data_6SRA # _model_server_result.job_id gzkZ-L-1-oHLrSWUeuxbyg _model_server_result.datetime_utc '2025-01-25 07:55:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sra # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6SRA # _exptl.entry_id 6SRA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 272.253 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description R-naringenin _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.7 _cell.angle_gamma 90 _cell.entry_id 6SRA _cell.length_a 67.891 _cell.length_b 141.959 _cell.length_c 65.309 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SRA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1,2 B,E,F,H 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 39.569159 0 58.848439 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 13 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 13 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id SG2 _struct_conn.ptnr2_label_comp_id GSH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GSH _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.187 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C15 H12 O5' _chem_comp.formula_weight 272.253 _chem_comp.id CWE _chem_comp.mon_nstd_flag . _chem_comp.name R-naringenin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C13 CWE sing 70 n n C13 C14 CWE doub 71 n y C13 C12 CWE sing 72 n y C14 C15 CWE sing 73 n y C12 C11 CWE doub 74 n y C15 C10 CWE doub 75 n y C11 C10 CWE sing 76 n y C10 C9 CWE sing 77 n n C8 C9 CWE sing 78 n n C8 C7 CWE sing 79 n n C9 O1 CWE sing 80 n n O1 C6 CWE sing 81 n n C7 O2 CWE doub 82 n n C7 C5 CWE sing 83 n n C6 C5 CWE doub 84 n y C6 C1 CWE sing 85 n y C5 C4 CWE sing 86 n y C1 C2 CWE doub 87 n y C4 O5 CWE sing 88 n n C4 C3 CWE doub 89 n y C2 C3 CWE sing 90 n y C2 O4 CWE sing 91 n n C1 H11 CWE sing 92 n n C3 H31 CWE sing 93 n n C8 H82 CWE sing 94 n n C8 H81 CWE sing 95 n n C9 H9 CWE sing 96 n n C11 H111 CWE sing 97 n n C12 H121 CWE sing 98 n n C14 H141 CWE sing 99 n n C15 H151 CWE sing 100 n n O3 HO3 CWE sing 101 n n O4 H41 CWE sing 102 n n O5 H51 CWE sing 103 n n # _atom_sites.entry_id 6SRA _atom_sites.fract_transf_matrix[1][1] 0.014729 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00709 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007044 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016993 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GSH A 1 301 240 GSH GSH . D 3 CWE A 1 302 2 CWE CWE . E 2 GSH B 1 301 240 GSH GSH . F 3 CWE B 1 302 1 CWE CWE . G 4 HOH A 1 401 32 HOH HOH . G 4 HOH A 2 402 5 HOH HOH . G 4 HOH A 3 403 19 HOH HOH . G 4 HOH A 4 404 35 HOH HOH . G 4 HOH A 5 405 1 HOH HOH . G 4 HOH A 6 406 23 HOH HOH . G 4 HOH A 7 407 43 HOH HOH . G 4 HOH A 8 408 34 HOH HOH . G 4 HOH A 9 409 27 HOH HOH . G 4 HOH A 10 410 37 HOH HOH . G 4 HOH A 11 411 17 HOH HOH . G 4 HOH A 12 412 16 HOH HOH . G 4 HOH A 13 413 29 HOH HOH . G 4 HOH A 14 414 21 HOH HOH . G 4 HOH A 15 415 7 HOH HOH . G 4 HOH A 16 416 10 HOH HOH . G 4 HOH A 17 417 33 HOH HOH . G 4 HOH A 18 418 25 HOH HOH . G 4 HOH A 19 419 42 HOH HOH . G 4 HOH A 20 420 14 HOH HOH . G 4 HOH A 21 421 31 HOH HOH . G 4 HOH A 22 422 2 HOH HOH . G 4 HOH A 23 423 20 HOH HOH . G 4 HOH A 24 424 18 HOH HOH . G 4 HOH A 25 425 30 HOH HOH . G 4 HOH A 26 426 3 HOH HOH . G 4 HOH A 27 427 13 HOH HOH . G 4 HOH A 28 428 8 HOH HOH . G 4 HOH A 29 429 15 HOH HOH . G 4 HOH A 30 430 22 HOH HOH . G 4 HOH A 31 431 40 HOH HOH . G 4 HOH A 32 432 6 HOH HOH . G 4 HOH A 33 433 39 HOH HOH . G 4 HOH A 34 434 4 HOH HOH . G 4 HOH A 35 435 46 HOH HOH . H 4 HOH B 1 401 24 HOH HOH . H 4 HOH B 2 402 28 HOH HOH . H 4 HOH B 3 403 36 HOH HOH . H 4 HOH B 4 404 9 HOH HOH . H 4 HOH B 5 405 11 HOH HOH . H 4 HOH B 6 406 26 HOH HOH . H 4 HOH B 7 407 44 HOH HOH . H 4 HOH B 8 408 41 HOH HOH . H 4 HOH B 9 409 12 HOH HOH . H 4 HOH B 10 410 38 HOH HOH . H 4 HOH B 11 411 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CWE . . . D 3 2.51 -19.661 1.185 1 30.32 ? C1 CWE 302 A 1 HETATM 2 C C2 CWE . . . D 3 2.309 -21.033 1.116 1 32.86 ? C2 CWE 302 A 1 HETATM 3 C C3 CWE . . . D 3 1.067 -21.592 1.392 1 38.27 ? C3 CWE 302 A 1 HETATM 4 C C4 CWE . . . D 3 0.006 -20.775 1.75 1 40.49 ? C4 CWE 302 A 1 HETATM 5 C C5 CWE . . . D 3 0.171 -19.37 1.813 1 41.89 ? C5 CWE 302 A 1 HETATM 6 C C6 CWE . . . D 3 1.448 -18.852 1.539 1 35.52 ? C6 CWE 302 A 1 HETATM 7 C C7 CWE . . . D 3 -0.958 -18.467 2.04 1 25.19 ? C7 CWE 302 A 1 HETATM 8 C C8 CWE . . . D 3 -0.65 -17.01 2.036 1 31.7 ? C8 CWE 302 A 1 HETATM 9 C C9 CWE . . . D 3 0.768 -16.725 2.364 1 31.59 ? C9 CWE 302 A 1 HETATM 10 O O1 CWE . . . D 3 1.71 -17.505 1.611 1 41.58 ? O1 CWE 302 A 1 HETATM 11 O O2 CWE . . . D 3 -2.099 -18.857 2.19 1 30.96 ? O2 CWE 302 A 1 HETATM 12 C C10 CWE . . . D 3 1.029 -15.278 2.052 1 37.06 ? C10 CWE 302 A 1 HETATM 13 C C11 CWE . . . D 3 1.828 -14.933 0.972 1 26.93 ? C11 CWE 302 A 1 HETATM 14 C C12 CWE . . . D 3 1.994 -13.611 0.596 1 36.02 ? C12 CWE 302 A 1 HETATM 15 C C13 CWE . . . D 3 1.357 -12.606 1.311 1 41.28 ? C13 CWE 302 A 1 HETATM 16 C C14 CWE . . . D 3 0.579 -12.931 2.416 1 30.24 ? C14 CWE 302 A 1 HETATM 17 C C15 CWE . . . D 3 0.42 -14.259 2.775 1 33.66 ? C15 CWE 302 A 1 HETATM 18 O O3 CWE . . . D 3 1.478 -11.305 0.896 1 43.41 ? O3 CWE 302 A 1 HETATM 19 O O4 CWE . . . D 3 3.383 -21.835 0.87 1 30.15 ? O4 CWE 302 A 1 HETATM 20 O O5 CWE . . . D 3 -1.18 -21.386 2.027 1 35.81 ? O5 CWE 302 A 1 HETATM 21 H H11 CWE . . . D 3 3.476 -19.207 0.97 1 36.39 ? H11 CWE 302 A 1 HETATM 22 H H31 CWE . . . D 3 0.926 -22.67 1.328 1 45.92 ? H31 CWE 302 A 1 HETATM 23 H H82 CWE . . . D 3 -0.905 -16.622 1.051 1 38.04 ? H82 CWE 302 A 1 HETATM 24 H H81 CWE . . . D 3 -1.306 -16.471 2.718 1 38.04 ? H81 CWE 302 A 1 HETATM 25 H H9 CWE . . . D 3 0.964 -16.903 3.42 1 37.91 ? H9 CWE 302 A 1 HETATM 26 H H111 CWE . . . D 3 2.339 -15.707 0.402 1 32.32 ? H111 CWE 302 A 1 HETATM 27 H H121 CWE . . . D 3 2.621 -13.363 -0.259 1 43.22 ? H121 CWE 302 A 1 HETATM 28 H H141 CWE . . . D 3 0.088 -12.162 3.01 1 36.29 ? H141 CWE 302 A 1 HETATM 29 H H151 CWE . . . D 3 -0.201 -14.468 3.645 1 40.4 ? H151 CWE 302 A 1 HETATM 30 H HO3 CWE . . . D 3 1.471 -11.301 -0.097 1 52.09 ? HO3 CWE 302 A 1 HETATM 31 H H41 CWE . . . D 3 4.187 -21.26 0.775 1 36.18 ? H41 CWE 302 A 1 HETATM 32 H H51 CWE . . . D 3 -1.865 -20.709 2.271 1 42.97 ? H51 CWE 302 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 32 #