 HOH B 6 506 25 HOH HOH . I 5 HOH B 7 507 37 HOH HOH . I 5 HOH B 8 508 24 HOH HOH . I 5 HOH B 9 509 87 HOH HOH . I 5 HOH B 10 510 47 HOH HOH . I 5 HOH B 11 511 108 HOH HOH . I 5 HOH B 12 512 21 HOH HOH . I 5 HOH B 13 513 116 HOH HOH . I 5 HOH B 14 514 134 HOH HOH . I 5 HOH B 15 515 103 HOH HOH . I 5 HOH B 16 516 120 HOH HOH . I 5 HOH B 17 517 2 HOH HOH . I 5 HOH B 18 518 29 HOH HOH . I 5 HOH B 19 519 8 HOH HOH . I 5 HOH B 20 520 6 HOH HOH . I 5 HOH B 21 521 45 HOH HOH . I 5 HOH B 22 522 22 HOH HOH . I 5 HOH B 23 523 28 HOH HOH . I 5 HOH B 24 524 72 HOH HOH . I 5 HOH B 25 525 77 HOH HOH . I 5 HOH B 26 526 13 HOH HOH . I 5 HOH B 27 527 7 HOH HOH . I 5 HOH B 28 528 66 HOH HOH . I 5 HOH B 29 529 46 HOH HOH . I 5 HOH B 30 530 34 HOH HOH . I 5 HOH B 31 531 100 HOH HOH . I 5 HOH B 32 532 18 HOH HOH . I 5 HOH B 33 533 12 HOH HOH . I 5 HOH B 34 534 3 HOH HOH . I 5 HOH B 35 535 35 HOH HOH . I 5 HOH B 36 536 36 HOH HOH . I 5 HOH B 37 537 119 HOH HOH . I 5 HOH B 38 538 41 HOH HOH . I 5 HOH B 39 539 4 HOH HOH . I 5 HOH B 40 540 68 HOH HOH . I 5 HOH B 41 541 31 HOH HOH . I 5 HOH B 42 542 63 HOH HOH . I 5 HOH B 43 543 40 HOH HOH . I 5 HOH B 44 544 128 HOH HOH . I 5 HOH B 45 545 38 HOH HOH . I 5 HOH B 46 546 114 HOH HOH . I 5 HOH B 47 547 122 HOH HOH . I 5 HOH B 48 548 17 HOH HOH . I 5 HOH B 49 549 85 HOH HOH . I 5 HOH B 50 550 81 HOH HOH . I 5 HOH B 51 551 20 HOH HOH . I 5 HOH B 52 552 121 HOH HOH . I 5 HOH B 53 553 19 HOH HOH . I 5 HOH B 54 554 70 HOH HOH . I 5 HOH B 55 555 50 HOH HOH . I 5 HOH B 56 556 115 HOH HOH . I 5 HOH B 57 557 118 HOH HOH . I 5 HOH B 58 558 32 HOH HOH . I 5 HOH B 59 559 113 HOH HOH . I 5 HOH B 60 560 80 HOH HOH . I 5 HOH B 61 561 129 HOH HOH . I 5 HOH B 62 562 48 HOH HOH . I 5 HOH B 63 563 44 HOH HOH . I 5 HOH B 64 564 49 HOH HOH . I 5 HOH B 65 565 64 HOH HOH . I 5 HOH B 66 566 111 HOH HOH . I 5 HOH B 67 567 16 HOH HOH . I 5 HOH B 68 568 74 HOH HOH . I 5 HOH B 69 569 78 HOH HOH . I 5 HOH B 70 570 112 HOH HOH . I 5 HOH B 71 571 131 HOH HOH . I 5 HOH B 72 572 61 HOH HOH . I 5 HOH B 73 573 69 HOH HOH . I 5 HOH B 74 574 110 HOH HOH . I 5 HOH B 75 575 73 HOH HOH . I 5 HOH B 76 576 107 HOH HOH . I 5 HOH B 77 577 42 HOH HOH . I 5 HOH B 78 578 82 HOH HOH . I 5 HOH B 79 579 105 HOH HOH . I 5 HOH B 80 580 53 HOH HOH . I 5 HOH B 81 581 57 HOH HOH . I 5 HOH B 82 582 101 HOH HOH . I 5 HOH B 83 583 104 HOH HOH . I 5 HOH B 84 584 84 HOH HOH . I 5 HOH B 85 585 102 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 16.42 _atom_site.Cartn_y 30.126 _atom_site.Cartn_z 46.723 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 84.26 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 404 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #