data_6STG # _model_server_result.job_id '_llCrOfSGGqkhGzrEUoCiA' _model_server_result.datetime_utc '2024-11-15 05:45:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6stg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 6STG # _exptl.entry_id 6STG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.97 _cell.angle_gamma 90 _cell.entry_id 6STG _cell.length_a 34.92 _cell.length_b 93.72 _cell.length_c 56.12 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6STG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 106 A ALA 110 1_555 A N SEP 107 A SEP 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C SEP 107 A SEP 111 1_555 A N ALA 108 A ALA 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 B C ALA 106 B ALA 110 1_555 B N SEP 107 B SEP 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 B C SEP 107 B SEP 111 1_555 B N ALA 108 B ALA 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? metalc ? metalc1 A OG1 THR 18 A THR 22 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc2 A OG1 THR 36 A THR 40 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc3 C O2G GNP . A GNP 901 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc4 C O2B GNP . A GNP 901 1_555 D MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc5 B OG1 THR 18 B THR 22 1_555 F MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc6 B OG1 THR 36 B THR 40 1_555 F MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc7 E O1G GNP . B GNP 901 1_555 F MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc8 E O2B GNP . B GNP 901 1_555 F MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 6STG _atom_sites.fract_transf_matrix[1][1] 0.028637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006597 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GNP A 1 901 901 GNP GNP . D 3 MG A 1 902 902 MG MG . E 2 GNP B 1 901 901 GNP GNP . F 3 MG B 1 902 902 MG MG . G 4 TRS B 1 903 2 TRS TRS . H 5 HOH A 1 1001 4 HOH HOH . H 5 HOH A 2 1002 14 HOH HOH . H 5 HOH A 3 1003 8 HOH HOH . H 5 HOH A 4 1004 9 HOH HOH . I 5 HOH B 1 1001 5 HOH HOH . I 5 HOH B 2 1002 7 HOH HOH . I 5 HOH B 3 1003 12 HOH HOH . I 5 HOH B 4 1004 6 HOH HOH . I 5 HOH B 5 1005 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . C 2 -20.648 -13.317 -53.631 1 45.65 ? PG GNP 901 A 1 HETATM 2 O O1G GNP . . . C 2 -21.695 -12.711 -52.732 1 45.21 ? O1G GNP 901 A 1 HETATM 3 O O2G GNP . . . C 2 -19.559 -13.903 -52.773 1 45.91 ? O2G GNP 901 A 1 HETATM 4 O O3G GNP . . . C 2 -21.286 -14.427 -54.426 1 46.5 ? O3G GNP 901 A 1 HETATM 5 N N3B GNP . . . C 2 -20.015 -12.183 -54.618 1 45.14 ? N3B GNP 901 A 1 HETATM 6 P PB GNP . . . C 2 -19.444 -10.722 -54.172 1 44.21 ? PB GNP 901 A 1 HETATM 7 O O1B GNP . . . C 2 -20.537 -9.691 -54.111 1 43.83 ? O1B GNP 901 A 1 HETATM 8 O O2B GNP . . . C 2 -18.485 -10.826 -53.019 1 44.19 ? O2B GNP 901 A 1 HETATM 9 O O3A GNP . . . C 2 -18.554 -10.285 -55.427 1 44.04 ? O3A GNP 901 A 1 HETATM 10 P PA GNP . . . C 2 -16.994 -10.454 -55.748 1 44.02 ? PA GNP 901 A 1 HETATM 11 O O1A GNP . . . C 2 -16.218 -9.614 -54.788 1 43.55 ? O1A GNP 901 A 1 HETATM 12 O O2A GNP . . . C 2 -16.684 -11.912 -55.835 1 44.73 ? O2A GNP 901 A 1 HETATM 13 O O5' GNP . . . C 2 -16.908 -9.799 -57.209 1 43.92 ? O5' GNP 901 A 1 HETATM 14 C C5' GNP . . . C 2 -17.756 -10.314 -58.264 1 44.07 ? C5' GNP 901 A 1 HETATM 15 C C4' GNP . . . C 2 -17.172 -9.938 -59.603 1 44.22 ? C4' GNP 901 A 1 HETATM 16 O O4' GNP . . . C 2 -17.201 -8.493 -59.736 1 43.63 ? O4' GNP 901 A 1 HETATM 17 C C3' GNP . . . C 2 -15.711 -10.345 -59.844 1 44.47 ? C3' GNP 901 A 1 HETATM 18 O O3' GNP . . . C 2 -15.49 -10.711 -61.2 1 45.21 ? O3' GNP 901 A 1 HETATM 19 C C2' GNP . . . C 2 -14.939 -9.07 -59.5 1 43.87 ? C2' GNP 901 A 1 HETATM 20 O O2' GNP . . . C 2 -13.694 -8.991 -60.159 1 44.23 ? O2' GNP 901 A 1 HETATM 21 C C1' GNP . . . C 2 -15.906 -8.002 -59.997 1 43.58 ? C1' GNP 901 A 1 HETATM 22 N N9 GNP . . . C 2 -15.751 -6.721 -59.321 1 42.97 ? N9 GNP 901 A 1 HETATM 23 C C8 GNP . . . C 2 -15.831 -6.496 -57.97 1 42.45 ? C8 GNP 901 A 1 HETATM 24 N N7 GNP . . . C 2 -15.643 -5.242 -57.64 1 42.14 ? N7 GNP 901 A 1 HETATM 25 C C5 GNP . . . C 2 -15.423 -4.601 -58.852 1 42.46 ? C5 GNP 901 A 1 HETATM 26 C C6 GNP . . . C 2 -15.161 -3.235 -59.125 1 42.47 ? C6 GNP 901 A 1 HETATM 27 O O6 GNP . . . C 2 -15.066 -2.298 -58.32 1 42.12 ? O6 GNP 901 A 1 HETATM 28 N N1 GNP . . . C 2 -14.997 -3.01 -60.493 1 43.02 ? N1 GNP 901 A 1 HETATM 29 C C2 GNP . . . C 2 -15.076 -3.971 -61.472 1 43.42 ? C2 GNP 901 A 1 HETATM 30 N N2 GNP . . . C 2 -14.894 -3.562 -62.735 1 43.97 ? N2 GNP 901 A 1 HETATM 31 N N3 GNP . . . C 2 -15.325 -5.257 -61.221 1 43.43 ? N3 GNP 901 A 1 HETATM 32 C C4 GNP . . . C 2 -15.486 -5.5 -59.896 1 42.96 ? C4 GNP 901 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #