data_6STH # _model_server_result.job_id nHjY8jQRXG2SkVJjO9LkqQ _model_server_result.datetime_utc '2024-11-23 05:04:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sth # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":102}' # _entry.id 6STH # _exptl.entry_id 6STH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6STH _cell.length_a 60.604 _cell.length_b 60.604 _cell.length_c 59.3 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6STH _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1,2,4 B,H,I,J,K,L,N 2 1,3,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -y+2,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 121.208 0 0 3 'crystal symmetry operation' 2_765 -y+2,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 90.906 52.484604 0 4 'crystal symmetry operation' 3_775 -x+y+2,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 60.604 104.969207 0 5 'crystal symmetry operation' 3_675 -x+y+1,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 104.969207 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N ? 2 I N N ? 2 J N N ? 2 K N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 281 n n C1 C2 GOL sing 282 n n C1 H11 GOL sing 283 n n C1 H12 GOL sing 284 n n O1 HO1 GOL sing 285 n n C2 O2 GOL sing 286 n n C2 C3 GOL sing 287 n n C2 H2 GOL sing 288 n n O2 HO2 GOL sing 289 n n C3 O3 GOL sing 290 n n C3 H31 GOL sing 291 n n C3 H32 GOL sing 292 n n O3 HO3 GOL sing 293 n n # _atom_sites.entry_id 6STH _atom_sites.fract_transf_matrix[1][1] 0.016501 _atom_sites.fract_transf_matrix[1][2] 0.009527 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 101 101 GOL GOL . D 2 GOL A 1 102 201 GOL GOL . E 3 SO4 A 1 103 2 SO4 SO4 . F 4 EVB A 1 104 201 EVB EVB . G 2 GOL A 1 105 601 GOL GOL . H 4 EVB B 1 101 101 EVB EVB . I 2 GOL B 1 102 301 GOL GOL . J 2 GOL B 1 103 401 GOL GOL . K 2 GOL B 1 104 501 GOL GOL . L 3 SO4 B 1 105 1 SO4 SO4 . M 5 HOH A 1 201 317 HOH HOH . M 5 HOH A 2 202 145 HOH HOH . M 5 HOH A 3 203 277 HOH HOH . M 5 HOH A 4 204 150 HOH HOH . M 5 HOH A 5 205 215 HOH HOH . M 5 HOH A 6 206 259 HOH HOH . M 5 HOH A 7 207 275 HOH HOH . M 5 HOH A 8 208 113 HOH HOH . M 5 HOH A 9 209 140 HOH HOH . M 5 HOH A 10 210 28 HOH HOH . M 5 HOH A 11 211 222 HOH HOH . M 5 HOH A 12 212 175 HOH HOH . M 5 HOH A 13 213 186 HOH HOH . M 5 HOH A 14 214 269 HOH HOH . M 5 HOH A 15 215 108 HOH HOH . M 5 HOH A 16 216 101 HOH HOH . M 5 HOH A 17 217 60 HOH HOH . M 5 HOH A 18 218 92 HOH HOH . M 5 HOH A 19 219 106 HOH HOH . M 5 HOH A 20 220 83 HOH HOH . M 5 HOH A 21 221 24 HOH HOH . M 5 HOH A 22 222 63 HOH HOH . M 5 HOH A 23 223 9 HOH HOH . M 5 HOH A 24 224 279 HOH HOH . M 5 HOH A 25 225 82 HOH HOH . M 5 HOH A 26 226 117 HOH HOH . M 5 HOH A 27 227 194 HOH HOH . M 5 HOH A 28 228 136 HOH HOH . M 5 HOH A 29 229 57 HOH HOH . M 5 HOH A 30 230 58 HOH HOH . M 5 HOH A 31 231 35 HOH HOH . M 5 HOH A 32 232 8 HOH HOH . M 5 HOH A 33 233 221 HOH HOH . M 5 HOH A 34 234 53 HOH HOH . M 5 HOH A 35 235 154 HOH HOH . M 5 HOH A 36 236 120 HOH HOH . M 5 HOH A 37 237 25 HOH HOH . M 5 HOH A 38 238 85 HOH HOH . M 5 HOH A 39 239 74 HOH HOH . M 5 HOH A 40 240 163 HOH HOH . M 5 HOH A 41 241 115 HOH HOH . M 5 HOH A 42 242 161 HOH HOH . M 5 HOH A 43 243 27 HOH HOH . M 5 HOH A 44 244 26 HOH HOH . M 5 HOH A 45 245 180 HOH HOH . M 5 HOH A 46 246 276 HOH HOH . M 5 HOH A 47 247 30 HOH HOH . M 5 HOH A 48 248 146 HOH HOH . M 5 HOH A 49 249 20 HOH HOH . M 5 HOH A 50 250 126 HOH HOH . M 5 HOH A 51 251 237 HOH HOH . M 5 HOH A 52 252 55 HOH HOH . M 5 HOH A 53 253 23 HOH HOH . M 5 HOH A 54 254 95 HOH HOH . M 5 HOH A 55 255 139 HOH HOH . M 5 HOH A 56 256 32 HOH HOH . M 5 HOH A 57 257 76 HOH HOH . M 5 HOH A 58 258 270 HOH HOH . M 5 HOH A 59 259 87 HOH HOH . M 5 HOH A 60 260 39 HOH HOH . M 5 HOH A 61 261 6 HOH HOH . M 5 HOH A 62 262 34 HOH HOH . M 5 HOH A 63 263 78 HOH HOH . M 5 HOH A 64 264 46 HOH HOH . M 5 HOH A 65 265 47 HOH HOH . M 5 HOH A 66 266 69 HOH HOH . M 5 HOH A 67 267 128 HOH HOH . M 5 HOH A 68 268 160 HOH HOH . M 5 HOH A 69 269 179 HOH HOH . M 5 HOH A 70 270 16 HOH HOH . M 5 HOH A 71 271 121 HOH HOH . M 5 HOH A 72 272 29 HOH HOH . M 5 HOH A 73 273 72 HOH HOH . M 5 HOH A 74 274 164 HOH HOH . M 5 HOH A 75 275 68 HOH HOH . M 5 HOH A 76 276 40 HOH HOH . M 5 HOH A 77 277 280 HOH HOH . M 5 HOH A 78 278 94 HOH HOH . M 5 HOH A 79 279 193 HOH HOH . M 5 HOH A 80 280 228 HOH HOH . M 5 HOH A 81 281 258 HOH HOH . M 5 HOH A 82 282 246 HOH HOH . M 5 HOH A 83 283 97 HOH HOH . M 5 HOH A 84 284 218 HOH HOH . M 5 HOH A 85 285 278 HOH HOH . M 5 HOH A 86 286 267 HOH HOH . M 5 HOH A 87 287 96 HOH HOH . M 5 HOH A 88 288 216 HOH HOH . M 5 HOH A 89 289 204 HOH HOH . M 5 HOH A 90 290 105 HOH HOH . M 5 HOH A 91 291 104 HOH HOH . M 5 HOH A 92 292 189 HOH HOH . M 5 HOH A 93 293 99 HOH HOH . M 5 HOH A 94 294 296 HOH HOH . M 5 HOH A 95 295 208 HOH HOH . M 5 HOH A 96 296 281 HOH HOH . M 5 HOH A 97 297 21 HOH HOH . M 5 HOH A 98 298 170 HOH HOH . M 5 HOH A 99 299 158 HOH HOH . M 5 HOH A 100 300 195 HOH HOH . M 5 HOH A 101 301 188 HOH HOH . M 5 HOH A 102 302 67 HOH HOH . M 5 HOH A 103 303 37 HOH HOH . M 5 HOH A 104 304 226 HOH HOH . M 5 HOH A 105 305 316 HOH HOH . M 5 HOH A 106 306 271 HOH HOH . M 5 HOH A 107 307 44 HOH HOH . M 5 HOH A 108 308 155 HOH HOH . M 5 HOH A 109 309 142 HOH HOH . M 5 HOH A 110 310 212 HOH HOH . M 5 HOH A 111 311 210 HOH HOH . M 5 HOH A 112 312 244 HOH HOH . M 5 HOH A 113 313 264 HOH HOH . M 5 HOH A 114 314 114 HOH HOH . M 5 HOH A 115 315 102 HOH HOH . M 5 HOH A 116 316 88 HOH HOH . M 5 HOH A 117 317 268 HOH HOH . M 5 HOH A 118 318 134 HOH HOH . M 5 HOH A 119 319 122 HOH HOH . M 5 HOH A 120 320 141 HOH HOH . M 5 HOH A 121 321 110 HOH HOH . M 5 HOH A 122 322 109 HOH HOH . M 5 HOH A 123 323 250 HOH HOH . M 5 HOH A 124 324 11 HOH HOH . M 5 HOH A 125 325 129 HOH HOH . M 5 HOH A 126 326 173 HOH HOH . M 5 HOH A 127 327 265 HOH HOH . M 5 HOH A 128 328 273 HOH HOH . M 5 HOH A 129 329 274 HOH HOH . N 5 HOH B 1 201 272 HOH HOH . N 5 HOH B 2 202 90 HOH HOH . N 5 HOH B 3 203 137 HOH HOH . N 5 HOH B 4 204 98 HOH HOH . N 5 HOH B 5 205 15 HOH HOH . N 5 HOH B 6 206 299 HOH HOH . N 5 HOH B 7 207 42 HOH HOH . N 5 HOH B 8 208 242 HOH HOH . N 5 HOH B 9 209 283 HOH HOH . N 5 HOH B 10 210 89 HOH HOH . N 5 HOH B 11 211 70 HOH HOH . N 5 HOH B 12 212 190 HOH HOH . N 5 HOH B 13 213 116 HOH HOH . N 5 HOH B 14 214 12 HOH HOH . N 5 HOH B 15 215 100 HOH HOH . N 5 HOH B 16 216 65 HOH HOH . N 5 HOH B 17 217 127 HOH HOH . N 5 HOH B 18 218 1 HOH HOH . N 5 HOH B 19 219 93 HOH HOH . N 5 HOH B 20 220 38 HOH HOH . N 5 HOH B 21 221 119 HOH HOH . N 5 HOH B 22 222 43 HOH HOH . N 5 HOH B 23 223 17 HOH HOH . N 5 HOH B 24 224 313 HOH HOH . N 5 HOH B 25 225 81 HOH HOH . N 5 HOH B 26 226 13 HOH HOH . N 5 HOH B 27 227 79 HOH HOH . N 5 HOH B 28 228 112 HOH HOH . N 5 HOH B 29 229 130 HOH HOH . N 5 HOH B 30 230 80 HOH HOH . N 5 HOH B 31 231 4 HOH HOH . N 5 HOH B 32 232 132 HOH HOH . N 5 HOH B 33 233 14 HOH HOH . N 5 HOH B 34 234 91 HOH HOH . N 5 HOH B 35 235 41 HOH HOH . N 5 HOH B 36 236 286 HOH HOH . N 5 HOH B 37 237 185 HOH HOH . N 5 HOH B 38 238 152 HOH HOH . N 5 HOH B 39 239 149 HOH HOH . N 5 HOH B 40 240 249 HOH HOH . N 5 HOH B 41 241 156 HOH HOH . N 5 HOH B 42 242 3 HOH HOH . N 5 HOH B 43 243 49 HOH HOH . N 5 HOH B 44 244 304 HOH HOH . N 5 HOH B 45 245 19 HOH HOH . N 5 HOH B 46 246 182 HOH HOH . N 5 HOH B 47 247 248 HOH HOH . N 5 HOH B 48 248 2 HOH HOH . N 5 HOH B 49 249 48 HOH HOH . N 5 HOH B 50 250 111 HOH HOH . N 5 HOH B 51 251 66 HOH HOH . N 5 HOH B 52 252 239 HOH HOH . N 5 HOH B 53 253 199 HOH HOH . N 5 HOH B 54 254 86 HOH HOH . N 5 HOH B 55 255 202 HOH HOH . N 5 HOH B 56 256 62 HOH HOH . N 5 HOH B 57 257 73 HOH HOH . N 5 HOH B 58 258 77 HOH HOH . N 5 HOH B 59 259 287 HOH HOH . N 5 HOH B 60 260 52 HOH HOH . N 5 HOH B 61 261 157 HOH HOH . N 5 HOH B 62 262 56 HOH HOH . N 5 HOH B 63 263 233 HOH HOH . N 5 HOH B 64 264 103 HOH HOH . N 5 HOH B 65 265 18 HOH HOH . N 5 HOH B 66 266 300 HOH HOH . N 5 HOH B 67 267 51 HOH HOH . N 5 HOH B 68 268 75 HOH HOH . N 5 HOH B 69 269 131 HOH HOH . N 5 HOH B 70 270 168 HOH HOH . N 5 HOH B 71 271 64 HOH HOH . N 5 HOH B 72 272 176 HOH HOH . N 5 HOH B 73 273 187 HOH HOH . N 5 HOH B 74 274 50 HOH HOH . N 5 HOH B 75 275 225 HOH HOH . N 5 HOH B 76 276 184 HOH HOH . N 5 HOH B 77 277 71 HOH HOH . N 5 HOH B 78 278 284 HOH HOH . N 5 HOH B 79 279 220 HOH HOH . N 5 HOH B 80 280 5 HOH HOH . N 5 HOH B 81 281 293 HOH HOH . N 5 HOH B 82 282 54 HOH HOH . N 5 HOH B 83 283 223 HOH HOH . N 5 HOH B 84 284 288 HOH HOH . N 5 HOH B 85 285 183 HOH HOH . N 5 HOH B 86 286 162 HOH HOH . N 5 HOH B 87 287 178 HOH HOH . N 5 HOH B 88 288 147 HOH HOH . N 5 HOH B 89 289 203 HOH HOH . N 5 HOH B 90 290 61 HOH HOH . N 5 HOH B 91 291 177 HOH HOH . N 5 HOH B 92 292 10 HOH HOH . N 5 HOH B 93 293 256 HOH HOH . N 5 HOH B 94 294 144 HOH HOH . N 5 HOH B 95 295 205 HOH HOH . N 5 HOH B 96 296 172 HOH HOH . N 5 HOH B 97 297 118 HOH HOH . N 5 HOH B 98 298 282 HOH HOH . N 5 HOH B 99 299 302 HOH HOH . N 5 HOH B 100 300 298 HOH HOH . N 5 HOH B 101 301 213 HOH HOH . N 5 HOH B 102 302 219 HOH HOH . N 5 HOH B 103 303 151 HOH HOH . N 5 HOH B 104 304 307 HOH HOH . N 5 HOH B 105 305 217 HOH HOH . N 5 HOH B 106 306 289 HOH HOH . N 5 HOH B 107 307 201 HOH HOH . N 5 HOH B 108 308 308 HOH HOH . N 5 HOH B 109 309 254 HOH HOH . N 5 HOH B 110 310 124 HOH HOH . N 5 HOH B 111 311 310 HOH HOH . N 5 HOH B 112 312 285 HOH HOH . N 5 HOH B 113 313 290 HOH HOH . N 5 HOH B 114 314 33 HOH HOH . N 5 HOH B 115 315 232 HOH HOH . N 5 HOH B 116 316 301 HOH HOH . N 5 HOH B 117 317 292 HOH HOH . N 5 HOH B 118 318 31 HOH HOH . N 5 HOH B 119 319 181 HOH HOH . N 5 HOH B 120 320 305 HOH HOH . N 5 HOH B 121 321 297 HOH HOH . N 5 HOH B 122 322 291 HOH HOH . N 5 HOH B 123 323 174 HOH HOH . N 5 HOH B 124 324 196 HOH HOH . N 5 HOH B 125 325 36 HOH HOH . N 5 HOH B 126 326 243 HOH HOH . N 5 HOH B 127 327 235 HOH HOH . N 5 HOH B 128 328 206 HOH HOH . N 5 HOH B 129 329 236 HOH HOH . N 5 HOH B 130 330 191 HOH HOH . N 5 HOH B 131 331 211 HOH HOH . N 5 HOH B 132 332 214 HOH HOH . N 5 HOH B 133 333 309 HOH HOH . N 5 HOH B 134 334 192 HOH HOH . N 5 HOH B 135 335 171 HOH HOH . N 5 HOH B 136 336 209 HOH HOH . N 5 HOH B 137 337 230 HOH HOH . N 5 HOH B 138 338 234 HOH HOH . N 5 HOH B 139 339 153 HOH HOH . N 5 HOH B 140 340 84 HOH HOH . N 5 HOH B 141 341 306 HOH HOH . N 5 HOH B 142 342 312 HOH HOH . N 5 HOH B 143 343 227 HOH HOH . N 5 HOH B 144 344 311 HOH HOH . N 5 HOH B 145 345 303 HOH HOH . N 5 HOH B 146 346 294 HOH HOH . N 5 HOH B 147 347 253 HOH HOH . N 5 HOH B 148 348 257 HOH HOH . N 5 HOH B 149 349 107 HOH HOH . N 5 HOH B 150 350 123 HOH HOH . N 5 HOH B 151 351 133 HOH HOH . N 5 HOH B 152 352 200 HOH HOH . N 5 HOH B 153 353 315 HOH HOH . N 5 HOH B 154 354 167 HOH HOH . N 5 HOH B 155 355 138 HOH HOH . N 5 HOH B 156 356 314 HOH HOH . N 5 HOH B 157 357 241 HOH HOH . N 5 HOH B 158 358 295 HOH HOH . N 5 HOH B 159 359 229 HOH HOH . N 5 HOH B 160 360 45 HOH HOH . N 5 HOH B 161 361 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 2 42.656 30.395 50.499 1 45.24 ? C1 GOL 102 B 1 HETATM 2 O O1 GOL . . . I 2 42.282 29.328 49.65 1 51.68 ? O1 GOL 102 B 1 HETATM 3 C C2 GOL . . . I 2 42.108 30.028 51.888 1 49.61 ? C2 GOL 102 B 1 HETATM 4 O O2 GOL . . . I 2 42.717 28.908 52.43 1 75.32 ? O2 GOL 102 B 1 HETATM 5 C C3 GOL . . . I 2 42.339 31.273 52.759 1 52.12 ? C3 GOL 102 B 1 HETATM 6 O O3 GOL . . . I 2 41.651 31.057 53.964 1 65.28 ? O3 GOL 102 B 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #