data_6SSI # _model_server_result.job_id eQdsbHx9tF-46da9usZiWQ _model_server_result.datetime_utc '2024-11-15 21:52:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ssi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":403}' # _entry.id 6SSI # _exptl.entry_id 6SSI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.39 _cell.angle_gamma 90 _cell.entry_id 6SSI _cell.length_a 105.604 _cell.length_b 146.563 _cell.length_c 140.242 _cell.Z_PDB 10 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SSI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 M N N ? 5 Q N N ? 5 X N N ? 5 DA N N ? 5 JA N N ? 5 KA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 F SG CYS 22 F CYS 22 1_555 F SG CYS 95 F CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 G SG CYS 22 G CYS 22 1_555 G SG CYS 95 G CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 H SG CYS 22 H CYS 22 1_555 H SG CYS 95 H CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 I SG CYS 22 I CYS 22 1_555 I SG CYS 95 I CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 J SG CYS 22 J CYS 22 1_555 J SG CYS 95 J CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A O ASP 149 A ASP 153 1_555 N CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc2 A OE2 GLU 151 A GLU 155 1_555 N CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc3 A OD1 ASP 154 A ASP 158 1_555 N CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc4 A OD2 ASP 154 A ASP 158 1_555 N CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc5 B O ASP 149 B ASP 153 1_555 S CA CA . B CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc6 B OD1 ASP 154 B ASP 158 1_555 S CA CA . B CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.191 ? metalc ? metalc7 B OD2 ASP 154 B ASP 158 1_555 S CA CA . B CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc8 C O ASP 149 C ASP 153 1_555 Z CA CA . C CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc9 C OE1 GLU 151 C GLU 155 1_555 Z CA CA . C CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc10 C OD1 ASP 154 C ASP 158 1_555 Z CA CA . C CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc11 C OD2 ASP 154 C ASP 158 1_555 Z CA CA . C CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc12 D OD1 ASP 109 D ASP 113 1_555 MA CA CA . E CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc13 D O ASP 149 D ASP 153 1_555 FA CA CA . D CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc14 D OE1 GLU 151 D GLU 155 1_555 FA CA CA . D CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc15 D OD1 ASP 154 D ASP 158 1_555 FA CA CA . D CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc16 D OD2 ASP 154 D ASP 158 1_555 FA CA CA . D CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc17 E OE1 GLU 151 E GLU 155 1_555 MA CA CA . E CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc18 E OD1 ASP 154 E ASP 158 1_555 MA CA CA . E CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc19 E OD2 ASP 154 E ASP 158 1_555 MA CA CA . E CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 150 n n C1 C2 GOL sing 151 n n C1 H11 GOL sing 152 n n C1 H12 GOL sing 153 n n O1 HO1 GOL sing 154 n n C2 O2 GOL sing 155 n n C2 C3 GOL sing 156 n n C2 H2 GOL sing 157 n n O2 HO2 GOL sing 158 n n C3 O3 GOL sing 159 n n C3 H31 GOL sing 160 n n C3 H32 GOL sing 161 n n O3 HO3 GOL sing 162 n n # _atom_sites.entry_id 6SSI _atom_sites.fract_transf_matrix[1][1] 0.009469 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003709 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 3 ABU A 1 401 401 ABU ABU . L 4 MES A 1 402 501 MES MES . M 5 GOL A 1 403 601 GOL GOL . N 6 CA A 1 404 801 CA CA . O 3 ABU B 1 401 401 ABU ABU . P 4 MES B 1 402 501 MES MES . Q 5 GOL B 1 403 601 GOL GOL . R 7 PG4 B 1 404 701 PG4 PG4 . S 6 CA B 1 405 801 CA CA . T 8 UMQ B 1 406 2 UMQ UMQ . U 8 UMQ B 1 407 3 UMQ UMQ . V 3 ABU C 1 401 401 ABU ABU . W 4 MES C 1 402 501 MES MES . X 5 GOL C 1 403 601 GOL GOL . Y 7 PG4 C 1 404 701 PG4 PG4 . Z 6 CA C 1 405 801 CA CA . AA 8 UMQ C 1 406 4 UMQ UMQ . BA 3 ABU D 1 401 401 ABU ABU . CA 4 MES D 1 402 501 MES MES . DA 5 GOL D 1 403 601 GOL GOL . EA 7 PG4 D 1 404 701 PG4 PG4 . FA 6 CA D 1 405 801 CA CA . GA 9 ACT D 1 406 901 ACT ACT . HA 3 ABU E 1 401 401 ABU ABU . IA 4 MES E 1 402 501 MES MES . JA 5 GOL E 1 403 601 GOL GOL . KA 5 GOL E 1 404 602 GOL GOL . LA 7 PG4 E 1 405 701 PG4 PG4 . MA 6 CA E 1 406 801 CA CA . NA 9 ACT E 1 407 901 ACT ACT . OA 8 UMQ E 1 408 1 UMQ UMQ . PA 8 UMQ E 1 409 5 UMQ UMQ . QA 10 HOH A 1 501 3 HOH HOH . QA 10 HOH A 2 502 118 HOH HOH . QA 10 HOH A 3 503 29 HOH HOH . QA 10 HOH A 4 504 126 HOH HOH . QA 10 HOH A 5 505 105 HOH HOH . QA 10 HOH A 6 506 1 HOH HOH . QA 10 HOH A 7 507 89 HOH HOH . QA 10 HOH A 8 508 140 HOH HOH . QA 10 HOH A 9 509 31 HOH HOH . QA 10 HOH A 10 510 40 HOH HOH . QA 10 HOH A 11 511 103 HOH HOH . QA 10 HOH A 12 512 121 HOH HOH . QA 10 HOH A 13 513 130 HOH HOH . QA 10 HOH A 14 514 65 HOH HOH . QA 10 HOH A 15 515 22 HOH HOH . QA 10 HOH A 16 516 131 HOH HOH . QA 10 HOH A 17 517 128 HOH HOH . QA 10 HOH A 18 518 58 HOH HOH . RA 10 HOH B 1 501 34 HOH HOH . RA 10 HOH B 2 502 23 HOH HOH . RA 10 HOH B 3 503 42 HOH HOH . RA 10 HOH B 4 504 7 HOH HOH . RA 10 HOH B 5 505 8 HOH HOH . RA 10 HOH B 6 506 135 HOH HOH . RA 10 HOH B 7 507 38 HOH HOH . RA 10 HOH B 8 508 119 HOH HOH . RA 10 HOH B 9 509 90 HOH HOH . RA 10 HOH B 10 510 35 HOH HOH . RA 10 HOH B 11 511 15 HOH HOH . RA 10 HOH B 12 512 76 HOH HOH . RA 10 HOH B 13 513 19 HOH HOH . RA 10 HOH B 14 514 41 HOH HOH . RA 10 HOH B 15 515 17 HOH HOH . RA 10 HOH B 16 516 115 HOH HOH . RA 10 HOH B 17 517 52 HOH HOH . RA 10 HOH B 18 518 111 HOH HOH . RA 10 HOH B 19 519 77 HOH HOH . RA 10 HOH B 20 520 72 HOH HOH . RA 10 HOH B 21 521 79 HOH HOH . RA 10 HOH B 22 522 117 HOH HOH . SA 10 HOH C 1 501 107 HOH HOH . SA 10 HOH C 2 502 13 HOH HOH . SA 10 HOH C 3 503 9 HOH HOH . SA 10 HOH C 4 504 51 HOH HOH . SA 10 HOH C 5 505 24 HOH HOH . SA 10 HOH C 6 506 127 HOH HOH . SA 10 HOH C 7 507 123 HOH HOH . SA 10 HOH C 8 508 28 HOH HOH . SA 10 HOH C 9 509 83 HOH HOH . SA 10 HOH C 10 510 2 HOH HOH . SA 10 HOH C 11 511 54 HOH HOH . SA 10 HOH C 12 512 134 HOH HOH . SA 10 HOH C 13 513 129 HOH HOH . SA 10 HOH C 14 514 10 HOH HOH . SA 10 HOH C 15 515 113 HOH HOH . SA 10 HOH C 16 516 26 HOH HOH . SA 10 HOH C 17 517 98 HOH HOH . SA 10 HOH C 18 518 143 HOH HOH . SA 10 HOH C 19 519 32 HOH HOH . SA 10 HOH C 20 520 102 HOH HOH . SA 10 HOH C 21 521 112 HOH HOH . SA 10 HOH C 22 522 46 HOH HOH . SA 10 HOH C 23 523 110 HOH HOH . SA 10 HOH C 24 524 104 HOH HOH . SA 10 HOH C 25 525 30 HOH HOH . SA 10 HOH C 26 526 43 HOH HOH . SA 10 HOH C 27 527 73 HOH HOH . SA 10 HOH C 28 528 101 HOH HOH . SA 10 HOH C 29 529 109 HOH HOH . SA 10 HOH C 30 530 100 HOH HOH . SA 10 HOH C 31 531 116 HOH HOH . TA 10 HOH D 1 501 144 HOH HOH . TA 10 HOH D 2 502 48 HOH HOH . TA 10 HOH D 3 503 11 HOH HOH . TA 10 HOH D 4 504 4 HOH HOH . TA 10 HOH D 5 505 78 HOH HOH . TA 10 HOH D 6 506 124 HOH HOH . TA 10 HOH D 7 507 6 HOH HOH . TA 10 HOH D 8 508 59 HOH HOH . TA 10 HOH D 9 509 86 HOH HOH . TA 10 HOH D 10 510 50 HOH HOH . TA 10 HOH D 11 511 74 HOH HOH . TA 10 HOH D 12 512 96 HOH HOH . TA 10 HOH D 13 513 114 HOH HOH . TA 10 HOH D 14 514 66 HOH HOH . TA 10 HOH D 15 515 95 HOH HOH . TA 10 HOH D 16 516 141 HOH HOH . TA 10 HOH D 17 517 55 HOH HOH . TA 10 HOH D 18 518 87 HOH HOH . UA 10 HOH E 1 501 16 HOH HOH . UA 10 HOH E 2 502 133 HOH HOH . UA 10 HOH E 3 503 45 HOH HOH . UA 10 HOH E 4 504 108 HOH HOH . UA 10 HOH E 5 505 132 HOH HOH . UA 10 HOH E 6 506 120 HOH HOH . UA 10 HOH E 7 507 91 HOH HOH . UA 10 HOH E 8 508 81 HOH HOH . UA 10 HOH E 9 509 99 HOH HOH . UA 10 HOH E 10 510 139 HOH HOH . UA 10 HOH E 11 511 69 HOH HOH . UA 10 HOH E 12 512 71 HOH HOH . UA 10 HOH E 13 513 122 HOH HOH . UA 10 HOH E 14 514 37 HOH HOH . UA 10 HOH E 15 515 138 HOH HOH . UA 10 HOH E 16 516 62 HOH HOH . VA 10 HOH G 1 201 25 HOH HOH . VA 10 HOH G 2 202 12 HOH HOH . VA 10 HOH G 3 203 39 HOH HOH . VA 10 HOH G 4 204 82 HOH HOH . VA 10 HOH G 5 205 36 HOH HOH . VA 10 HOH G 6 206 106 HOH HOH . VA 10 HOH G 7 207 70 HOH HOH . VA 10 HOH G 8 208 85 HOH HOH . VA 10 HOH G 9 209 67 HOH HOH . VA 10 HOH G 10 210 57 HOH HOH . VA 10 HOH G 11 211 63 HOH HOH . VA 10 HOH G 12 212 64 HOH HOH . VA 10 HOH G 13 213 68 HOH HOH . VA 10 HOH G 14 214 60 HOH HOH . WA 10 HOH H 1 201 137 HOH HOH . WA 10 HOH H 2 202 44 HOH HOH . WA 10 HOH H 3 203 75 HOH HOH . WA 10 HOH H 4 204 88 HOH HOH . WA 10 HOH H 5 205 80 HOH HOH . WA 10 HOH H 6 206 14 HOH HOH . WA 10 HOH H 7 207 27 HOH HOH . WA 10 HOH H 8 208 84 HOH HOH . WA 10 HOH H 9 209 5 HOH HOH . WA 10 HOH H 10 210 97 HOH HOH . WA 10 HOH H 11 211 142 HOH HOH . WA 10 HOH H 12 212 49 HOH HOH . WA 10 HOH H 13 213 93 HOH HOH . WA 10 HOH H 14 214 21 HOH HOH . WA 10 HOH H 15 215 18 HOH HOH . WA 10 HOH H 16 216 47 HOH HOH . WA 10 HOH H 17 217 53 HOH HOH . WA 10 HOH H 18 218 125 HOH HOH . XA 10 HOH I 1 201 145 HOH HOH . XA 10 HOH I 2 202 33 HOH HOH . XA 10 HOH I 3 203 92 HOH HOH . XA 10 HOH I 4 204 94 HOH HOH . XA 10 HOH I 5 205 56 HOH HOH . XA 10 HOH I 6 206 61 HOH HOH . YA 10 HOH J 1 201 136 HOH HOH . YA 10 HOH J 2 202 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . JA 5 26.274 -4.967 58.714 1 73.93 ? C1 GOL 403 E 1 HETATM 2 O O1 GOL . . . JA 5 27.073 -6.128 58.935 1 75.17 ? O1 GOL 403 E 1 HETATM 3 C C2 GOL . . . JA 5 25.014 -5.017 59.547 1 73.63 ? C2 GOL 403 E 1 HETATM 4 O O2 GOL . . . JA 5 25.375 -5.117 60.918 1 74.75 ? O2 GOL 403 E 1 HETATM 5 C C3 GOL . . . JA 5 24.115 -3.816 59.362 1 74.21 ? C3 GOL 403 E 1 HETATM 6 O O3 GOL . . . JA 5 22.862 -4 60.016 1 74.91 ? O3 GOL 403 E 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 63 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #