data_6SR6 # _model_server_result.job_id R7jukRzl6jrHZwStdFNz5A _model_server_result.datetime_utc '2024-10-19 16:35:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sr6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":700}' # _entry.id 6SR6 # _exptl.entry_id 6SR6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.09 _cell.angle_gamma 90 _cell.entry_id 6SR6 _cell.length_a 51.977 _cell.length_b 258.454 _cell.length_c 53.017 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SR6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I 1 1 C,D,G,H,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O2B ATP . A ATP 700 1_555 F MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc2 F MG MG . A MG 701 1_555 I O HOH . A HOH 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc3 F MG MG . A MG 701 1_555 I O HOH . A HOH 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc4 F MG MG . A MG 701 1_555 I O HOH . A HOH 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc5 F MG MG . A MG 701 1_555 I O HOH . A HOH 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc6 F MG MG . A MG 701 1_555 I O HOH . A HOH 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc7 G O2B ATP . C ATP 700 1_555 H MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc8 H MG MG . C MG 701 1_555 J O HOH . C HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc9 H MG MG . C MG 701 1_555 J O HOH . C HOH 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc10 H MG MG . C MG 701 1_555 J O HOH . C HOH 834 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc11 H MG MG . C MG 701 1_555 J O HOH . C HOH 837 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc12 H MG MG . C MG 701 1_555 J O HOH . C HOH 839 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6SR6 _atom_sites.fract_transf_matrix[1][1] 0.019239 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003424 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003869 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ATP A 1 700 700 ATP ATP . F 4 MG A 1 701 701 MG MG . G 3 ATP C 1 700 700 ATP ATP . H 4 MG C 1 701 701 MG MG . I 5 HOH A 1 801 80 HOH HOH . I 5 HOH A 2 802 73 HOH HOH . I 5 HOH A 3 803 74 HOH HOH . I 5 HOH A 4 804 703 HOH HOH . I 5 HOH A 5 805 71 HOH HOH . I 5 HOH A 6 806 704 HOH HOH . I 5 HOH A 7 807 17 HOH HOH . I 5 HOH A 8 808 9 HOH HOH . I 5 HOH A 9 809 16 HOH HOH . I 5 HOH A 10 810 19 HOH HOH . I 5 HOH A 11 811 54 HOH HOH . I 5 HOH A 12 812 21 HOH HOH . I 5 HOH A 13 813 702 HOH HOH . I 5 HOH A 14 814 52 HOH HOH . I 5 HOH A 15 815 18 HOH HOH . I 5 HOH A 16 816 705 HOH HOH . I 5 HOH A 17 817 53 HOH HOH . I 5 HOH A 18 818 76 HOH HOH . I 5 HOH A 19 819 67 HOH HOH . I 5 HOH A 20 820 75 HOH HOH . I 5 HOH A 21 821 706 HOH HOH . I 5 HOH A 22 822 55 HOH HOH . I 5 HOH A 23 823 51 HOH HOH . I 5 HOH A 24 824 69 HOH HOH . I 5 HOH A 25 825 81 HOH HOH . I 5 HOH A 26 826 72 HOH HOH . I 5 HOH A 27 827 70 HOH HOH . J 5 HOH C 1 801 79 HOH HOH . J 5 HOH C 2 802 60 HOH HOH . J 5 HOH C 3 803 12 HOH HOH . J 5 HOH C 4 804 44 HOH HOH . J 5 HOH C 5 805 5 HOH HOH . J 5 HOH C 6 806 66 HOH HOH . J 5 HOH C 7 807 14 HOH HOH . J 5 HOH C 8 808 64 HOH HOH . J 5 HOH C 9 809 7 HOH HOH . J 5 HOH C 10 810 703 HOH HOH . J 5 HOH C 11 811 35 HOH HOH . J 5 HOH C 12 812 3 HOH HOH . J 5 HOH C 13 813 13 HOH HOH . J 5 HOH C 14 814 33 HOH HOH . J 5 HOH C 15 815 1 HOH HOH . J 5 HOH C 16 816 23 HOH HOH . J 5 HOH C 17 817 11 HOH HOH . J 5 HOH C 18 818 29 HOH HOH . J 5 HOH C 19 819 28 HOH HOH . J 5 HOH C 20 820 62 HOH HOH . J 5 HOH C 21 821 706 HOH HOH . J 5 HOH C 22 822 59 HOH HOH . J 5 HOH C 23 823 50 HOH HOH . J 5 HOH C 24 824 68 HOH HOH . J 5 HOH C 25 825 2 HOH HOH . J 5 HOH C 26 826 41 HOH HOH . J 5 HOH C 27 827 25 HOH HOH . J 5 HOH C 28 828 61 HOH HOH . J 5 HOH C 29 829 63 HOH HOH . J 5 HOH C 30 830 45 HOH HOH . J 5 HOH C 31 831 8 HOH HOH . J 5 HOH C 32 832 37 HOH HOH . J 5 HOH C 33 833 31 HOH HOH . J 5 HOH C 34 834 702 HOH HOH . J 5 HOH C 35 835 24 HOH HOH . J 5 HOH C 36 836 20 HOH HOH . J 5 HOH C 37 837 704 HOH HOH . J 5 HOH C 38 838 43 HOH HOH . J 5 HOH C 39 839 705 HOH HOH . J 5 HOH C 40 840 49 HOH HOH . J 5 HOH C 41 841 34 HOH HOH . J 5 HOH C 42 842 30 HOH HOH . J 5 HOH C 43 843 27 HOH HOH . J 5 HOH C 44 844 46 HOH HOH . J 5 HOH C 45 845 48 HOH HOH . J 5 HOH C 46 846 10 HOH HOH . J 5 HOH C 47 847 40 HOH HOH . J 5 HOH C 48 848 77 HOH HOH . J 5 HOH C 49 849 56 HOH HOH . J 5 HOH C 50 850 6 HOH HOH . J 5 HOH C 51 851 42 HOH HOH . J 5 HOH C 52 852 38 HOH HOH . J 5 HOH C 53 853 4 HOH HOH . J 5 HOH C 54 854 65 HOH HOH . J 5 HOH C 55 855 32 HOH HOH . J 5 HOH C 56 856 58 HOH HOH . J 5 HOH C 57 857 36 HOH HOH . J 5 HOH C 58 858 39 HOH HOH . J 5 HOH C 59 859 22 HOH HOH . J 5 HOH C 60 860 26 HOH HOH . J 5 HOH C 61 861 47 HOH HOH . J 5 HOH C 62 862 15 HOH HOH . K 5 HOH D 1 101 78 HOH HOH . K 5 HOH D 2 102 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 3 6.254 19.852 50.505 1 37.49 ? PG ATP 700 A 1 HETATM 2 O O1G ATP . . . E 3 5.761 20.405 49.189 1 45.76 ? O1G ATP 700 A 1 HETATM 3 O O2G ATP . . . E 3 5.773 20.612 51.718 1 29.6 ? O2G ATP 700 A 1 HETATM 4 O O3G ATP . . . E 3 7.717 19.491 50.544 1 36.34 ? O3G ATP 700 A 1 HETATM 5 P PB ATP . . . E 3 3.97 18.2 50.845 1 28 ? PB ATP 700 A 1 HETATM 6 O O1B ATP . . . E 3 3.596 16.909 50.163 1 29.85 ? O1B ATP 700 A 1 HETATM 7 O O2B ATP . . . E 3 3.233 19.486 50.554 1 33.12 ? O2B ATP 700 A 1 HETATM 8 O O3B ATP . . . E 3 5.551 18.415 50.641 1 39.24 ? O3B ATP 700 A 1 HETATM 9 P PA ATP . . . E 3 2.794 17.325 53.292 1 31.62 ? PA ATP 700 A 1 HETATM 10 O O1A ATP . . . E 3 2.5 15.939 52.779 1 34.55 ? O1A ATP 700 A 1 HETATM 11 O O2A ATP . . . E 3 1.694 18.338 53.484 1 33.05 ? O2A ATP 700 A 1 HETATM 12 O O3A ATP . . . E 3 3.99 17.958 52.431 1 39.01 ? O3A ATP 700 A 1 HETATM 13 O O5' ATP . . . E 3 3.582 17.143 54.672 1 41.69 ? O5' ATP 700 A 1 HETATM 14 C C5' ATP . . . E 3 4.752 16.335 54.655 1 35.45 ? C5' ATP 700 A 1 HETATM 15 C C4' ATP . . . E 3 5.451 16.478 55.991 1 39.11 ? C4' ATP 700 A 1 HETATM 16 O O4' ATP . . . E 3 4.485 16.254 57.016 1 26.88 ? O4' ATP 700 A 1 HETATM 17 C C3' ATP . . . E 3 6.55 15.442 56.149 1 42.45 ? C3' ATP 700 A 1 HETATM 18 O O3' ATP . . . E 3 7.746 16.085 56.604 1 40 ? O3' ATP 700 A 1 HETATM 19 C C2' ATP . . . E 3 6.038 14.503 57.219 1 38.53 ? C2' ATP 700 A 1 HETATM 20 O O2' ATP . . . E 3 7.105 14.073 58.065 1 41.66 ? O2' ATP 700 A 1 HETATM 21 C C1' ATP . . . E 3 5.038 15.359 57.976 1 35.29 ? C1' ATP 700 A 1 HETATM 22 N N9 ATP . . . E 3 3.974 14.557 58.622 1 41.56 ? N9 ATP 700 A 1 HETATM 23 C C8 ATP . . . E 3 3.122 13.702 58.026 1 40.36 ? C8 ATP 700 A 1 HETATM 24 N N7 ATP . . . E 3 2.286 13.143 58.94 1 39.94 ? N7 ATP 700 A 1 HETATM 25 C C5 ATP . . . E 3 2.606 13.649 60.147 1 41.75 ? C5 ATP 700 A 1 HETATM 26 C C6 ATP . . . E 3 2.127 13.492 61.541 1 39.77 ? C6 ATP 700 A 1 HETATM 27 N N6 ATP . . . E 3 1.105 12.658 61.841 1 41.14 ? N6 ATP 700 A 1 HETATM 28 N N1 ATP . . . E 3 2.745 14.211 62.505 1 38.37 ? N1 ATP 700 A 1 HETATM 29 C C2 ATP . . . E 3 3.762 15.047 62.229 1 37.3 ? C2 ATP 700 A 1 HETATM 30 N N3 ATP . . . E 3 4.249 15.239 60.99 1 41.73 ? N3 ATP 700 A 1 HETATM 31 C C4 ATP . . . E 3 3.723 14.579 59.93 1 42.88 ? C4 ATP 700 A 1 # _model_server_stats.io_time_ms 127 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #