data_6SR5 # _model_server_result.job_id tUFyVZellW6zC-HYps1SYg _model_server_result.datetime_utc '2024-11-16 15:59:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sr5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 6SR5 # _exptl.entry_id 6SR5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 404.459 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SR5 _cell.length_a 79 _cell.length_b 79 _cell.length_c 39.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SR5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 78 A SER 60 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc2 A O CYS 82 A CYS 64 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc3 A OG SER 90 A SER 72 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc4 A O ARG 91 A ARG 73 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc5 B GD GD . A GD 201 1_555 E O3 DO3 . A DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc6 B GD GD . A GD 201 1_555 E N2 DO3 . A DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc7 B GD GD . A GD 201 1_555 E N3 DO3 . A DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc8 B GD GD . A GD 201 1_555 E O5 DO3 . A DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc9 B GD GD . A GD 201 1_555 E O1 DO3 . A DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc10 B GD GD . A GD 201 1_555 E N1 DO3 . A DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc11 B GD GD . A GD 201 1_555 E N4 DO3 . A DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.007 ? metalc ? metalc12 B GD GD . A GD 201 1_555 E O7 DO3 . A DO3 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.195 ? metalc ? metalc13 C GD GD . A GD 202 1_555 D N2 DO3 . A DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc14 C GD GD . A GD 202 1_555 D N3 DO3 . A DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc15 C GD GD . A GD 202 1_555 D O3 DO3 . A DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc16 C GD GD . A GD 202 1_555 D O5 DO3 . A DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc17 C GD GD . A GD 202 1_555 D O7 DO3 . A DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc18 C GD GD . A GD 202 1_555 D N1 DO3 . A DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc19 C GD GD . A GD 202 1_555 D N4 DO3 . A DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc20 C GD GD . A GD 202 1_555 D O1 DO3 . A DO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc21 C GD GD . A GD 202 1_555 J O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? metalc ? metalc22 F NA NA . A NA 205 1_555 J O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc23 F NA NA . A NA 205 1_555 J O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? # _chem_comp.formula 'C17 H32 N4 O7' _chem_comp.formula_weight 404.459 _chem_comp.id DO3 _chem_comp.mon_nstd_flag . _chem_comp.name '10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 DO3 sing 83 n n N1 C8 DO3 sing 84 n n N1 C10 DO3 sing 85 n n N2 C2 DO3 sing 86 n n N2 C3 DO3 sing 87 n n N2 C12 DO3 sing 88 n n N3 C4 DO3 sing 89 n n N3 C5 DO3 sing 90 n n N3 C14 DO3 sing 91 n n N4 C6 DO3 sing 92 n n N4 C7 DO3 sing 93 n n N4 C16 DO3 sing 94 n n O1 C9 DO3 sing 95 n n O1 HO1 DO3 sing 96 n n O3 C11 DO3 sing 97 n n O3 HO3 DO3 sing 98 n n O5 C13 DO3 sing 99 n n O5 HO5 DO3 sing 100 n n O7 C15 DO3 sing 101 n n O7 HO7 DO3 sing 102 n n C1 C2 DO3 sing 103 n n C1 HC11 DO3 sing 104 n n C1 HC12 DO3 sing 105 n n C2 HC21 DO3 sing 106 n n C2 HC22 DO3 sing 107 n n C3 C4 DO3 sing 108 n n C3 HC31 DO3 sing 109 n n C3 HC32 DO3 sing 110 n n C4 HC41 DO3 sing 111 n n C4 HC42 DO3 sing 112 n n C5 C6 DO3 sing 113 n n C5 HC51 DO3 sing 114 n n C5 HC52 DO3 sing 115 n n C6 HC61 DO3 sing 116 n n C6 HC62 DO3 sing 117 n n C7 C8 DO3 sing 118 n n C7 HC71 DO3 sing 119 n n C7 HC72 DO3 sing 120 n n C8 HC81 DO3 sing 121 n n C8 HC82 DO3 sing 122 n n C9 C10 DO3 sing 123 n n C9 O2 DO3 doub 124 n n C10 H101 DO3 sing 125 n n C10 H102 DO3 sing 126 n n C11 C12 DO3 sing 127 n n C11 O4 DO3 doub 128 n n C12 H121 DO3 sing 129 n n C12 H122 DO3 sing 130 n n C13 C14 DO3 sing 131 n n C13 O6 DO3 doub 132 n n C14 H141 DO3 sing 133 n n C14 H142 DO3 sing 134 n n C15 C16 DO3 sing 135 n n C15 C17 DO3 sing 136 n n C15 HA DO3 sing 137 n n C16 H161 DO3 sing 138 n n C16 H162 DO3 sing 139 n n C17 H171 DO3 sing 140 n n C17 H172 DO3 sing 141 n n C17 H173 DO3 sing 142 n n # _atom_sites.entry_id 6SR5 _atom_sites.fract_transf_matrix[1][1] 0.012658 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012658 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025316 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GD A 1 201 201 GD GD . C 2 GD A 1 202 202 GD GD . D 3 DO3 A 1 203 203 DO3 DO3 . E 3 DO3 A 1 204 204 DO3 DO3 . F 4 NA A 1 205 1 NA NA . G 5 CL A 1 206 2 CL CL . H 5 CL A 1 207 3 CL CL . I 5 CL A 1 208 4 CL CL . J 6 HOH A 1 301 25 HOH HOH . J 6 HOH A 2 302 21 HOH HOH . J 6 HOH A 3 303 24 HOH HOH . J 6 HOH A 4 304 3 HOH HOH . J 6 HOH A 5 305 14 HOH HOH . J 6 HOH A 6 306 18 HOH HOH . J 6 HOH A 7 307 26 HOH HOH . J 6 HOH A 8 308 12 HOH HOH . J 6 HOH A 9 309 2 HOH HOH . J 6 HOH A 10 310 16 HOH HOH . J 6 HOH A 11 311 5 HOH HOH . J 6 HOH A 12 312 11 HOH HOH . J 6 HOH A 13 313 17 HOH HOH . J 6 HOH A 14 314 22 HOH HOH . J 6 HOH A 15 315 13 HOH HOH . J 6 HOH A 16 316 4 HOH HOH . J 6 HOH A 17 317 15 HOH HOH . J 6 HOH A 18 318 6 HOH HOH . J 6 HOH A 19 319 20 HOH HOH . J 6 HOH A 20 320 9 HOH HOH . J 6 HOH A 21 321 8 HOH HOH . J 6 HOH A 22 322 1 HOH HOH . J 6 HOH A 23 323 7 HOH HOH . J 6 HOH A 24 324 23 HOH HOH . J 6 HOH A 25 325 19 HOH HOH . J 6 HOH A 26 326 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DO3 . . . E 3 29.74 -3.167 18.346 1 26.85 ? N1 DO3 204 A 1 HETATM 2 N N2 DO3 . . . E 3 28.932 -3.171 15.42 1 43.32 ? N2 DO3 204 A 1 HETATM 3 N N3 DO3 . . . E 3 30.647 -0.501 15.607 1 56.79 ? N3 DO3 204 A 1 HETATM 4 N N4 DO3 . . . E 3 31.29 -0.853 18.707 1 54.05 ? N4 DO3 204 A 1 HETATM 5 O O1 DO3 . . . E 3 26.649 -2.837 18.594 1 35 ? O1 DO3 204 A 1 HETATM 6 O O3 DO3 . . . E 3 26.711 -1.625 16.339 1 50.03 ? O3 DO3 204 A 1 HETATM 7 O O5 DO3 . . . E 3 28.888 1.614 16.718 1 50.84 ? O5 DO3 204 A 1 HETATM 8 O O7 DO3 . . . E 3 28.997 -0.247 20.306 1 39.81 ? O7 DO3 204 A 1 HETATM 9 C C1 DO3 . . . E 3 29.363 -4.37 17.584 1 42.42 ? C1 DO3 204 A 1 HETATM 10 C C2 DO3 . . . E 3 29.648 -4.283 16.053 1 41.19 ? C2 DO3 204 A 1 HETATM 11 C C3 DO3 . . . E 3 29.662 -2.506 14.33 1 49.5 ? C3 DO3 204 A 1 HETATM 12 C C4 DO3 . . . E 3 30.898 -1.691 14.765 1 54.84 ? C4 DO3 204 A 1 HETATM 13 C C5 DO3 . . . E 3 31.895 -0.157 16.316 1 54.25 ? C5 DO3 204 A 1 HETATM 14 C C6 DO3 . . . E 3 31.714 0.223 17.795 1 54.92 ? C6 DO3 204 A 1 HETATM 15 C C7 DO3 . . . E 3 31.964 -2.132 18.436 1 50.96 ? C7 DO3 204 A 1 HETATM 16 C C8 DO3 . . . E 3 31.117 -3.316 18.799 1 43.51 ? C8 DO3 204 A 1 HETATM 17 C C9 DO3 . . . E 3 27.494 -3.553 19.351 1 38.44 ? C9 DO3 204 A 1 HETATM 18 C C10 DO3 . . . E 3 28.875 -2.962 19.46 1 29.83 ? C10 DO3 204 A 1 HETATM 19 C C11 DO3 . . . E 3 26.58 -2.278 15.23 1 45.86 ? C11 DO3 204 A 1 HETATM 20 C C12 DO3 . . . E 3 27.527 -3.451 15.124 1 43.75 ? C12 DO3 204 A 1 HETATM 21 C C13 DO3 . . . E 3 29.086 1.617 15.428 1 56.37 ? C13 DO3 204 A 1 HETATM 22 C C14 DO3 . . . E 3 30.088 0.636 14.846 1 57.51 ? C14 DO3 204 A 1 HETATM 23 C C15 DO3 . . . E 3 30.238 -0.445 20.988 1 52.57 ? C15 DO3 204 A 1 HETATM 24 C C16 DO3 . . . E 3 31.478 -0.458 20.109 1 54.06 ? C16 DO3 204 A 1 HETATM 25 C C17 DO3 . . . E 3 30.422 0.618 22.05 1 51.12 ? C17 DO3 204 A 1 HETATM 26 O O2 DO3 . . . E 3 27.219 -4.611 19.935 1 44.9 ? O2 DO3 204 A 1 HETATM 27 O O4 DO3 . . . E 3 25.779 -1.973 14.385 1 47.07 ? O4 DO3 204 A 1 HETATM 28 O O6 DO3 . . . E 3 28.499 2.388 14.692 1 58.58 ? O6 DO3 204 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #