data_6SQL # _model_server_result.job_id xsGhE4DfrNo-HZt-Zzd54Q _model_server_result.datetime_utc '2024-11-25 10:48:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sql # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6SQL # _exptl.entry_id 6SQL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6SQL _cell.length_a 97.931 _cell.length_b 97.931 _cell.length_c 139.954 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SQL _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -97.931 0 0 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 11_455 -x+y-1,y,-z -1 0 0 0 1 0 0 0 -1 -97.931 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 277 n n PA O2A NAD sing 278 n n PA O5B NAD sing 279 n n PA O3 NAD sing 280 n n O2A HOA2 NAD sing 281 n n O5B C5B NAD sing 282 n n C5B C4B NAD sing 283 n n C5B H51A NAD sing 284 n n C5B H52A NAD sing 285 n n C4B O4B NAD sing 286 n n C4B C3B NAD sing 287 n n C4B H4B NAD sing 288 n n O4B C1B NAD sing 289 n n C3B O3B NAD sing 290 n n C3B C2B NAD sing 291 n n C3B H3B NAD sing 292 n n O3B HO3A NAD sing 293 n n C2B O2B NAD sing 294 n n C2B C1B NAD sing 295 n n C2B H2B NAD sing 296 n n O2B HO2A NAD sing 297 n n C1B N9A NAD sing 298 n n C1B H1B NAD sing 299 n n N9A C8A NAD sing 300 n y N9A C4A NAD sing 301 n y C8A N7A NAD doub 302 n y C8A H8A NAD sing 303 n n N7A C5A NAD sing 304 n y C5A C6A NAD sing 305 n y C5A C4A NAD doub 306 n y C6A N6A NAD sing 307 n n C6A N1A NAD doub 308 n y N6A H61A NAD sing 309 n n N6A H62A NAD sing 310 n n N1A C2A NAD sing 311 n y C2A N3A NAD doub 312 n y C2A H2A NAD sing 313 n n N3A C4A NAD sing 314 n y O3 PN NAD sing 315 n n PN O1N NAD doub 316 n n PN O2N NAD sing 317 n n PN O5D NAD sing 318 n n O5D C5D NAD sing 319 n n C5D C4D NAD sing 320 n n C5D H51N NAD sing 321 n n C5D H52N NAD sing 322 n n C4D O4D NAD sing 323 n n C4D C3D NAD sing 324 n n C4D H4D NAD sing 325 n n O4D C1D NAD sing 326 n n C3D O3D NAD sing 327 n n C3D C2D NAD sing 328 n n C3D H3D NAD sing 329 n n O3D HO3N NAD sing 330 n n C2D O2D NAD sing 331 n n C2D C1D NAD sing 332 n n C2D H2D NAD sing 333 n n O2D HO2N NAD sing 334 n n C1D N1N NAD sing 335 n n C1D H1D NAD sing 336 n n N1N C2N NAD sing 337 n y N1N C6N NAD doub 338 n y C2N C3N NAD doub 339 n y C2N H2N NAD sing 340 n n C3N C7N NAD sing 341 n n C3N C4N NAD sing 342 n y C7N O7N NAD doub 343 n n C7N N7N NAD sing 344 n n N7N H71N NAD sing 345 n n N7N H72N NAD sing 346 n n C4N C5N NAD doub 347 n y C4N H4N NAD sing 348 n n C5N C6N NAD sing 349 n y C5N H5N NAD sing 350 n n C6N H6N NAD sing 351 n n # _atom_sites.entry_id 6SQL _atom_sites.fract_transf_matrix[1][1] 0.010211 _atom_sites.fract_transf_matrix[1][2] 0.005895 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011791 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007145 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 1 NAD NAD . C 3 LTK A 1 302 1 LTK LIG . D 4 HOH A 1 401 14 HOH HOH . D 4 HOH A 2 402 123 HOH HOH . D 4 HOH A 3 403 112 HOH HOH . D 4 HOH A 4 404 82 HOH HOH . D 4 HOH A 5 405 50 HOH HOH . D 4 HOH A 6 406 92 HOH HOH . D 4 HOH A 7 407 78 HOH HOH . D 4 HOH A 8 408 34 HOH HOH . D 4 HOH A 9 409 87 HOH HOH . D 4 HOH A 10 410 74 HOH HOH . D 4 HOH A 11 411 60 HOH HOH . D 4 HOH A 12 412 28 HOH HOH . D 4 HOH A 13 413 99 HOH HOH . D 4 HOH A 14 414 31 HOH HOH . D 4 HOH A 15 415 35 HOH HOH . D 4 HOH A 16 416 38 HOH HOH . D 4 HOH A 17 417 29 HOH HOH . D 4 HOH A 18 418 6 HOH HOH . D 4 HOH A 19 419 61 HOH HOH . D 4 HOH A 20 420 39 HOH HOH . D 4 HOH A 21 421 3 HOH HOH . D 4 HOH A 22 422 20 HOH HOH . D 4 HOH A 23 423 69 HOH HOH . D 4 HOH A 24 424 107 HOH HOH . D 4 HOH A 25 425 5 HOH HOH . D 4 HOH A 26 426 64 HOH HOH . D 4 HOH A 27 427 66 HOH HOH . D 4 HOH A 28 428 56 HOH HOH . D 4 HOH A 29 429 10 HOH HOH . D 4 HOH A 30 430 27 HOH HOH . D 4 HOH A 31 431 129 HOH HOH . D 4 HOH A 32 432 53 HOH HOH . D 4 HOH A 33 433 119 HOH HOH . D 4 HOH A 34 434 100 HOH HOH . D 4 HOH A 35 435 63 HOH HOH . D 4 HOH A 36 436 57 HOH HOH . D 4 HOH A 37 437 9 HOH HOH . D 4 HOH A 38 438 58 HOH HOH . D 4 HOH A 39 439 75 HOH HOH . D 4 HOH A 40 440 19 HOH HOH . D 4 HOH A 41 441 131 HOH HOH . D 4 HOH A 42 442 22 HOH HOH . D 4 HOH A 43 443 7 HOH HOH . D 4 HOH A 44 444 54 HOH HOH . D 4 HOH A 45 445 2 HOH HOH . D 4 HOH A 46 446 8 HOH HOH . D 4 HOH A 47 447 77 HOH HOH . D 4 HOH A 48 448 24 HOH HOH . D 4 HOH A 49 449 67 HOH HOH . D 4 HOH A 50 450 1 HOH HOH . D 4 HOH A 51 451 80 HOH HOH . D 4 HOH A 52 452 68 HOH HOH . D 4 HOH A 53 453 48 HOH HOH . D 4 HOH A 54 454 13 HOH HOH . D 4 HOH A 55 455 95 HOH HOH . D 4 HOH A 56 456 94 HOH HOH . D 4 HOH A 57 457 51 HOH HOH . D 4 HOH A 58 458 4 HOH HOH . D 4 HOH A 59 459 62 HOH HOH . D 4 HOH A 60 460 36 HOH HOH . D 4 HOH A 61 461 26 HOH HOH . D 4 HOH A 62 462 16 HOH HOH . D 4 HOH A 63 463 33 HOH HOH . D 4 HOH A 64 464 12 HOH HOH . D 4 HOH A 65 465 59 HOH HOH . D 4 HOH A 66 466 133 HOH HOH . D 4 HOH A 67 467 146 HOH HOH . D 4 HOH A 68 468 15 HOH HOH . D 4 HOH A 69 469 18 HOH HOH . D 4 HOH A 70 470 104 HOH HOH . D 4 HOH A 71 471 101 HOH HOH . D 4 HOH A 72 472 71 HOH HOH . D 4 HOH A 73 473 108 HOH HOH . D 4 HOH A 74 474 17 HOH HOH . D 4 HOH A 75 475 47 HOH HOH . D 4 HOH A 76 476 44 HOH HOH . D 4 HOH A 77 477 40 HOH HOH . D 4 HOH A 78 478 72 HOH HOH . D 4 HOH A 79 479 98 HOH HOH . D 4 HOH A 80 480 23 HOH HOH . D 4 HOH A 81 481 30 HOH HOH . D 4 HOH A 82 482 21 HOH HOH . D 4 HOH A 83 483 114 HOH HOH . D 4 HOH A 84 484 132 HOH HOH . D 4 HOH A 85 485 52 HOH HOH . D 4 HOH A 86 486 49 HOH HOH . D 4 HOH A 87 487 32 HOH HOH . D 4 HOH A 88 488 11 HOH HOH . D 4 HOH A 89 489 37 HOH HOH . D 4 HOH A 90 490 55 HOH HOH . D 4 HOH A 91 491 138 HOH HOH . D 4 HOH A 92 492 135 HOH HOH . D 4 HOH A 93 493 41 HOH HOH . D 4 HOH A 94 494 103 HOH HOH . D 4 HOH A 95 495 43 HOH HOH . D 4 HOH A 96 496 45 HOH HOH . D 4 HOH A 97 497 81 HOH HOH . D 4 HOH A 98 498 109 HOH HOH . D 4 HOH A 99 499 42 HOH HOH . D 4 HOH A 100 500 142 HOH HOH . D 4 HOH A 101 501 83 HOH HOH . D 4 HOH A 102 502 25 HOH HOH . D 4 HOH A 103 503 70 HOH HOH . D 4 HOH A 104 504 122 HOH HOH . D 4 HOH A 105 505 89 HOH HOH . D 4 HOH A 106 506 137 HOH HOH . D 4 HOH A 107 507 141 HOH HOH . D 4 HOH A 108 508 105 HOH HOH . D 4 HOH A 109 509 143 HOH HOH . D 4 HOH A 110 510 79 HOH HOH . D 4 HOH A 111 511 97 HOH HOH . D 4 HOH A 112 512 102 HOH HOH . D 4 HOH A 113 513 144 HOH HOH . D 4 HOH A 114 514 93 HOH HOH . D 4 HOH A 115 515 88 HOH HOH . D 4 HOH A 116 516 106 HOH HOH . D 4 HOH A 117 517 111 HOH HOH . D 4 HOH A 118 518 46 HOH HOH . D 4 HOH A 119 519 139 HOH HOH . D 4 HOH A 120 520 128 HOH HOH . D 4 HOH A 121 521 150 HOH HOH . D 4 HOH A 122 522 115 HOH HOH . D 4 HOH A 123 523 110 HOH HOH . D 4 HOH A 124 524 120 HOH HOH . D 4 HOH A 125 525 76 HOH HOH . D 4 HOH A 126 526 134 HOH HOH . D 4 HOH A 127 527 125 HOH HOH . D 4 HOH A 128 528 130 HOH HOH . D 4 HOH A 129 529 127 HOH HOH . D 4 HOH A 130 530 149 HOH HOH . D 4 HOH A 131 531 90 HOH HOH . D 4 HOH A 132 532 147 HOH HOH . D 4 HOH A 133 533 113 HOH HOH . D 4 HOH A 134 534 96 HOH HOH . D 4 HOH A 135 535 126 HOH HOH . D 4 HOH A 136 536 136 HOH HOH . D 4 HOH A 137 537 116 HOH HOH . D 4 HOH A 138 538 85 HOH HOH . D 4 HOH A 139 539 91 HOH HOH . D 4 HOH A 140 540 73 HOH HOH . D 4 HOH A 141 541 124 HOH HOH . D 4 HOH A 142 542 151 HOH HOH . D 4 HOH A 143 543 148 HOH HOH . D 4 HOH A 144 544 121 HOH HOH . D 4 HOH A 145 545 65 HOH HOH . D 4 HOH A 146 546 86 HOH HOH . D 4 HOH A 147 547 84 HOH HOH . D 4 HOH A 148 548 140 HOH HOH . D 4 HOH A 149 549 117 HOH HOH . D 4 HOH A 150 550 118 HOH HOH . D 4 HOH A 151 551 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 -29.372 16.164 -12.281 1 30.61 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . B 2 -29.606 17.293 -12.805 1 27.17 ? O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . B 2 -28.474 15.418 -12.947 1 27.9 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . B 2 -28.965 16.399 -10.832 1 31.62 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . B 2 -28.281 15.514 -10.034 1 22.13 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . B 2 -27.288 16.193 -9.113 1 30.86 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . B 2 -26.659 15.147 -8.131 1 32.3 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . B 2 -26.322 16.812 -9.697 1 30.86 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . B 2 -26.34 18.188 -9.355 1 24.17 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . B 2 -25.089 16.136 -9.123 1 32.67 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . B 2 -24.046 16.974 -9.051 1 38.68 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . B 2 -25.547 15.612 -7.806 1 31.5 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . B 2 -24.56 14.698 -7.339 1 26.17 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . B 2 -24.102 13.623 -7.877 1 23.81 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . B 2 -23.21 13.177 -7.146 1 29.51 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . B 2 -23.093 13.985 -6.182 1 22.49 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . B 2 -22.252 13.94 -5.144 1 25.91 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . B 2 -21.275 13.109 -4.719 1 29.63 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . B 2 -22.28 14.853 -4.238 1 25.86 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . B 2 -23.141 15.859 -4.349 1 22.17 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . B 2 -23.956 15.917 -5.383 1 23.68 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . B 2 -23.93 14.942 -6.281 1 21.94 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . B 2 -30.71 15.434 -12.335 1 36.79 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . B 2 -32.005 15.521 -11.539 1 29.8 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . B 2 -32.529 16.693 -11.395 1 23.69 ? O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . B 2 -32.954 14.978 -12.215 1 36.8 ? O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . B 2 -31.765 14.811 -10.363 1 35.43 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . B 2 -32.1 15.235 -9.08 1 34.92 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . B 2 -33.019 14.382 -8.325 1 33.67 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . B 2 -34.194 14.338 -8.762 1 31.31 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . B 2 -32.451 12.821 -8.329 1 32.93 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . B 2 -32.37 12.498 -6.941 1 25.71 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . B 2 -33.226 12.214 -9.04 1 30.63 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . B 2 -33.183 10.796 -8.812 1 22.92 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . B 2 -34.628 12.926 -8.758 1 29.37 ? C1D NAD 301 A 1 HETATM 36 N N1N NAD . . . B 2 -35.56 12.653 -9.603 1 29.3 ? N1N NAD 301 A 1 HETATM 37 C C2N NAD . . . B 2 -35.449 12.852 -10.935 1 20.21 ? C2N NAD 301 A 1 HETATM 38 C C3N NAD . . . B 2 -36.459 12.588 -11.777 1 23.06 ? C3N NAD 301 A 1 HETATM 39 C C7N NAD . . . B 2 -36.375 12.796 -13.255 1 25.15 ? C7N NAD 301 A 1 HETATM 40 O O7N NAD . . . B 2 -37.044 12.302 -13.94 1 29.94 ? O7N NAD 301 A 1 HETATM 41 N N7N NAD . . . B 2 -35.484 13.607 -13.898 1 19.89 ? N7N NAD 301 A 1 HETATM 42 C C4N NAD . . . B 2 -37.59 12.086 -11.258 1 24.58 ? C4N NAD 301 A 1 HETATM 43 C C5N NAD . . . B 2 -37.687 11.89 -9.936 1 26.76 ? C5N NAD 301 A 1 HETATM 44 C C6N NAD . . . B 2 -36.651 12.171 -9.115 1 20.46 ? C6N NAD 301 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #