data_6SU4 # _model_server_result.job_id PW1dF3-xrreqRU_O3AkOUA _model_server_result.datetime_utc '2024-11-23 10:44:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6su4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":621}' # _entry.id 6SU4 # _exptl.entry_id 6SU4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.02 _cell.angle_gamma 90 _cell.entry_id 6SU4 _cell.length_a 56.177 _cell.length_b 60.744 _cell.length_c 92.913 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SU4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 W N N ? 8 MA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 241 X LYS 241 1_555 W C15 RET . X RET 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 B NZ LYS 241 A LYS 241 1_555 MA C15 RET . A RET 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 474 n n C1 C6 RET sing 475 n n C1 C16 RET sing 476 n n C1 C17 RET sing 477 n n C2 C3 RET sing 478 n n C2 H21 RET sing 479 n n C2 H22 RET sing 480 n n C3 C4 RET sing 481 n n C3 H31 RET sing 482 n n C3 H32 RET sing 483 n n C4 C5 RET sing 484 n n C4 H41 RET sing 485 n n C4 H42 RET sing 486 n n C5 C6 RET doub 487 n n C5 C18 RET sing 488 n n C6 C7 RET sing 489 n n C7 C8 RET doub 490 e n C7 H7 RET sing 491 n n C8 C9 RET sing 492 n n C8 H8 RET sing 493 n n C9 C10 RET doub 494 e n C9 C19 RET sing 495 n n C10 C11 RET sing 496 n n C10 H10 RET sing 497 n n C11 C12 RET doub 498 e n C11 H11 RET sing 499 n n C12 C13 RET sing 500 n n C12 H12 RET sing 501 n n C13 C14 RET doub 502 e n C13 C20 RET sing 503 n n C14 C15 RET sing 504 n n C14 H14 RET sing 505 n n C15 O1 RET doub 506 n n C15 H15 RET sing 507 n n C16 H161 RET sing 508 n n C16 H162 RET sing 509 n n C16 H163 RET sing 510 n n C17 H171 RET sing 511 n n C17 H172 RET sing 512 n n C17 H173 RET sing 513 n n C18 H181 RET sing 514 n n C18 H182 RET sing 515 n n C18 H183 RET sing 516 n n C19 H191 RET sing 517 n n C19 H192 RET sing 518 n n C19 H193 RET sing 519 n n C20 H201 RET sing 520 n n C20 H202 RET sing 521 n n C20 H203 RET sing 522 n n # _atom_sites.entry_id 6SU4 _atom_sites.fract_transf_matrix[1][1] 0.017801 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000628 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT X 1 601 601 ACT ACT . D 3 OLA X 1 602 701 OLA OLA . E 4 GOL X 1 603 801 GOL GOL . F 5 OLC X 1 604 1001 OLC OLC . G 5 OLC X 1 605 1101 OLC OLC . H 6 LFA X 1 606 3 LFA LFA . I 6 LFA X 1 607 12 LFA LFA . J 6 LFA X 1 608 13 LFA LFA . K 6 LFA X 1 609 16 LFA LFA . L 6 LFA X 1 610 17 LFA LFA . M 6 LFA X 1 611 19 LFA LFA . N 6 LFA X 1 612 21 LFA LFA . O 6 LFA X 1 613 25 LFA LFA . P 6 LFA X 1 614 26 LFA LFA . Q 6 LFA X 1 615 27 LFA LFA . R 6 LFA X 1 616 29 LFA LFA . S 6 LFA X 1 617 31 LFA LFA . T 6 LFA X 1 618 32 LFA LFA . U 6 LFA X 1 619 33 LFA LFA . V 7 SO4 X 1 620 1 SO4 SO4 . W 8 RET X 1 621 241 RET LYR . X 2 ACT A 1 701 701 ACT ACT . Y 5 OLC A 1 702 901 OLC OLC . Z 5 OLC A 1 703 1001 OLC OLC . AA 3 OLA A 1 704 1101 OLA OLA . BA 3 OLA A 1 705 1201 OLA OLA . CA 6 LFA A 1 706 15 LFA LFA . DA 6 LFA A 1 707 20 LFA LFA . EA 6 LFA A 1 708 22 LFA LFA . FA 6 LFA A 1 709 23 LFA LFA . GA 6 LFA A 1 710 24 LFA LFA . HA 6 LFA A 1 711 28 LFA LFA . IA 6 LFA A 1 712 30 LFA LFA . JA 6 LFA A 1 713 34 LFA LFA . KA 6 LFA A 1 714 35 LFA LFA . LA 7 SO4 A 1 715 2 SO4 SO4 . MA 8 RET A 1 716 241 RET LYR . NA 9 HOH X 1 701 136 HOH HOH . NA 9 HOH X 2 702 133 HOH HOH . NA 9 HOH X 3 703 157 HOH HOH . NA 9 HOH X 4 704 159 HOH HOH . NA 9 HOH X 5 705 80 HOH HOH . NA 9 HOH X 6 706 119 HOH HOH . NA 9 HOH X 7 707 135 HOH HOH . NA 9 HOH X 8 708 25 HOH HOH . NA 9 HOH X 9 709 151 HOH HOH . NA 9 HOH X 10 710 93 HOH HOH . NA 9 HOH X 11 711 55 HOH HOH . NA 9 HOH X 12 712 27 HOH HOH . NA 9 HOH X 13 713 14 HOH HOH . NA 9 HOH X 14 714 15 HOH HOH . NA 9 HOH X 15 715 132 HOH HOH . NA 9 HOH X 16 716 94 HOH HOH . NA 9 HOH X 17 717 124 HOH HOH . NA 9 HOH X 18 718 4 HOH HOH . NA 9 HOH X 19 719 60 HOH HOH . NA 9 HOH X 20 720 56 HOH HOH . NA 9 HOH X 21 721 44 HOH HOH . NA 9 HOH X 22 722 86 HOH HOH . NA 9 HOH X 23 723 155 HOH HOH . NA 9 HOH X 24 724 141 HOH HOH . NA 9 HOH X 25 725 5 HOH HOH . NA 9 HOH X 26 726 154 HOH HOH . NA 9 HOH X 27 727 91 HOH HOH . NA 9 HOH X 28 728 140 HOH HOH . NA 9 HOH X 29 729 163 HOH HOH . NA 9 HOH X 30 730 46 HOH HOH . NA 9 HOH X 31 731 116 HOH HOH . NA 9 HOH X 32 732 54 HOH HOH . NA 9 HOH X 33 733 92 HOH HOH . NA 9 HOH X 34 734 47 HOH HOH . NA 9 HOH X 35 735 24 HOH HOH . NA 9 HOH X 36 736 78 HOH HOH . NA 9 HOH X 37 737 42 HOH HOH . NA 9 HOH X 38 738 13 HOH HOH . NA 9 HOH X 39 739 45 HOH HOH . NA 9 HOH X 40 740 160 HOH HOH . NA 9 HOH X 41 741 105 HOH HOH . NA 9 HOH X 42 742 21 HOH HOH . NA 9 HOH X 43 743 134 HOH HOH . NA 9 HOH X 44 744 28 HOH HOH . NA 9 HOH X 45 745 2 HOH HOH . NA 9 HOH X 46 746 126 HOH HOH . NA 9 HOH X 47 747 98 HOH HOH . NA 9 HOH X 48 748 36 HOH HOH . NA 9 HOH X 49 749 76 HOH HOH . NA 9 HOH X 50 750 11 HOH HOH . NA 9 HOH X 51 751 22 HOH HOH . NA 9 HOH X 52 752 70 HOH HOH . NA 9 HOH X 53 753 101 HOH HOH . NA 9 HOH X 54 754 127 HOH HOH . NA 9 HOH X 55 755 71 HOH HOH . NA 9 HOH X 56 756 43 HOH HOH . NA 9 HOH X 57 757 73 HOH HOH . NA 9 HOH X 58 758 6 HOH HOH . NA 9 HOH X 59 759 83 HOH HOH . NA 9 HOH X 60 760 112 HOH HOH . NA 9 HOH X 61 761 100 HOH HOH . NA 9 HOH X 62 762 130 HOH HOH . NA 9 HOH X 63 763 20 HOH HOH . NA 9 HOH X 64 764 62 HOH HOH . NA 9 HOH X 65 765 26 HOH HOH . NA 9 HOH X 66 766 117 HOH HOH . NA 9 HOH X 67 767 79 HOH HOH . NA 9 HOH X 68 768 145 HOH HOH . NA 9 HOH X 69 769 142 HOH HOH . NA 9 HOH X 70 770 66 HOH HOH . NA 9 HOH X 71 771 150 HOH HOH . NA 9 HOH X 72 772 52 HOH HOH . NA 9 HOH X 73 773 16 HOH HOH . NA 9 HOH X 74 774 85 HOH HOH . NA 9 HOH X 75 775 30 HOH HOH . NA 9 HOH X 76 776 143 HOH HOH . NA 9 HOH X 77 777 12 HOH HOH . NA 9 HOH X 78 778 74 HOH HOH . NA 9 HOH X 79 779 81 HOH HOH . OA 9 HOH A 1 801 146 HOH HOH . OA 9 HOH A 2 802 158 HOH HOH . OA 9 HOH A 3 803 106 HOH HOH . OA 9 HOH A 4 804 17 HOH HOH . OA 9 HOH A 5 805 64 HOH HOH . OA 9 HOH A 6 806 41 HOH HOH . OA 9 HOH A 7 807 138 HOH HOH . OA 9 HOH A 8 808 103 HOH HOH . OA 9 HOH A 9 809 139 HOH HOH . OA 9 HOH A 10 810 39 HOH HOH . OA 9 HOH A 11 811 107 HOH HOH . OA 9 HOH A 12 812 147 HOH HOH . OA 9 HOH A 13 813 113 HOH HOH . OA 9 HOH A 14 814 51 HOH HOH . OA 9 HOH A 15 815 128 HOH HOH . OA 9 HOH A 16 816 75 HOH HOH . OA 9 HOH A 17 817 89 HOH HOH . OA 9 HOH A 18 818 59 HOH HOH . OA 9 HOH A 19 819 72 HOH HOH . OA 9 HOH A 20 820 104 HOH HOH . OA 9 HOH A 21 821 161 HOH HOH . OA 9 HOH A 22 822 10 HOH HOH . OA 9 HOH A 23 823 34 HOH HOH . OA 9 HOH A 24 824 18 HOH HOH . OA 9 HOH A 25 825 57 HOH HOH . OA 9 HOH A 26 826 82 HOH HOH . OA 9 HOH A 27 827 3 HOH HOH . OA 9 HOH A 28 828 8 HOH HOH . OA 9 HOH A 29 829 53 HOH HOH . OA 9 HOH A 30 830 115 HOH HOH . OA 9 HOH A 31 831 111 HOH HOH . OA 9 HOH A 32 832 114 HOH HOH . OA 9 HOH A 33 833 95 HOH HOH . OA 9 HOH A 34 834 37 HOH HOH . OA 9 HOH A 35 835 90 HOH HOH . OA 9 HOH A 36 836 88 HOH HOH . OA 9 HOH A 37 837 33 HOH HOH . OA 9 HOH A 38 838 35 HOH HOH . OA 9 HOH A 39 839 7 HOH HOH . OA 9 HOH A 40 840 1 HOH HOH . OA 9 HOH A 41 841 131 HOH HOH . OA 9 HOH A 42 842 137 HOH HOH . OA 9 HOH A 43 843 31 HOH HOH . OA 9 HOH A 44 844 48 HOH HOH . OA 9 HOH A 45 845 102 HOH HOH . OA 9 HOH A 46 846 38 HOH HOH . OA 9 HOH A 47 847 9 HOH HOH . OA 9 HOH A 48 848 87 HOH HOH . OA 9 HOH A 49 849 153 HOH HOH . OA 9 HOH A 50 850 144 HOH HOH . OA 9 HOH A 51 851 152 HOH HOH . OA 9 HOH A 52 852 99 HOH HOH . OA 9 HOH A 53 853 96 HOH HOH . OA 9 HOH A 54 854 23 HOH HOH . OA 9 HOH A 55 855 49 HOH HOH . OA 9 HOH A 56 856 32 HOH HOH . OA 9 HOH A 57 857 84 HOH HOH . OA 9 HOH A 58 858 77 HOH HOH . OA 9 HOH A 59 859 63 HOH HOH . OA 9 HOH A 60 860 97 HOH HOH . OA 9 HOH A 61 861 129 HOH HOH . OA 9 HOH A 62 862 120 HOH HOH . OA 9 HOH A 63 863 69 HOH HOH . OA 9 HOH A 64 864 40 HOH HOH . OA 9 HOH A 65 865 19 HOH HOH . OA 9 HOH A 66 866 58 HOH HOH . OA 9 HOH A 67 867 108 HOH HOH . OA 9 HOH A 68 868 109 HOH HOH . OA 9 HOH A 69 869 118 HOH HOH . OA 9 HOH A 70 870 121 HOH HOH . OA 9 HOH A 71 871 29 HOH HOH . OA 9 HOH A 72 872 110 HOH HOH . OA 9 HOH A 73 873 156 HOH HOH . OA 9 HOH A 74 874 148 HOH HOH . OA 9 HOH A 75 875 149 HOH HOH . OA 9 HOH A 76 876 122 HOH HOH . OA 9 HOH A 77 877 123 HOH HOH . OA 9 HOH A 78 878 61 HOH HOH . OA 9 HOH A 79 879 125 HOH HOH . OA 9 HOH A 80 880 50 HOH HOH . OA 9 HOH A 81 881 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . W 8 7.664 0.309 34.31 1 16.73 ? C1 RET 621 X 1 HETATM 2 C C2 RET . . . W 8 8.79 1.167 33.723 1 16.48 ? C2 RET 621 X 1 HETATM 3 C C3 RET . . . W 8 8.368 1.951 32.526 1 17.41 ? C3 RET 621 X 1 HETATM 4 C C4 RET . . . W 8 7.23 2.882 32.906 1 18.16 ? C4 RET 621 X 1 HETATM 5 C C5 RET . . . W 8 6.173 2.236 33.752 1 15.64 ? C5 RET 621 X 1 HETATM 6 C C6 RET . . . W 8 6.34 1.053 34.38 1 14.44 ? C6 RET 621 X 1 HETATM 7 C C7 RET . . . W 8 5.213 0.476 35.097 1 16.46 ? C7 RET 621 X 1 HETATM 8 C C8 RET . . . W 8 5.066 -0.802 35.544 1 16.31 ? C8 RET 621 X 1 HETATM 9 C C9 RET . . . W 8 3.937 -1.317 36.19 1 15.48 ? C9 RET 621 X 1 HETATM 10 C C10 RET . . . W 8 3.929 -2.619 36.704 1 16.36 ? C10 RET 621 X 1 HETATM 11 C C11 RET . . . W 8 2.923 -3.304 37.361 1 19.14 ? C11 RET 621 X 1 HETATM 12 C C12 RET . . . W 8 3.045 -4.576 37.843 1 16.22 ? C12 RET 621 X 1 HETATM 13 C C13 RET . . . W 8 2.085 -5.372 38.513 1 17.19 ? C13 RET 621 X 1 HETATM 14 C C14 RET . . . W 8 2.367 -6.67 38.788 1 19.03 ? C14 RET 621 X 1 HETATM 15 C C15 RET . . . W 8 1.344 -7.623 39.327 1 18.78 ? C15 RET 621 X 1 HETATM 16 C C16 RET . . . W 8 7.516 -0.925 33.407 1 17.07 ? C16 RET 621 X 1 HETATM 17 C C17 RET . . . W 8 8.113 -0.155 35.703 1 16.52 ? C17 RET 621 X 1 HETATM 18 C C18 RET . . . W 8 4.907 3.045 33.807 1 19.46 ? C18 RET 621 X 1 HETATM 19 C C19 RET . . . W 8 2.703 -0.494 36.335 1 17.62 ? C19 RET 621 X 1 HETATM 20 C C20 RET . . . W 8 0.802 -4.741 38.858 1 19.57 ? C20 RET 621 X 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #