data_6SSP # _model_server_result.job_id ZDmBq5p9FlccsmyZQVZghw _model_server_result.datetime_utc '2024-11-15 23:33:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ssp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":401}' # _entry.id 6SSP # _exptl.entry_id 6SSP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 496.589 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UNDECYL-MALTOSIDE _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 71.02 _cell.angle_beta 64.19 _cell.angle_gamma 61.66 _cell.entry_id 6SSP _cell.length_a 121.804 _cell.length_b 122.354 _cell.length_c 128.221 _cell.Z_PDB 10 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SSP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? hexameric 6 author_defined_assembly 1 ? hexameric 6 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,K,M,N,O,P,Q,R,S,T,U 1 1 F,G,H,I,J,L,V,W,X,Y,Z,AA,BA,CA,DA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 P N N ? 4 Q N N ? 4 S N N ? 4 U N N ? 4 X N N ? 4 Z N N ? 4 AA N N ? 4 CA N N ? 4 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 K SG CYS 22 K CYS 22 1_555 K SG CYS 96 K CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 L SG CYS 22 L CYS 22 1_555 L SG CYS 96 L CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OD1 ASP 109 A ASP 113 1_555 M CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc2 B OD1 ASP 109 B ASP 113 1_555 O CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc3 C OD1 ASP 109 C ASP 113 1_555 R CA CA . C CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc4 D OD1 ASP 154 D ASP 158 1_555 T CA CA . D CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc5 T CA CA . D CA 401 1_555 E OD1 ASP 109 E ASP 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc6 F OD1 ASP 109 F ASP 113 1_555 V CA CA . F CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc7 F OD1 ASN 150 F ASN 154 1_555 W CA CA . F CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc8 F OD1 ASP 154 F ASP 158 1_555 W CA CA . F CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc9 F OD2 ASP 154 F ASP 158 1_555 W CA CA . F CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc10 V CA CA . F CA 401 1_555 J OD1 ASP 154 J ASP 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.026 ? metalc ? metalc11 W CA CA . F CA 402 1_555 G OD1 ASP 109 G ASP 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.176 ? metalc ? metalc12 G OD1 ASP 154 G ASP 158 1_555 Y CA CA . G CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc13 Y CA CA . G CA 401 1_555 H OD1 ASP 109 H ASP 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc14 H OD1 ASN 150 H ASN 154 1_555 BA CA CA . H CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.197 ? metalc ? metalc15 H OD1 ASP 154 H ASP 158 1_555 BA CA CA . H CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.019 ? metalc ? metalc16 BA CA CA . H CA 401 1_555 I OD1 ASP 109 I ASP 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? # _chem_comp.formula 'C23 H44 O11' _chem_comp.formula_weight 496.589 _chem_comp.id UMQ _chem_comp.mon_nstd_flag . _chem_comp.name UNDECYL-MALTOSIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms UNDECYL-BETA-D-MALTOPYRANOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 O2 UMQ sing 356 n n C2 C1 UMQ sing 357 n n C2 C3 UMQ sing 358 n n C2 H21 UMQ sing 359 n n C4 C5 UMQ sing 360 n n C4 O4 UMQ sing 361 n n C4 C3 UMQ sing 362 n n C4 H41 UMQ sing 363 n n C5 C6 UMQ sing 364 n n C5 O5 UMQ sing 365 n n C5 H51 UMQ sing 366 n n C6 O6 UMQ sing 367 n n C6 H61 UMQ sing 368 n n C6 H62 UMQ sing 369 n n O2 HO21 UMQ sing 370 n n O4 HO41 UMQ sing 371 n n C1 O1 UMQ sing 372 n n C1 O5 UMQ sing 373 n n C1 H11 UMQ sing 374 n n C3 O3 UMQ sing 375 n n C3 H31 UMQ sing 376 n n O1 C4' UMQ sing 377 n n O3 HO31 UMQ sing 378 n n O6 HO61 UMQ sing 379 n n C1' C2' UMQ sing 380 n n C1' O1' UMQ sing 381 n n C1' O5' UMQ sing 382 n n C1' "H1'1" UMQ sing 383 n n C2' C3' UMQ sing 384 n n C2' O2' UMQ sing 385 n n C2' "H2'1" UMQ sing 386 n n C3' C4' UMQ sing 387 n n C3' O3' UMQ sing 388 n n C3' "H3'1" UMQ sing 389 n n C4' C5' UMQ sing 390 n n C4' "H4'1" UMQ sing 391 n n C5' C6' UMQ sing 392 n n C5' O5' UMQ sing 393 n n C5' "H5'1" UMQ sing 394 n n C6' O6' UMQ sing 395 n n C6' "H6'1" UMQ sing 396 n n C6' "H6'2" UMQ sing 397 n n O1' CA UMQ sing 398 n n O3' HO3' UMQ sing 399 n n O6' HO6' UMQ sing 400 n n O2' HO2' UMQ sing 401 n n CA CB UMQ sing 402 n n CA HA1 UMQ sing 403 n n CA HA2 UMQ sing 404 n n CB CC UMQ sing 405 n n CB HB1 UMQ sing 406 n n CB HB2 UMQ sing 407 n n CC CD UMQ sing 408 n n CC HC1 UMQ sing 409 n n CC HC2 UMQ sing 410 n n CD CF UMQ sing 411 n n CD HD1 UMQ sing 412 n n CD HD2 UMQ sing 413 n n CF CG UMQ sing 414 n n CF HF1 UMQ sing 415 n n CF HF2 UMQ sing 416 n n CG CH UMQ sing 417 n n CG HG1 UMQ sing 418 n n CG HG2 UMQ sing 419 n n CH CI UMQ sing 420 n n CH HH1 UMQ sing 421 n n CH HH2 UMQ sing 422 n n CI CJ UMQ sing 423 n n CI HI1 UMQ sing 424 n n CI HI2 UMQ sing 425 n n CJ CK UMQ sing 426 n n CJ HJ1 UMQ sing 427 n n CJ HJ2 UMQ sing 428 n n CK CL UMQ sing 429 n n CK HK1 UMQ sing 430 n n CK HK2 UMQ sing 431 n n CL HL1 UMQ sing 432 n n CL HL2 UMQ sing 433 n n CL HL3 UMQ sing 434 n n # _atom_sites.entry_id 6SSP _atom_sites.fract_transf_matrix[1][1] 0.00821 _atom_sites.fract_transf_matrix[1][2] -0.004428 _atom_sites.fract_transf_matrix[1][3] -0.003346 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009286 _atom_sites.fract_transf_matrix[2][3] -0.001405 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 CA A 1 401 1 CA CA . N 4 UMQ A 1 402 2 UMQ UMQ . O 3 CA B 1 401 2 CA CA . P 4 UMQ B 1 402 1 UMQ UMQ . Q 4 UMQ B 1 403 5 UMQ UMQ . R 3 CA C 1 401 3 CA CA . S 4 UMQ C 1 402 4 UMQ UMQ . T 3 CA D 1 401 4 CA CA . U 4 UMQ E 1 401 3 UMQ UMQ . V 3 CA F 1 401 5 CA CA . W 3 CA F 1 402 6 CA CA . X 4 UMQ F 1 403 7 UMQ UMQ . Y 3 CA G 1 401 7 CA CA . Z 4 UMQ G 1 402 6 UMQ UMQ . AA 4 UMQ G 1 403 10 UMQ UMQ . BA 3 CA H 1 401 8 CA CA . CA 4 UMQ I 1 401 9 UMQ UMQ . DA 4 UMQ J 1 401 8 UMQ UMQ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 UMQ . . . DA 4 -38.131 -10.158 -59.599 1 144.81 ? C2 UMQ 401 J 1 HETATM 2 C C4 UMQ . . . DA 4 -36.07 -9.741 -58.181 1 144.91 ? C4 UMQ 401 J 1 HETATM 3 C C5 UMQ . . . DA 4 -36.08 -8.301 -58.698 1 144.8 ? C5 UMQ 401 J 1 HETATM 4 C C6 UMQ . . . DA 4 -34.699 -7.682 -58.814 1 145.23 ? C6 UMQ 401 J 1 HETATM 5 O O2 UMQ . . . DA 4 -39.495 -10.559 -59.575 1 145.66 ? O2 UMQ 401 J 1 HETATM 6 O O4 UMQ . . . DA 4 -35.566 -9.785 -56.85 1 145.24 ? O4 UMQ 401 J 1 HETATM 7 C C1 UMQ . . . DA 4 -38.032 -8.709 -60.072 1 144.08 ? C1 UMQ 401 J 1 HETATM 8 C C3 UMQ . . . DA 4 -37.475 -10.345 -58.228 1 144.9 ? C3 UMQ 401 J 1 HETATM 9 O O1 UMQ . . . DA 4 -38.962 -7.909 -59.353 1 142.64 ? O1 UMQ 401 J 1 HETATM 10 O O3 UMQ . . . DA 4 -37.407 -11.735 -57.931 1 145.67 ? O3 UMQ 401 J 1 HETATM 11 O O5 UMQ . . . DA 4 -36.686 -8.235 -60.002 1 143.9 ? O5 UMQ 401 J 1 HETATM 12 O O6 UMQ . . . DA 4 -33.773 -8.555 -59.451 1 147.09 ? O6 UMQ 401 J 1 HETATM 13 C C1' UMQ . . . DA 4 -40.368 -4.047 -59.643 1 139.21 ? C1' UMQ 401 J 1 HETATM 14 C C2' UMQ . . . DA 4 -39.427 -4.454 -60.768 1 140.61 ? C2' UMQ 401 J 1 HETATM 15 C C3' UMQ . . . DA 4 -39.17 -5.958 -60.752 1 142.79 ? C3' UMQ 401 J 1 HETATM 16 C C4' UMQ . . . DA 4 -38.827 -6.475 -59.352 1 142.64 ? C4' UMQ 401 J 1 HETATM 17 C C5' UMQ . . . DA 4 -39.742 -5.902 -58.268 1 142.82 ? C5' UMQ 401 J 1 HETATM 18 C C6' UMQ . . . DA 4 -39.278 -6.167 -56.849 1 142.25 ? C6' UMQ 401 J 1 HETATM 19 O O1' UMQ . . . DA 4 -40.503 -2.657 -59.686 1 136.24 ? O1' UMQ 401 J 1 HETATM 20 O O3' UMQ . . . DA 4 -38.092 -6.228 -61.645 1 143.9 ? O3' UMQ 401 J 1 HETATM 21 O O5' UMQ . . . DA 4 -39.838 -4.472 -58.399 1 141.6 ? O5' UMQ 401 J 1 HETATM 22 O O6' UMQ . . . DA 4 -39.031 -7.543 -56.596 1 141.41 ? O6' UMQ 401 J 1 HETATM 23 O O2' UMQ . . . DA 4 -40.008 -4.095 -62.012 1 141.3 ? O2' UMQ 401 J 1 HETATM 24 C CA UMQ . . . DA 4 -41.528 -2.149 -58.833 1 133.55 ? CA UMQ 401 J 1 HETATM 25 C CB UMQ . . . DA 4 -42.199 -0.986 -59.517 1 130.9 ? CB UMQ 401 J 1 HETATM 26 C CC UMQ . . . DA 4 -42.496 0.149 -58.562 1 127.82 ? CC UMQ 401 J 1 HETATM 27 C CD UMQ . . . DA 4 -43.96 0.508 -58.424 1 125.96 ? CD UMQ 401 J 1 HETATM 28 C CF UMQ . . . DA 4 -44.237 1.581 -57.383 1 123.87 ? CF UMQ 401 J 1 HETATM 29 C CG UMQ . . . DA 4 -45.706 1.73 -57.033 1 122.62 ? CG UMQ 401 J 1 HETATM 30 C CH UMQ . . . DA 4 -46.096 3.06 -56.416 1 121.06 ? CH UMQ 401 J 1 HETATM 31 C CI UMQ . . . DA 4 -47.59 3.198 -56.157 1 121.06 ? CI UMQ 401 J 1 HETATM 32 C CJ UMQ . . . DA 4 -48.037 4.602 -55.791 1 121.63 ? CJ UMQ 401 J 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 76 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #