data_6SU4 # _model_server_result.job_id VHyXI3HTn9rCw_nfML64ng _model_server_result.datetime_utc '2024-10-10 21:22:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6su4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":605}' # _entry.id 6SU4 # _exptl.entry_id 6SU4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.02 _cell.angle_gamma 90 _cell.entry_id 6SU4 _cell.length_a 56.177 _cell.length_b 60.744 _cell.length_c 92.913 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SU4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 Y N N ? 5 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 241 X LYS 241 1_555 W C15 RET . X RET 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 B NZ LYS 241 A LYS 241 1_555 MA C15 RET . A RET 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 370 n n C10 C9 OLC doub 371 n n C10 C11 OLC sing 372 n n C9 C8 OLC sing 373 n n C17 C16 OLC sing 374 z n C11 C12 OLC sing 375 n n C8 C7 OLC sing 376 n n C24 C22 OLC sing 377 n n C24 O25 OLC sing 378 n n C16 C15 OLC sing 379 n n C12 C13 OLC sing 380 n n C7 C6 OLC sing 381 n n C15 C14 OLC sing 382 n n C13 C14 OLC sing 383 n n C6 C5 OLC sing 384 n n C5 C4 OLC sing 385 n n C4 C3 OLC sing 386 n n C3 C2 OLC sing 387 n n C2 C1 OLC sing 388 n n C21 C22 OLC sing 389 n n C21 O20 OLC sing 390 n n C1 O19 OLC doub 391 n n C1 O20 OLC sing 392 n n C22 O23 OLC sing 393 n n C18 H18 OLC sing 394 n n C18 H18A OLC sing 395 n n C18 H18B OLC sing 396 n n C10 H10 OLC sing 397 n n C9 H9 OLC sing 398 n n C17 H17 OLC sing 399 n n C17 H17A OLC sing 400 n n C11 H11 OLC sing 401 n n C11 H11A OLC sing 402 n n C8 H8 OLC sing 403 n n C8 H8A OLC sing 404 n n C24 H24 OLC sing 405 n n C24 H24A OLC sing 406 n n C16 H16 OLC sing 407 n n C16 H16A OLC sing 408 n n C12 H12 OLC sing 409 n n C12 H12A OLC sing 410 n n C7 H7 OLC sing 411 n n C7 H7A OLC sing 412 n n C15 H15 OLC sing 413 n n C15 H15A OLC sing 414 n n C13 H13 OLC sing 415 n n C13 H13A OLC sing 416 n n C6 H6 OLC sing 417 n n C6 H6A OLC sing 418 n n C14 H14 OLC sing 419 n n C14 H14A OLC sing 420 n n C5 H5 OLC sing 421 n n C5 H5A OLC sing 422 n n C4 H4 OLC sing 423 n n C4 H4A OLC sing 424 n n C3 H3 OLC sing 425 n n C3 H3A OLC sing 426 n n C2 H2 OLC sing 427 n n C2 H2A OLC sing 428 n n C21 H21 OLC sing 429 n n C21 H21A OLC sing 430 n n C22 H22 OLC sing 431 n n O25 HO25 OLC sing 432 n n O23 HO23 OLC sing 433 n n # _atom_sites.entry_id 6SU4 _atom_sites.fract_transf_matrix[1][1] 0.017801 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000628 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT X 1 601 601 ACT ACT . D 3 OLA X 1 602 701 OLA OLA . E 4 GOL X 1 603 801 GOL GOL . F 5 OLC X 1 604 1001 OLC OLC . G 5 OLC X 1 605 1101 OLC OLC . H 6 LFA X 1 606 3 LFA LFA . I 6 LFA X 1 607 12 LFA LFA . J 6 LFA X 1 608 13 LFA LFA . K 6 LFA X 1 609 16 LFA LFA . L 6 LFA X 1 610 17 LFA LFA . M 6 LFA X 1 611 19 LFA LFA . N 6 LFA X 1 612 21 LFA LFA . O 6 LFA X 1 613 25 LFA LFA . P 6 LFA X 1 614 26 LFA LFA . Q 6 LFA X 1 615 27 LFA LFA . R 6 LFA X 1 616 29 LFA LFA . S 6 LFA X 1 617 31 LFA LFA . T 6 LFA X 1 618 32 LFA LFA . U 6 LFA X 1 619 33 LFA LFA . V 7 SO4 X 1 620 1 SO4 SO4 . W 8 RET X 1 621 241 RET LYR . X 2 ACT A 1 701 701 ACT ACT . Y 5 OLC A 1 702 901 OLC OLC . Z 5 OLC A 1 703 1001 OLC OLC . AA 3 OLA A 1 704 1101 OLA OLA . BA 3 OLA A 1 705 1201 OLA OLA . CA 6 LFA A 1 706 15 LFA LFA . DA 6 LFA A 1 707 20 LFA LFA . EA 6 LFA A 1 708 22 LFA LFA . FA 6 LFA A 1 709 23 LFA LFA . GA 6 LFA A 1 710 24 LFA LFA . HA 6 LFA A 1 711 28 LFA LFA . IA 6 LFA A 1 712 30 LFA LFA . JA 6 LFA A 1 713 34 LFA LFA . KA 6 LFA A 1 714 35 LFA LFA . LA 7 SO4 A 1 715 2 SO4 SO4 . MA 8 RET A 1 716 241 RET LYR . NA 9 HOH X 1 701 136 HOH HOH . NA 9 HOH X 2 702 133 HOH HOH . NA 9 HOH X 3 703 157 HOH HOH . NA 9 HOH X 4 704 159 HOH HOH . NA 9 HOH X 5 705 80 HOH HOH . NA 9 HOH X 6 706 119 HOH HOH . NA 9 HOH X 7 707 135 HOH HOH . NA 9 HOH X 8 708 25 HOH HOH . NA 9 HOH X 9 709 151 HOH HOH . NA 9 HOH X 10 710 93 HOH HOH . NA 9 HOH X 11 711 55 HOH HOH . NA 9 HOH X 12 712 27 HOH HOH . NA 9 HOH X 13 713 14 HOH HOH . NA 9 HOH X 14 714 15 HOH HOH . NA 9 HOH X 15 715 132 HOH HOH . NA 9 HOH X 16 716 94 HOH HOH . NA 9 HOH X 17 717 124 HOH HOH . NA 9 HOH X 18 718 4 HOH HOH . NA 9 HOH X 19 719 60 HOH HOH . NA 9 HOH X 20 720 56 HOH HOH . NA 9 HOH X 21 721 44 HOH HOH . NA 9 HOH X 22 722 86 HOH HOH . NA 9 HOH X 23 723 155 HOH HOH . NA 9 HOH X 24 724 141 HOH HOH . NA 9 HOH X 25 725 5 HOH HOH . NA 9 HOH X 26 726 154 HOH HOH . NA 9 HOH X 27 727 91 HOH HOH . NA 9 HOH X 28 728 140 HOH HOH . NA 9 HOH X 29 729 163 HOH HOH . NA 9 HOH X 30 730 46 HOH HOH . NA 9 HOH X 31 731 116 HOH HOH . NA 9 HOH X 32 732 54 HOH HOH . NA 9 HOH X 33 733 92 HOH HOH . NA 9 HOH X 34 734 47 HOH HOH . NA 9 HOH X 35 735 24 HOH HOH . NA 9 HOH X 36 736 78 HOH HOH . NA 9 HOH X 37 737 42 HOH HOH . NA 9 HOH X 38 738 13 HOH HOH . NA 9 HOH X 39 739 45 HOH HOH . NA 9 HOH X 40 740 160 HOH HOH . NA 9 HOH X 41 741 105 HOH HOH . NA 9 HOH X 42 742 21 HOH HOH . NA 9 HOH X 43 743 134 HOH HOH . NA 9 HOH X 44 744 28 HOH HOH . NA 9 HOH X 45 745 2 HOH HOH . NA 9 HOH X 46 746 126 HOH HOH . NA 9 HOH X 47 747 98 HOH HOH . NA 9 HOH X 48 748 36 HOH HOH . NA 9 HOH X 49 749 76 HOH HOH . NA 9 HOH X 50 750 11 HOH HOH . NA 9 HOH X 51 751 22 HOH HOH . NA 9 HOH X 52 752 70 HOH HOH . NA 9 HOH X 53 753 101 HOH HOH . NA 9 HOH X 54 754 127 HOH HOH . NA 9 HOH X 55 755 71 HOH HOH . NA 9 HOH X 56 756 43 HOH HOH . NA 9 HOH X 57 757 73 HOH HOH . NA 9 HOH X 58 758 6 HOH HOH . NA 9 HOH X 59 759 83 HOH HOH . NA 9 HOH X 60 760 112 HOH HOH . NA 9 HOH X 61 761 100 HOH HOH . NA 9 HOH X 62 762 130 HOH HOH . NA 9 HOH X 63 763 20 HOH HOH . NA 9 HOH X 64 764 62 HOH HOH . NA 9 HOH X 65 765 26 HOH HOH . NA 9 HOH X 66 766 117 HOH HOH . NA 9 HOH X 67 767 79 HOH HOH . NA 9 HOH X 68 768 145 HOH HOH . NA 9 HOH X 69 769 142 HOH HOH . NA 9 HOH X 70 770 66 HOH HOH . NA 9 HOH X 71 771 150 HOH HOH . NA 9 HOH X 72 772 52 HOH HOH . NA 9 HOH X 73 773 16 HOH HOH . NA 9 HOH X 74 774 85 HOH HOH . NA 9 HOH X 75 775 30 HOH HOH . NA 9 HOH X 76 776 143 HOH HOH . NA 9 HOH X 77 777 12 HOH HOH . NA 9 HOH X 78 778 74 HOH HOH . NA 9 HOH X 79 779 81 HOH HOH . OA 9 HOH A 1 801 146 HOH HOH . OA 9 HOH A 2 802 158 HOH HOH . OA 9 HOH A 3 803 106 HOH HOH . OA 9 HOH A 4 804 17 HOH HOH . OA 9 HOH A 5 805 64 HOH HOH . OA 9 HOH A 6 806 41 HOH HOH . OA 9 HOH A 7 807 138 HOH HOH . OA 9 HOH A 8 808 103 HOH HOH . OA 9 HOH A 9 809 139 HOH HOH . OA 9 HOH A 10 810 39 HOH HOH . OA 9 HOH A 11 811 107 HOH HOH . OA 9 HOH A 12 812 147 HOH HOH . OA 9 HOH A 13 813 113 HOH HOH . OA 9 HOH A 14 814 51 HOH HOH . OA 9 HOH A 15 815 128 HOH HOH . OA 9 HOH A 16 816 75 HOH HOH . OA 9 HOH A 17 817 89 HOH HOH . OA 9 HOH A 18 818 59 HOH HOH . OA 9 HOH A 19 819 72 HOH HOH . OA 9 HOH A 20 820 104 HOH HOH . OA 9 HOH A 21 821 161 HOH HOH . OA 9 HOH A 22 822 10 HOH HOH . OA 9 HOH A 23 823 34 HOH HOH . OA 9 HOH A 24 824 18 HOH HOH . OA 9 HOH A 25 825 57 HOH HOH . OA 9 HOH A 26 826 82 HOH HOH . OA 9 HOH A 27 827 3 HOH HOH . OA 9 HOH A 28 828 8 HOH HOH . OA 9 HOH A 29 829 53 HOH HOH . OA 9 HOH A 30 830 115 HOH HOH . OA 9 HOH A 31 831 111 HOH HOH . OA 9 HOH A 32 832 114 HOH HOH . OA 9 HOH A 33 833 95 HOH HOH . OA 9 HOH A 34 834 37 HOH HOH . OA 9 HOH A 35 835 90 HOH HOH . OA 9 HOH A 36 836 88 HOH HOH . OA 9 HOH A 37 837 33 HOH HOH . OA 9 HOH A 38 838 35 HOH HOH . OA 9 HOH A 39 839 7 HOH HOH . OA 9 HOH A 40 840 1 HOH HOH . OA 9 HOH A 41 841 131 HOH HOH . OA 9 HOH A 42 842 137 HOH HOH . OA 9 HOH A 43 843 31 HOH HOH . OA 9 HOH A 44 844 48 HOH HOH . OA 9 HOH A 45 845 102 HOH HOH . OA 9 HOH A 46 846 38 HOH HOH . OA 9 HOH A 47 847 9 HOH HOH . OA 9 HOH A 48 848 87 HOH HOH . OA 9 HOH A 49 849 153 HOH HOH . OA 9 HOH A 50 850 144 HOH HOH . OA 9 HOH A 51 851 152 HOH HOH . OA 9 HOH A 52 852 99 HOH HOH . OA 9 HOH A 53 853 96 HOH HOH . OA 9 HOH A 54 854 23 HOH HOH . OA 9 HOH A 55 855 49 HOH HOH . OA 9 HOH A 56 856 32 HOH HOH . OA 9 HOH A 57 857 84 HOH HOH . OA 9 HOH A 58 858 77 HOH HOH . OA 9 HOH A 59 859 63 HOH HOH . OA 9 HOH A 60 860 97 HOH HOH . OA 9 HOH A 61 861 129 HOH HOH . OA 9 HOH A 62 862 120 HOH HOH . OA 9 HOH A 63 863 69 HOH HOH . OA 9 HOH A 64 864 40 HOH HOH . OA 9 HOH A 65 865 19 HOH HOH . OA 9 HOH A 66 866 58 HOH HOH . OA 9 HOH A 67 867 108 HOH HOH . OA 9 HOH A 68 868 109 HOH HOH . OA 9 HOH A 69 869 118 HOH HOH . OA 9 HOH A 70 870 121 HOH HOH . OA 9 HOH A 71 871 29 HOH HOH . OA 9 HOH A 72 872 110 HOH HOH . OA 9 HOH A 73 873 156 HOH HOH . OA 9 HOH A 74 874 148 HOH HOH . OA 9 HOH A 75 875 149 HOH HOH . OA 9 HOH A 76 876 122 HOH HOH . OA 9 HOH A 77 877 123 HOH HOH . OA 9 HOH A 78 878 61 HOH HOH . OA 9 HOH A 79 879 125 HOH HOH . OA 9 HOH A 80 880 50 HOH HOH . OA 9 HOH A 81 881 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . G 5 5.538 10.385 20.936 1 42.32 ? C10 OLC 605 X 1 HETATM 2 C C9 OLC . . . G 5 6.401 11.128 20.246 1 40.16 ? C9 OLC 605 X 1 HETATM 3 C C17 OLC . . . G 5 -2.388 8.111 23.158 1 41.5 ? C17 OLC 605 X 1 HETATM 4 C C11 OLC . . . G 5 4.194 10.059 20.338 1 43.85 ? C11 OLC 605 X 1 HETATM 5 C C8 OLC . . . G 5 7.753 11.475 20.827 1 47.18 ? C8 OLC 605 X 1 HETATM 6 C C24 OLC . . . G 5 17.839 10.414 26.848 1 65.74 ? C24 OLC 605 X 1 HETATM 7 C C16 OLC . . . G 5 -0.92 8.243 23.549 1 39.33 ? C16 OLC 605 X 1 HETATM 8 C C12 OLC . . . G 5 3.065 10.366 21.303 1 41.9 ? C12 OLC 605 X 1 HETATM 9 C C7 OLC . . . G 5 7.848 11.05 22.289 1 48.36 ? C7 OLC 605 X 1 HETATM 10 C C15 OLC . . . G 5 0.005 8.232 22.337 1 39.34 ? C15 OLC 605 X 1 HETATM 11 C C13 OLC . . . G 5 2.127 9.171 21.405 1 39.89 ? C13 OLC 605 X 1 HETATM 12 C C6 OLC . . . G 5 8.689 12.031 23.101 1 56.44 ? C6 OLC 605 X 1 HETATM 13 C C14 OLC . . . G 5 0.941 9.431 22.321 1 42.95 ? C14 OLC 605 X 1 HETATM 14 C C5 OLC . . . G 5 9.407 11.328 24.249 1 61.1 ? C5 OLC 605 X 1 HETATM 15 C C4 OLC . . . G 5 10.001 12.32 25.244 1 64.4 ? C4 OLC 605 X 1 HETATM 16 C C3 OLC . . . G 5 11.512 12.14 25.384 1 67.69 ? C3 OLC 605 X 1 HETATM 17 C C2 OLC . . . G 5 11.916 11.923 26.839 1 62.42 ? C2 OLC 605 X 1 HETATM 18 C C21 OLC . . . G 5 15.657 11.617 27.033 1 66.12 ? C21 OLC 605 X 1 HETATM 19 C C1 OLC . . . G 5 13.305 12.462 27.095 1 63.49 ? C1 OLC 605 X 1 HETATM 20 C C22 OLC . . . G 5 16.473 10.431 27.538 1 58.15 ? C22 OLC 605 X 1 HETATM 21 O O19 OLC . . . G 5 13.565 13.632 26.877 1 76.95 ? O19 OLC 605 X 1 HETATM 22 O O25 OLC . . . G 5 17.932 9.346 25.887 1 56.02 ? O25 OLC 605 X 1 HETATM 23 O O23 OLC . . . G 5 16.624 10.519 28.967 1 38.69 ? O23 OLC 605 X 1 HETATM 24 O O20 OLC . . . G 5 14.354 11.599 27.616 1 66.82 ? O20 OLC 605 X 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 24 #