data_6ST3 # _model_server_result.job_id yTLYQbEk0RSSOVX1ns9wdg _model_server_result.datetime_utc '2025-01-16 21:53:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6st3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 6ST3 # _exptl.entry_id 6ST3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ST3 _cell.length_a 72.87 _cell.length_b 80.58 _cell.length_c 83.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ST3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc4 C N05 LUW . A LUW 601 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc5 C N08 LUW . A LUW 601 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc6 E MN MN . A MN 603 1_555 I O HOH . A HOH 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc7 B NE2 HIS 139 B HIS 313 1_555 F MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc8 B OD1 ASP 141 B ASP 315 1_555 F MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc9 B NE2 HIS 200 B HIS 374 1_555 F MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc10 F MN MN . B MN 501 1_555 G N05 LUW . B LUW 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc11 F MN MN . B MN 501 1_555 G N07 LUW . B LUW 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc12 F MN MN . B MN 501 1_555 G N08 LUW . B LUW 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc13 F MN MN . B MN 501 1_555 J O HOH . B HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ST3 _atom_sites.fract_transf_matrix[1][1] 0.013723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01241 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LUW A 1 601 601 LUW 202 . D 3 FMT A 1 602 701 FMT FMT . E 4 MN A 1 603 501 MN MN . F 4 MN B 1 501 501 MN MN . G 2 LUW B 1 502 601 LUW 202 . H 3 FMT B 1 503 701 FMT FMT . I 5 HOH A 1 701 82 HOH HOH . I 5 HOH A 2 702 85 HOH HOH . I 5 HOH A 3 703 6 HOH HOH . I 5 HOH A 4 704 104 HOH HOH . I 5 HOH A 5 705 18 HOH HOH . I 5 HOH A 6 706 86 HOH HOH . I 5 HOH A 7 707 105 HOH HOH . I 5 HOH A 8 708 3 HOH HOH . I 5 HOH A 9 709 109 HOH HOH . I 5 HOH A 10 710 107 HOH HOH . I 5 HOH A 11 711 128 HOH HOH . I 5 HOH A 12 712 7 HOH HOH . I 5 HOH A 13 713 111 HOH HOH . I 5 HOH A 14 714 159 HOH HOH . I 5 HOH A 15 715 99 HOH HOH . I 5 HOH A 16 716 5 HOH HOH . I 5 HOH A 17 717 34 HOH HOH . I 5 HOH A 18 718 28 HOH HOH . I 5 HOH A 19 719 62 HOH HOH . I 5 HOH A 20 720 165 HOH HOH . I 5 HOH A 21 721 106 HOH HOH . I 5 HOH A 22 722 20 HOH HOH . I 5 HOH A 23 723 162 HOH HOH . I 5 HOH A 24 724 113 HOH HOH . I 5 HOH A 25 725 74 HOH HOH . I 5 HOH A 26 726 76 HOH HOH . I 5 HOH A 27 727 116 HOH HOH . I 5 HOH A 28 728 97 HOH HOH . I 5 HOH A 29 729 12 HOH HOH . I 5 HOH A 30 730 64 HOH HOH . I 5 HOH A 31 731 103 HOH HOH . I 5 HOH A 32 732 14 HOH HOH . I 5 HOH A 33 733 120 HOH HOH . I 5 HOH A 34 734 93 HOH HOH . I 5 HOH A 35 735 60 HOH HOH . I 5 HOH A 36 736 124 HOH HOH . I 5 HOH A 37 737 66 HOH HOH . I 5 HOH A 38 738 9 HOH HOH . I 5 HOH A 39 739 98 HOH HOH . I 5 HOH A 40 740 58 HOH HOH . I 5 HOH A 41 741 65 HOH HOH . I 5 HOH A 42 742 126 HOH HOH . I 5 HOH A 43 743 49 HOH HOH . I 5 HOH A 44 744 84 HOH HOH . I 5 HOH A 45 745 101 HOH HOH . I 5 HOH A 46 746 51 HOH HOH . I 5 HOH A 47 747 158 HOH HOH . I 5 HOH A 48 748 25 HOH HOH . I 5 HOH A 49 749 112 HOH HOH . I 5 HOH A 50 750 127 HOH HOH . I 5 HOH A 51 751 110 HOH HOH . I 5 HOH A 52 752 114 HOH HOH . I 5 HOH A 53 753 45 HOH HOH . I 5 HOH A 54 754 166 HOH HOH . I 5 HOH A 55 755 83 HOH HOH . I 5 HOH A 56 756 115 HOH HOH . I 5 HOH A 57 757 80 HOH HOH . I 5 HOH A 58 758 122 HOH HOH . J 5 HOH B 1 601 160 HOH HOH . J 5 HOH B 2 602 41 HOH HOH . J 5 HOH B 3 603 130 HOH HOH . J 5 HOH B 4 604 161 HOH HOH . J 5 HOH B 5 605 163 HOH HOH . J 5 HOH B 6 606 33 HOH HOH . J 5 HOH B 7 607 92 HOH HOH . J 5 HOH B 8 608 29 HOH HOH . J 5 HOH B 9 609 89 HOH HOH . J 5 HOH B 10 610 13 HOH HOH . J 5 HOH B 11 611 50 HOH HOH . J 5 HOH B 12 612 4 HOH HOH . J 5 HOH B 13 613 73 HOH HOH . J 5 HOH B 14 614 55 HOH HOH . J 5 HOH B 15 615 78 HOH HOH . J 5 HOH B 16 616 134 HOH HOH . J 5 HOH B 17 617 167 HOH HOH . J 5 HOH B 18 618 15 HOH HOH . J 5 HOH B 19 619 21 HOH HOH . J 5 HOH B 20 620 19 HOH HOH . J 5 HOH B 21 621 32 HOH HOH . J 5 HOH B 22 622 150 HOH HOH . J 5 HOH B 23 623 37 HOH HOH . J 5 HOH B 24 624 39 HOH HOH . J 5 HOH B 25 625 17 HOH HOH . J 5 HOH B 26 626 1 HOH HOH . J 5 HOH B 27 627 27 HOH HOH . J 5 HOH B 28 628 10 HOH HOH . J 5 HOH B 29 629 148 HOH HOH . J 5 HOH B 30 630 22 HOH HOH . J 5 HOH B 31 631 23 HOH HOH . J 5 HOH B 32 632 142 HOH HOH . J 5 HOH B 33 633 46 HOH HOH . J 5 HOH B 34 634 88 HOH HOH . J 5 HOH B 35 635 26 HOH HOH . J 5 HOH B 36 636 75 HOH HOH . J 5 HOH B 37 637 70 HOH HOH . J 5 HOH B 38 638 138 HOH HOH . J 5 HOH B 39 639 11 HOH HOH . J 5 HOH B 40 640 94 HOH HOH . J 5 HOH B 41 641 56 HOH HOH . J 5 HOH B 42 642 38 HOH HOH . J 5 HOH B 43 643 52 HOH HOH . J 5 HOH B 44 644 136 HOH HOH . J 5 HOH B 45 645 137 HOH HOH . J 5 HOH B 46 646 141 HOH HOH . J 5 HOH B 47 647 87 HOH HOH . J 5 HOH B 48 648 67 HOH HOH . J 5 HOH B 49 649 16 HOH HOH . J 5 HOH B 50 650 90 HOH HOH . J 5 HOH B 51 651 77 HOH HOH . J 5 HOH B 52 652 147 HOH HOH . J 5 HOH B 53 653 155 HOH HOH . J 5 HOH B 54 654 154 HOH HOH . J 5 HOH B 55 655 91 HOH HOH . J 5 HOH B 56 656 108 HOH HOH . J 5 HOH B 57 657 79 HOH HOH . J 5 HOH B 58 658 143 HOH HOH . J 5 HOH B 59 659 152 HOH HOH . J 5 HOH B 60 660 164 HOH HOH . J 5 HOH B 61 661 144 HOH HOH . J 5 HOH B 62 662 135 HOH HOH . J 5 HOH B 63 663 145 HOH HOH . J 5 HOH B 64 664 30 HOH HOH . J 5 HOH B 65 665 156 HOH HOH . J 5 HOH B 66 666 132 HOH HOH . J 5 HOH B 67 667 24 HOH HOH . J 5 HOH B 68 668 40 HOH HOH . J 5 HOH B 69 669 72 HOH HOH . J 5 HOH B 70 670 133 HOH HOH . J 5 HOH B 71 671 47 HOH HOH . J 5 HOH B 72 672 131 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 3.573 _atom_site.Cartn_y 26.197 _atom_site.Cartn_z 25.69 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 603 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #