data_6SRG
#
_model_server_result.job_id            Y3d63sWxTMij5LJT-Rjh4g 
_model_server_result.datetime_utc      '2025-07-30 20:09:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6srg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":504}' 
#
_entry.id    6SRG 
#
_exptl.entry_id    6SRG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              75.067 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6SRG 
_cell.length_a            103.736 
_cell.length_b            108.184 
_cell.length_c            210.976 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SRG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 482 A CYS 482 1_555 A SG CYS 482 A CYS 482 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
disulf ? disulf2 B SG CYS 482 B CYS 482 1_555 B SG CYS 482 B CYS 482 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc1 A OD1 ASP 276 A ASP 276 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc2 A OD2 ASP 276 A ASP 276 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc3 A OD2 ASP 287 A ASP 287 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc4 A OD1 ASP 287 A ASP 287 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc5 A NE2 HIS 370 A HIS 370 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc6 A OE2 GLU 412 A GLU 412 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc7 A OE2 GLU 452 A GLU 452 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc8 A OE1 GLU 452 A GLU 452 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc9 C MN MN . A MN 501 1_555 E O OH . A OH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc10 C MN MN . A MN 501 1_555 F O GLY . A GLY 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc11 D MN MN . A MN 502 1_555 E O OH . A OH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? 
metalc ? metalc12 D MN MN . A MN 502 1_555 F N GLY . A GLY 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? 
metalc ? metalc13 B OD1 ASP 276 B ASP 276 1_555 I MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc14 B OD2 ASP 276 B ASP 276 1_555 I MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc15 B OD2 ASP 287 B ASP 287 1_555 H MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc16 B OD1 ASP 287 B ASP 287 1_555 I MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc17 B NE2 HIS 370 B HIS 370 1_555 H MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc18 B OE2 GLU 412 B GLU 412 1_555 H MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc19 B OE2 GLU 452 B GLU 452 1_555 H MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc20 B OE1 GLU 452 B GLU 452 1_555 I MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc21 H MN MN . B MN 501 1_555 J O OH . B OH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc22 H MN MN . B MN 501 1_555 K O GLY . B GLY 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc23 I MN MN . B MN 502 1_555 J O OH . B OH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? 
metalc ? metalc24 I MN MN . B MN 502 1_555 K N GLY . B GLY 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
#
_chem_comp.formula           'C2 H5 N O2' 
_chem_comp.formula_weight    75.067 
_chem_comp.id                GLY 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              GLYCINE 
_chem_comp.type              'peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA GLY sing 120 n n 
N H GLY sing 121 n n 
N H2 GLY sing 122 n n 
CA C GLY sing 123 n n 
CA HA2 GLY sing 124 n n 
CA HA3 GLY sing 125 n n 
C O GLY doub 126 n n 
C OXT GLY sing 127 n n 
OXT HXT GLY sing 128 n n 
#
_atom_sites.entry_id                     6SRG 
_atom_sites.fract_transf_matrix[1][1]    0.00964 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009244 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00474 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 501 499 MN MN . 
D 2 MN A 1 502 500 MN MN . 
E 3 OH A 1 503 501 OH OH . 
F 4 GLY A 1 504 1 GLY GLY . 
G 5 PRO A 1 505 2 PRO PRO . 
H 2 MN B 1 501 499 MN MN . 
I 2 MN B 1 502 500 MN MN . 
J 3 OH B 1 503 501 OH OH . 
K 4 GLY B 1 504 1 GLY GLY . 
L 5 PRO B 1 505 2 PRO PRO . 
M 6 GOL B 1 506 1 GOL GOL . 
N 7 HOH A 1 601 16 HOH HOH . 
N 7 HOH A 2 602 75 HOH HOH . 
N 7 HOH A 3 603 15 HOH HOH . 
N 7 HOH A 4 604 125 HOH HOH . 
N 7 HOH A 5 605 119 HOH HOH . 
N 7 HOH A 6 606 12 HOH HOH . 
N 7 HOH A 7 607 73 HOH HOH . 
N 7 HOH A 8 608 100 HOH HOH . 
N 7 HOH A 9 609 41 HOH HOH . 
N 7 HOH A 10 610 59 HOH HOH . 
N 7 HOH A 11 611 131 HOH HOH . 
N 7 HOH A 12 612 83 HOH HOH . 
N 7 HOH A 13 613 69 HOH HOH . 
N 7 HOH A 14 614 87 HOH HOH . 
N 7 HOH A 15 615 107 HOH HOH . 
N 7 HOH A 16 616 34 HOH HOH . 
N 7 HOH A 17 617 1 HOH HOH . 
N 7 HOH A 18 618 5 HOH HOH . 
N 7 HOH A 19 619 21 HOH HOH . 
N 7 HOH A 20 620 67 HOH HOH . 
N 7 HOH A 21 621 64 HOH HOH . 
N 7 HOH A 22 622 30 HOH HOH . 
N 7 HOH A 23 623 95 HOH HOH . 
N 7 HOH A 24 624 123 HOH HOH . 
N 7 HOH A 25 625 129 HOH HOH . 
N 7 HOH A 26 626 4 HOH HOH . 
N 7 HOH A 27 627 25 HOH HOH . 
N 7 HOH A 28 628 99 HOH HOH . 
N 7 HOH A 29 629 18 HOH HOH . 
N 7 HOH A 30 630 81 HOH HOH . 
N 7 HOH A 31 631 14 HOH HOH . 
N 7 HOH A 32 632 127 HOH HOH . 
N 7 HOH A 33 633 63 HOH HOH . 
N 7 HOH A 34 634 36 HOH HOH . 
N 7 HOH A 35 635 56 HOH HOH . 
N 7 HOH A 36 636 11 HOH HOH . 
N 7 HOH A 37 637 24 HOH HOH . 
N 7 HOH A 38 638 23 HOH HOH . 
N 7 HOH A 39 639 96 HOH HOH . 
N 7 HOH A 40 640 85 HOH HOH . 
N 7 HOH A 41 641 128 HOH HOH . 
N 7 HOH A 42 642 115 HOH HOH . 
N 7 HOH A 43 643 116 HOH HOH . 
N 7 HOH A 44 644 74 HOH HOH . 
N 7 HOH A 45 645 102 HOH HOH . 
N 7 HOH A 46 646 121 HOH HOH . 
N 7 HOH A 47 647 44 HOH HOH . 
N 7 HOH A 48 648 88 HOH HOH . 
N 7 HOH A 49 649 66 HOH HOH . 
N 7 HOH A 50 650 84 HOH HOH . 
N 7 HOH A 51 651 38 HOH HOH . 
N 7 HOH A 52 652 58 HOH HOH . 
N 7 HOH A 53 653 126 HOH HOH . 
N 7 HOH A 54 654 48 HOH HOH . 
N 7 HOH A 55 655 110 HOH HOH . 
N 7 HOH A 56 656 32 HOH HOH . 
N 7 HOH A 57 657 80 HOH HOH . 
N 7 HOH A 58 658 97 HOH HOH . 
N 7 HOH A 59 659 108 HOH HOH . 
O 7 HOH B 1 601 103 HOH HOH . 
O 7 HOH B 2 602 37 HOH HOH . 
O 7 HOH B 3 603 120 HOH HOH . 
O 7 HOH B 4 604 114 HOH HOH . 
O 7 HOH B 5 605 105 HOH HOH . 
O 7 HOH B 6 606 47 HOH HOH . 
O 7 HOH B 7 607 17 HOH HOH . 
O 7 HOH B 8 608 62 HOH HOH . 
O 7 HOH B 9 609 31 HOH HOH . 
O 7 HOH B 10 610 9 HOH HOH . 
O 7 HOH B 11 611 53 HOH HOH . 
O 7 HOH B 12 612 68 HOH HOH . 
O 7 HOH B 13 613 71 HOH HOH . 
O 7 HOH B 14 614 28 HOH HOH . 
O 7 HOH B 15 615 98 HOH HOH . 
O 7 HOH B 16 616 122 HOH HOH . 
O 7 HOH B 17 617 78 HOH HOH . 
O 7 HOH B 18 618 92 HOH HOH . 
O 7 HOH B 19 619 45 HOH HOH . 
O 7 HOH B 20 620 60 HOH HOH . 
O 7 HOH B 21 621 20 HOH HOH . 
O 7 HOH B 22 622 54 HOH HOH . 
O 7 HOH B 23 623 50 HOH HOH . 
O 7 HOH B 24 624 8 HOH HOH . 
O 7 HOH B 25 625 2 HOH HOH . 
O 7 HOH B 26 626 112 HOH HOH . 
O 7 HOH B 27 627 55 HOH HOH . 
O 7 HOH B 28 628 10 HOH HOH . 
O 7 HOH B 29 629 29 HOH HOH . 
O 7 HOH B 30 630 13 HOH HOH . 
O 7 HOH B 31 631 43 HOH HOH . 
O 7 HOH B 32 632 6 HOH HOH . 
O 7 HOH B 33 633 35 HOH HOH . 
O 7 HOH B 34 634 65 HOH HOH . 
O 7 HOH B 35 635 76 HOH HOH . 
O 7 HOH B 36 636 51 HOH HOH . 
O 7 HOH B 37 637 70 HOH HOH . 
O 7 HOH B 38 638 49 HOH HOH . 
O 7 HOH B 39 639 33 HOH HOH . 
O 7 HOH B 40 640 72 HOH HOH . 
O 7 HOH B 41 641 82 HOH HOH . 
O 7 HOH B 42 642 3 HOH HOH . 
O 7 HOH B 43 643 52 HOH HOH . 
O 7 HOH B 44 644 26 HOH HOH . 
O 7 HOH B 45 645 90 HOH HOH . 
O 7 HOH B 46 646 27 HOH HOH . 
O 7 HOH B 47 647 86 HOH HOH . 
O 7 HOH B 48 648 79 HOH HOH . 
O 7 HOH B 49 649 19 HOH HOH . 
O 7 HOH B 50 650 89 HOH HOH . 
O 7 HOH B 51 651 93 HOH HOH . 
O 7 HOH B 52 652 40 HOH HOH . 
O 7 HOH B 53 653 46 HOH HOH . 
O 7 HOH B 54 654 109 HOH HOH . 
O 7 HOH B 55 655 22 HOH HOH . 
O 7 HOH B 56 656 111 HOH HOH . 
O 7 HOH B 57 657 61 HOH HOH . 
O 7 HOH B 58 658 118 HOH HOH . 
O 7 HOH B 59 659 7 HOH HOH . 
O 7 HOH B 60 660 101 HOH HOH . 
O 7 HOH B 61 661 124 HOH HOH . 
O 7 HOH B 62 662 91 HOH HOH . 
O 7 HOH B 63 663 104 HOH HOH . 
O 7 HOH B 64 664 113 HOH HOH . 
O 7 HOH B 65 665 42 HOH HOH . 
O 7 HOH B 66 666 94 HOH HOH . 
O 7 HOH B 67 667 77 HOH HOH . 
O 7 HOH B 68 668 57 HOH HOH . 
O 7 HOH B 69 669 117 HOH HOH . 
O 7 HOH B 70 670 106 HOH HOH . 
O 7 HOH B 71 671 130 HOH HOH . 
O 7 HOH B 72 672 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GLY . . . F 4 20.318 8.965 75.686 1 74.19 ? N GLY 504 A 1 
HETATM 2 C CA GLY . . . F 4 21.5 8.149 75.317 1 59.52 ? CA GLY 504 A 1 
HETATM 3 C C GLY . . . F 4 21.556 6.872 76.138 1 72.98 ? C GLY 504 A 1 
HETATM 4 O O GLY . . . F 4 20.951 6.782 77.215 1 58.52 ? O GLY 504 A 1 
HETATM 5 H H1 GLY . . . F 4 20.561 9.817 75.776 1 89 ? H1 GLY 504 A 1 
HETATM 6 H H2 GLY . . . F 4 19.7 8.898 75.049 1 89 ? H2 GLY 504 A 1 
HETATM 7 H H3 GLY . . . F 4 19.983 8.67 76.457 1 89 ? H3 GLY 504 A 1 
HETATM 8 H HA2 GLY . . . F 4 21.456 7.914 74.377 1 71.4 ? HA2 GLY 504 A 1 
HETATM 9 H HA3 GLY . . . F 4 22.311 8.657 75.473 1 71.4 ? HA3 GLY 504 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    54 
_model_server_stats.query_time_ms           487 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           9 
#