data_6SS9
#
_model_server_result.job_id            5TuZh2CxeupamOzyi_bdrA 
_model_server_result.datetime_utc      '2024-12-17 08:51:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ss9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":304}' 
#
_entry.id    6SS9 
#
_exptl.entry_id    6SS9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          123.47 
_cell.angle_gamma         90 
_cell.entry_id            6SS9 
_cell.length_a            199.751 
_cell.length_b            48.261 
_cell.length_c            117.754 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SS9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,L,R,S 1 1 
D,E,F,M,N,O,P,Q,T,U 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 P N N 
? 7 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
disulf ? disulf4 D SG CYS 101 D CYS 101 1_555 D SG CYS 164 D CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf5 D SG CYS 203 D CYS 203 1_555 D SG CYS 259 D CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf6 E SG CYS 26 E CYS 25 1_555 E SG CYS 81 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6SS9 
_atom_sites.fract_transf_matrix[1][1]    0.005006 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003309 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020721 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01018 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 PEG A 1 301 1 PEG PEG . 
H 5 SO4 A 1 302 1 SO4 SO4 . 
I 5 SO4 A 1 303 4 SO4 SO4 . 
J 5 SO4 A 1 304 5 SO4 SO4 . 
K 6 GOL A 1 305 2 GOL GOL . 
L 4 PEG B 1 101 2 PEG PEG . 
M 5 SO4 D 1 301 2 SO4 SO4 . 
N 5 SO4 D 1 302 3 SO4 SO4 . 
O 6 GOL D 1 303 1 GOL GOL . 
P 7 EDO D 1 304 2 EDO EDO . 
Q 7 EDO E 1 101 1 EDO EDO . 
R 8 HOH A 1 401 47 HOH HOH . 
R 8 HOH A 2 402 15 HOH HOH . 
R 8 HOH A 3 403 4 HOH HOH . 
R 8 HOH A 4 404 20 HOH HOH . 
R 8 HOH A 5 405 33 HOH HOH . 
R 8 HOH A 6 406 1 HOH HOH . 
R 8 HOH A 7 407 38 HOH HOH . 
R 8 HOH A 8 408 3 HOH HOH . 
R 8 HOH A 9 409 11 HOH HOH . 
R 8 HOH A 10 410 37 HOH HOH . 
R 8 HOH A 11 411 6 HOH HOH . 
R 8 HOH A 12 412 25 HOH HOH . 
S 8 HOH B 1 201 44 HOH HOH . 
S 8 HOH B 2 202 22 HOH HOH . 
S 8 HOH B 3 203 8 HOH HOH . 
S 8 HOH B 4 204 46 HOH HOH . 
S 8 HOH B 5 205 35 HOH HOH . 
S 8 HOH B 6 206 36 HOH HOH . 
S 8 HOH B 7 207 9 HOH HOH . 
T 8 HOH D 1 401 28 HOH HOH . 
T 8 HOH D 2 402 5 HOH HOH . 
T 8 HOH D 3 403 40 HOH HOH . 
T 8 HOH D 4 404 34 HOH HOH . 
T 8 HOH D 5 405 30 HOH HOH . 
T 8 HOH D 6 406 27 HOH HOH . 
T 8 HOH D 7 407 17 HOH HOH . 
T 8 HOH D 8 408 31 HOH HOH . 
T 8 HOH D 9 409 45 HOH HOH . 
T 8 HOH D 10 410 24 HOH HOH . 
T 8 HOH D 11 411 2 HOH HOH . 
T 8 HOH D 12 412 29 HOH HOH . 
T 8 HOH D 13 413 7 HOH HOH . 
T 8 HOH D 14 414 13 HOH HOH . 
T 8 HOH D 15 415 10 HOH HOH . 
T 8 HOH D 16 416 26 HOH HOH . 
T 8 HOH D 17 417 23 HOH HOH . 
T 8 HOH D 18 418 14 HOH HOH . 
T 8 HOH D 19 419 21 HOH HOH . 
T 8 HOH D 20 420 16 HOH HOH . 
T 8 HOH D 21 421 48 HOH HOH . 
U 8 HOH E 1 201 32 HOH HOH . 
U 8 HOH E 2 202 18 HOH HOH . 
U 8 HOH E 3 203 41 HOH HOH . 
U 8 HOH E 4 204 43 HOH HOH . 
U 8 HOH E 5 205 39 HOH HOH . 
U 8 HOH E 6 206 42 HOH HOH . 
U 8 HOH E 7 207 19 HOH HOH . 
U 8 HOH E 8 208 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . P 7 9.193 -5.9 34.95 1 77.89 ? C1 EDO 304 D 1 
HETATM 2 O O1 EDO . . . P 7 7.855 -6.198 34.519 1 77.27 ? O1 EDO 304 D 1 
HETATM 3 C C2 EDO . . . P 7 9.782 -4.788 34.094 1 79.96 ? C2 EDO 304 D 1 
HETATM 4 O O2 EDO . . . P 7 10.447 -3.82 34.904 1 77.99 ? O2 EDO 304 D 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           4 
#