data_6SQU
#
_model_server_result.job_id            v0wn-8iObzkEXywCm8XtEA 
_model_server_result.datetime_utc      '2025-08-31 06:26:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6squ 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":801}' 
#
_entry.id    6SQU 
#
_exptl.entry_id    6SQU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              790.136 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5,5'-(ethane-1,2-diylbis(oxy))bis(benzene-5,4,2,1,-tetrayl)hexakisphosphate" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.75 
_cell.angle_gamma         90 
_cell.entry_id            6SQU 
_cell.length_a            44.41 
_cell.length_b            60.19 
_cell.length_c            113.96 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SQU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D 1 1 
B,C,E 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C14 H20 O26 P6' 
_chem_comp.formula_weight    790.136 
_chem_comp.id                D7I 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5,5'-(ethane-1,2-diylbis(oxy))bis(benzene-5,4,2,1,-tetrayl)hexakisphosphate" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O23 P2 D7I doub 83 n n 
O43 P4 D7I doub 84 n n 
O41 P4 D7I sing 85 n n 
P4 O4 D7I sing 86 n n 
P4 O42 D7I sing 87 n n 
P2 O21 D7I sing 88 n n 
P2 O22 D7I sing 89 n n 
P2 O2 D7I sing 90 n n 
O4 C4 D7I sing 91 n n 
C3 C4 D7I doub 92 n y 
C3 C2 D7I sing 93 n y 
O2 C2 D7I sing 94 n n 
C4 C5 D7I sing 95 n y 
C2 C1 D7I doub 96 n y 
C5 O5 D7I sing 97 n n 
C5 C6 D7I doub 98 n y 
C1 C6 D7I sing 99 n y 
C1 O1 D7I sing 100 n n 
O5 P5 D7I sing 101 n n 
O22' P2' D7I doub 102 n n 
O51 P5 D7I doub 103 n n 
C7 O1 D7I sing 104 n n 
C7 C7' D7I sing 105 n n 
O53 P5 D7I sing 106 n n 
P5 O52 D7I sing 107 n n 
C7' O1' D7I sing 108 n n 
O21' P2' D7I sing 109 n n 
P2' O2' D7I sing 110 n n 
P2' O23' D7I sing 111 n n 
O2' C2' D7I sing 112 n n 
O1' C1' D7I sing 113 n n 
C2' C1' D7I doub 114 n y 
C2' C3' D7I sing 115 n y 
C1' C6' D7I sing 116 n y 
C3' C4' D7I doub 117 n y 
O43' P4' D7I doub 118 n n 
O42' P4' D7I sing 119 n n 
C6' C5' D7I doub 120 n y 
C4' C5' D7I sing 121 n y 
C4' O4' D7I sing 122 n n 
P4' O4' D7I sing 123 n n 
P4' O41' D7I sing 124 n n 
O52' P5' D7I doub 125 n n 
C5' O5' D7I sing 126 n n 
O5' P5' D7I sing 127 n n 
P5' O53' D7I sing 128 n n 
P5' O51' D7I sing 129 n n 
C3 H3 D7I sing 130 n n 
C3' H3' D7I sing 131 n n 
C6 H6 D7I sing 132 n n 
C6' H6' D7I sing 133 n n 
C7 H71 D7I sing 134 n n 
C7 H72 D7I sing 135 n n 
C7' "H7'2" D7I sing 136 n n 
C7' "H7'1" D7I sing 137 n n 
O21 H1 D7I sing 138 n n 
O22 H2 D7I sing 139 n n 
O41 H4 D7I sing 140 n n 
O42 H5 D7I sing 141 n n 
O52 H7 D7I sing 142 n n 
O53 H8 D7I sing 143 n n 
O21' H9 D7I sing 144 n n 
O23' H10 D7I sing 145 n n 
O41' H11 D7I sing 146 n n 
O42' H12 D7I sing 147 n n 
O51' H13 D7I sing 148 n n 
O53' H14 D7I sing 149 n n 
#
_atom_sites.entry_id                     6SQU 
_atom_sites.fract_transf_matrix[1][1]    0.022517 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001082 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016614 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008785 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 D7I B 1 801 2 D7I D7I . 
D 3 HOH A 1 801 31 HOH HOH . 
D 3 HOH A 2 802 29 HOH HOH . 
D 3 HOH A 3 803 30 HOH HOH . 
D 3 HOH A 4 804 39 HOH HOH . 
D 3 HOH A 5 805 36 HOH HOH . 
D 3 HOH A 6 806 32 HOH HOH . 
D 3 HOH A 7 807 37 HOH HOH . 
D 3 HOH A 8 808 50 HOH HOH . 
D 3 HOH A 9 809 49 HOH HOH . 
D 3 HOH A 10 810 35 HOH HOH . 
D 3 HOH A 11 811 41 HOH HOH . 
D 3 HOH A 12 812 43 HOH HOH . 
D 3 HOH A 13 813 52 HOH HOH . 
E 3 HOH B 1 901 20 HOH HOH . 
E 3 HOH B 2 902 1 HOH HOH . 
E 3 HOH B 3 903 54 HOH HOH . 
E 3 HOH B 4 904 51 HOH HOH . 
E 3 HOH B 5 905 8 HOH HOH . 
E 3 HOH B 6 906 23 HOH HOH . 
E 3 HOH B 7 907 3 HOH HOH . 
E 3 HOH B 8 908 14 HOH HOH . 
E 3 HOH B 9 909 7 HOH HOH . 
E 3 HOH B 10 910 17 HOH HOH . 
E 3 HOH B 11 911 2 HOH HOH . 
E 3 HOH B 12 912 15 HOH HOH . 
E 3 HOH B 13 913 13 HOH HOH . 
E 3 HOH B 14 914 4 HOH HOH . 
E 3 HOH B 15 915 12 HOH HOH . 
E 3 HOH B 16 916 6 HOH HOH . 
E 3 HOH B 17 917 5 HOH HOH . 
E 3 HOH B 18 918 16 HOH HOH . 
E 3 HOH B 19 919 9 HOH HOH . 
E 3 HOH B 20 920 11 HOH HOH . 
E 3 HOH B 21 921 38 HOH HOH . 
E 3 HOH B 22 922 18 HOH HOH . 
E 3 HOH B 23 923 53 HOH HOH . 
E 3 HOH B 24 924 22 HOH HOH . 
E 3 HOH B 25 925 21 HOH HOH . 
E 3 HOH B 26 926 10 HOH HOH . 
E 3 HOH B 27 927 28 HOH HOH . 
E 3 HOH B 28 928 24 HOH HOH . 
E 3 HOH B 29 929 45 HOH HOH . 
E 3 HOH B 30 930 27 HOH HOH . 
E 3 HOH B 31 931 40 HOH HOH . 
E 3 HOH B 32 932 26 HOH HOH . 
E 3 HOH B 33 933 19 HOH HOH . 
E 3 HOH B 34 934 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 D7I . . . C 2 -9.167 28.484 -20.201 0.91 101.37 ? C1 D7I 801 B 1 
HETATM 2 C C1' D7I . . . C 2 -8.594 24.888 -16.892 0.91 100.76 ? C1' D7I 801 B 1 
HETATM 3 C C2 D7I . . . C 2 -8.817 28.644 -21.539 0.91 96.55 ? C2 D7I 801 B 1 
HETATM 4 C C2' D7I . . . C 2 -7.888 23.794 -17.416 0.91 92.75 ? C2' D7I 801 B 1 
HETATM 5 C C3 D7I . . . C 2 -9.727 29.234 -22.424 0.91 96.21 ? C3 D7I 801 B 1 
HETATM 6 C C3' D7I . . . C 2 -6.821 23.239 -16.687 0.91 91.33 ? C3' D7I 801 B 1 
HETATM 7 C C4 D7I . . . C 2 -10.977 29.649 -21.969 0.91 99.57 ? C4 D7I 801 B 1 
HETATM 8 C C4' D7I . . . C 2 -6.466 23.765 -15.435 0.91 92.57 ? C4' D7I 801 B 1 
HETATM 9 C C5 D7I . . . C 2 -11.323 29.472 -20.633 0.91 102.67 ? C5 D7I 801 B 1 
HETATM 10 C C5' D7I . . . C 2 -7.172 24.856 -14.909 0.91 99.66 ? C5' D7I 801 B 1 
HETATM 11 C C6 D7I . . . C 2 -10.421 28.894 -19.754 0.91 101.8 ? C6 D7I 801 B 1 
HETATM 12 C C6' D7I . . . C 2 -8.239 25.414 -15.637 0.91 101.65 ? C6' D7I 801 B 1 
HETATM 13 C C7 D7I . . . C 2 -8.19 26.445 -19.409 0.91 103.82 ? C7 D7I 801 B 1 
HETATM 14 C C7' D7I . . . C 2 -9.538 25.749 -19.031 0.91 103.57 ? C7' D7I 801 B 1 
HETATM 15 O O1 D7I . . . C 2 -8.285 27.879 -19.241 0.91 104.63 ? O1 D7I 801 B 1 
HETATM 16 O O1' D7I . . . C 2 -9.703 25.493 -17.616 0.91 102.91 ? O1' D7I 801 B 1 
HETATM 17 O O2 D7I . . . C 2 -7.546 28.239 -22.014 0.91 93.14 ? O2 D7I 801 B 1 
HETATM 18 O O2' D7I . . . C 2 -8.214 23.237 -18.679 0.91 86.21 ? O2' D7I 801 B 1 
HETATM 19 O O21 D7I . . . C 2 -6.067 26.346 -22.71 0.91 86.77 ? O21 D7I 801 B 1 
HETATM 20 O O22 D7I . . . C 2 -8.489 25.994 -22.705 0.91 96.29 ? O22 D7I 801 B 1 
HETATM 21 O O23 D7I . . . C 2 -7.452 27.429 -24.42 0.91 80.64 ? O23 D7I 801 B 1 
HETATM 22 O O4 D7I . . . C 2 -11.897 30.229 -22.857 0.91 100.05 ? O4 D7I 801 B 1 
HETATM 23 O O4' D7I . . . C 2 -5.374 23.183 -14.707 0.91 88.22 ? O4' D7I 801 B 1 
HETATM 24 O O41 D7I . . . C 2 -14.178 30.171 -23.969 0.91 102.22 ? O41 D7I 801 B 1 
HETATM 25 O O42 D7I . . . C 2 -13.709 28.564 -22.151 0.91 103.8 ? O42 D7I 801 B 1 
HETATM 26 O O43 D7I . . . C 2 -12.623 28.288 -24.358 0.91 100.15 ? O43 D7I 801 B 1 
HETATM 27 O O5 D7I . . . C 2 -12.57 29.881 -20.15 0.91 105.14 ? O5 D7I 801 B 1 
HETATM 28 O O5' D7I . . . C 2 -6.832 25.389 -13.665 0.91 108.11 ? O5' D7I 801 B 1 
HETATM 29 O O51 D7I . . . C 2 -13.68 32.099 -19.587 0.91 112.23 ? O51 D7I 801 B 1 
HETATM 30 O O52 D7I . . . C 2 -12.838 30.664 -17.743 0.91 111.38 ? O52 D7I 801 B 1 
HETATM 31 O O53 D7I . . . C 2 -11.243 31.848 -19.234 0.91 109.45 ? O53 D7I 801 B 1 
HETATM 32 P P2 D7I . . . C 2 -7.396 26.988 -22.972 0.91 87.27 ? P2 D7I 801 B 1 
HETATM 33 P P2' D7I . . . C 2 -9.537 22.355 -18.843 0.91 80.64 ? P2' D7I 801 B 1 
HETATM 34 P P4 D7I . . . C 2 -13.118 29.312 -23.343 0.91 100.97 ? P4 D7I 801 B 1 
HETATM 35 P P4' D7I . . . C 2 -3.924 23.176 -15.422 0.91 85.41 ? P4' D7I 801 B 1 
HETATM 36 P P5 D7I . . . C 2 -12.585 31.14 -19.17 0.91 110.27 ? P5 D7I 801 B 1 
HETATM 37 P P5' D7I . . . C 2 -6.191 26.851 -13.6 0.91 111.06 ? P5' D7I 801 B 1 
HETATM 38 O O21' D7I . . . C 2 -9.176 20.877 -18.949 0.91 75.1 ? O21' D7I 801 B 1 
HETATM 39 O O22' D7I . . . C 2 -10.24 22.768 -20.106 0.91 81.96 ? O22' D7I 801 B 1 
HETATM 40 O O23' D7I . . . C 2 -10.446 22.59 -17.66 0.91 86.89 ? O23' D7I 801 B 1 
HETATM 41 O O41' D7I . . . C 2 -2.877 22.706 -14.441 0.91 86.96 ? O41' D7I 801 B 1 
HETATM 42 O O42' D7I . . . C 2 -3.584 24.582 -15.889 0.91 92.44 ? O42' D7I 801 B 1 
HETATM 43 O O43' D7I . . . C 2 -3.958 22.256 -16.61 0.91 75.99 ? O43' D7I 801 B 1 
HETATM 44 O O51' D7I . . . C 2 -5.151 26.899 -12.517 0.91 112.2 ? O51' D7I 801 B 1 
HETATM 45 O O52' D7I . . . C 2 -5.558 27.187 -14.933 0.91 110.44 ? O52' D7I 801 B 1 
HETATM 46 O O53' D7I . . . C 2 -7.283 27.853 -13.293 0.91 110.54 ? O53' D7I 801 B 1 
HETATM 47 H H3 D7I . . . C 2 -9.482 29.357 -23.377 0.91 115.46 ? H3 D7I 801 B 1 
HETATM 48 H H3' D7I . . . C 2 -6.339 22.5 -17.043 0.91 109.6 ? H3' D7I 801 B 1 
HETATM 49 H H6 D7I . . . C 2 -10.663 28.775 -18.829 0.91 122.15 ? H6 D7I 801 B 1 
HETATM 50 H H6' D7I . . . C 2 -8.73 26.169 -15.274 0.91 121.98 ? H6' D7I 801 B 1 
HETATM 51 H H71 D7I . . . C 2 -7.465 26.095 -18.862 0.91 124.58 ? H71 D7I 801 B 1 
HETATM 52 H H72 D7I . . . C 2 -8.005 26.255 -20.344 0.91 124.58 ? H72 D7I 801 B 1 
HETATM 53 H "H7'2" D7I . . . C 2 -9.589 24.907 -19.501 0.91 124.28 ? "H7'2" D7I 801 B 1 
HETATM 54 H "H7'1" D7I . . . C 2 -10.271 26.325 -19.332 0.91 124.28 ? "H7'1" D7I 801 B 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           396 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           54 
#