data_6SV5 # _model_server_result.job_id DgYpFWUm_krWSAe5TE2sSw _model_server_result.datetime_utc '2024-12-01 07:13:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sv5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6SV5 # _exptl.entry_id 6SV5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SV5 _cell.length_a 58.277 _cell.length_b 58.277 _cell.length_c 281.504 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SV5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6SV5 _atom_sites.fract_transf_matrix[1][1] 0.017159 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017159 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003552 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 401 1 ATP ATP . C 3 HOH A 1 501 170 HOH HOH . C 3 HOH A 2 502 96 HOH HOH . C 3 HOH A 3 503 179 HOH HOH . C 3 HOH A 4 504 67 HOH HOH . C 3 HOH A 5 505 84 HOH HOH . C 3 HOH A 6 506 149 HOH HOH . C 3 HOH A 7 507 76 HOH HOH . C 3 HOH A 8 508 187 HOH HOH . C 3 HOH A 9 509 99 HOH HOH . C 3 HOH A 10 510 82 HOH HOH . C 3 HOH A 11 511 73 HOH HOH . C 3 HOH A 12 512 65 HOH HOH . C 3 HOH A 13 513 221 HOH HOH . C 3 HOH A 14 514 203 HOH HOH . C 3 HOH A 15 515 200 HOH HOH . C 3 HOH A 16 516 60 HOH HOH . C 3 HOH A 17 517 123 HOH HOH . C 3 HOH A 18 518 227 HOH HOH . C 3 HOH A 19 519 32 HOH HOH . C 3 HOH A 20 520 119 HOH HOH . C 3 HOH A 21 521 215 HOH HOH . C 3 HOH A 22 522 83 HOH HOH . C 3 HOH A 23 523 5 HOH HOH . C 3 HOH A 24 524 234 HOH HOH . C 3 HOH A 25 525 166 HOH HOH . C 3 HOH A 26 526 7 HOH HOH . C 3 HOH A 27 527 95 HOH HOH . C 3 HOH A 28 528 39 HOH HOH . C 3 HOH A 29 529 169 HOH HOH . C 3 HOH A 30 530 161 HOH HOH . C 3 HOH A 31 531 59 HOH HOH . C 3 HOH A 32 532 132 HOH HOH . C 3 HOH A 33 533 116 HOH HOH . C 3 HOH A 34 534 9 HOH HOH . C 3 HOH A 35 535 58 HOH HOH . C 3 HOH A 36 536 183 HOH HOH . C 3 HOH A 37 537 127 HOH HOH . C 3 HOH A 38 538 43 HOH HOH . C 3 HOH A 39 539 126 HOH HOH . C 3 HOH A 40 540 118 HOH HOH . C 3 HOH A 41 541 153 HOH HOH . C 3 HOH A 42 542 110 HOH HOH . C 3 HOH A 43 543 135 HOH HOH . C 3 HOH A 44 544 210 HOH HOH . C 3 HOH A 45 545 213 HOH HOH . C 3 HOH A 46 546 40 HOH HOH . C 3 HOH A 47 547 100 HOH HOH . C 3 HOH A 48 548 34 HOH HOH . C 3 HOH A 49 549 25 HOH HOH . C 3 HOH A 50 550 231 HOH HOH . C 3 HOH A 51 551 138 HOH HOH . C 3 HOH A 52 552 104 HOH HOH . C 3 HOH A 53 553 89 HOH HOH . C 3 HOH A 54 554 17 HOH HOH . C 3 HOH A 55 555 121 HOH HOH . C 3 HOH A 56 556 160 HOH HOH . C 3 HOH A 57 557 218 HOH HOH . C 3 HOH A 58 558 61 HOH HOH . C 3 HOH A 59 559 91 HOH HOH . C 3 HOH A 60 560 112 HOH HOH . C 3 HOH A 61 561 232 HOH HOH . C 3 HOH A 62 562 24 HOH HOH . C 3 HOH A 63 563 26 HOH HOH . C 3 HOH A 64 564 57 HOH HOH . C 3 HOH A 65 565 105 HOH HOH . C 3 HOH A 66 566 102 HOH HOH . C 3 HOH A 67 567 139 HOH HOH . C 3 HOH A 68 568 124 HOH HOH . C 3 HOH A 69 569 111 HOH HOH . C 3 HOH A 70 570 205 HOH HOH . C 3 HOH A 71 571 109 HOH HOH . C 3 HOH A 72 572 75 HOH HOH . C 3 HOH A 73 573 37 HOH HOH . C 3 HOH A 74 574 155 HOH HOH . C 3 HOH A 75 575 228 HOH HOH . C 3 HOH A 76 576 48 HOH HOH . C 3 HOH A 77 577 107 HOH HOH . C 3 HOH A 78 578 14 HOH HOH . C 3 HOH A 79 579 211 HOH HOH . C 3 HOH A 80 580 162 HOH HOH . C 3 HOH A 81 581 214 HOH HOH . C 3 HOH A 82 582 85 HOH HOH . C 3 HOH A 83 583 38 HOH HOH . C 3 HOH A 84 584 122 HOH HOH . C 3 HOH A 85 585 94 HOH HOH . C 3 HOH A 86 586 10 HOH HOH . C 3 HOH A 87 587 152 HOH HOH . C 3 HOH A 88 588 168 HOH HOH . C 3 HOH A 89 589 142 HOH HOH . C 3 HOH A 90 590 202 HOH HOH . C 3 HOH A 91 591 11 HOH HOH . C 3 HOH A 92 592 130 HOH HOH . C 3 HOH A 93 593 8 HOH HOH . C 3 HOH A 94 594 184 HOH HOH . C 3 HOH A 95 595 120 HOH HOH . C 3 HOH A 96 596 55 HOH HOH . C 3 HOH A 97 597 156 HOH HOH . C 3 HOH A 98 598 36 HOH HOH . C 3 HOH A 99 599 28 HOH HOH . C 3 HOH A 100 600 128 HOH HOH . C 3 HOH A 101 601 174 HOH HOH . C 3 HOH A 102 602 129 HOH HOH . C 3 HOH A 103 603 3 HOH HOH . C 3 HOH A 104 604 191 HOH HOH . C 3 HOH A 105 605 115 HOH HOH . C 3 HOH A 106 606 87 HOH HOH . C 3 HOH A 107 607 46 HOH HOH . C 3 HOH A 108 608 229 HOH HOH . C 3 HOH A 109 609 70 HOH HOH . C 3 HOH A 110 610 101 HOH HOH . C 3 HOH A 111 611 63 HOH HOH . C 3 HOH A 112 612 175 HOH HOH . C 3 HOH A 113 613 69 HOH HOH . C 3 HOH A 114 614 45 HOH HOH . C 3 HOH A 115 615 171 HOH HOH . C 3 HOH A 116 616 143 HOH HOH . C 3 HOH A 117 617 204 HOH HOH . C 3 HOH A 118 618 146 HOH HOH . C 3 HOH A 119 619 6 HOH HOH . C 3 HOH A 120 620 173 HOH HOH . C 3 HOH A 121 621 114 HOH HOH . C 3 HOH A 122 622 185 HOH HOH . C 3 HOH A 123 623 181 HOH HOH . C 3 HOH A 124 624 219 HOH HOH . C 3 HOH A 125 625 226 HOH HOH . C 3 HOH A 126 626 97 HOH HOH . C 3 HOH A 127 627 148 HOH HOH . C 3 HOH A 128 628 20 HOH HOH . C 3 HOH A 129 629 47 HOH HOH . C 3 HOH A 130 630 125 HOH HOH . C 3 HOH A 131 631 208 HOH HOH . C 3 HOH A 132 632 33 HOH HOH . C 3 HOH A 133 633 189 HOH HOH . C 3 HOH A 134 634 133 HOH HOH . C 3 HOH A 135 635 35 HOH HOH . C 3 HOH A 136 636 151 HOH HOH . C 3 HOH A 137 637 141 HOH HOH . C 3 HOH A 138 638 222 HOH HOH . C 3 HOH A 139 639 41 HOH HOH . C 3 HOH A 140 640 22 HOH HOH . C 3 HOH A 141 641 201 HOH HOH . C 3 HOH A 142 642 209 HOH HOH . C 3 HOH A 143 643 157 HOH HOH . C 3 HOH A 144 644 62 HOH HOH . C 3 HOH A 145 645 23 HOH HOH . C 3 HOH A 146 646 93 HOH HOH . C 3 HOH A 147 647 137 HOH HOH . C 3 HOH A 148 648 235 HOH HOH . C 3 HOH A 149 649 225 HOH HOH . C 3 HOH A 150 650 29 HOH HOH . C 3 HOH A 151 651 30 HOH HOH . C 3 HOH A 152 652 64 HOH HOH . C 3 HOH A 153 653 52 HOH HOH . C 3 HOH A 154 654 212 HOH HOH . C 3 HOH A 155 655 51 HOH HOH . C 3 HOH A 156 656 230 HOH HOH . C 3 HOH A 157 657 108 HOH HOH . C 3 HOH A 158 658 21 HOH HOH . C 3 HOH A 159 659 158 HOH HOH . C 3 HOH A 160 660 16 HOH HOH . C 3 HOH A 161 661 86 HOH HOH . C 3 HOH A 162 662 177 HOH HOH . C 3 HOH A 163 663 134 HOH HOH . C 3 HOH A 164 664 131 HOH HOH . C 3 HOH A 165 665 150 HOH HOH . C 3 HOH A 166 666 106 HOH HOH . C 3 HOH A 167 667 27 HOH HOH . C 3 HOH A 168 668 113 HOH HOH . C 3 HOH A 169 669 220 HOH HOH . C 3 HOH A 170 670 12 HOH HOH . C 3 HOH A 171 671 2 HOH HOH . C 3 HOH A 172 672 49 HOH HOH . C 3 HOH A 173 673 74 HOH HOH . C 3 HOH A 174 674 103 HOH HOH . C 3 HOH A 175 675 18 HOH HOH . C 3 HOH A 176 676 88 HOH HOH . C 3 HOH A 177 677 223 HOH HOH . C 3 HOH A 178 678 182 HOH HOH . C 3 HOH A 179 679 31 HOH HOH . C 3 HOH A 180 680 80 HOH HOH . C 3 HOH A 181 681 233 HOH HOH . C 3 HOH A 182 682 53 HOH HOH . C 3 HOH A 183 683 216 HOH HOH . C 3 HOH A 184 684 159 HOH HOH . C 3 HOH A 185 685 140 HOH HOH . C 3 HOH A 186 686 71 HOH HOH . C 3 HOH A 187 687 165 HOH HOH . C 3 HOH A 188 688 98 HOH HOH . C 3 HOH A 189 689 117 HOH HOH . C 3 HOH A 190 690 163 HOH HOH . C 3 HOH A 191 691 176 HOH HOH . C 3 HOH A 192 692 188 HOH HOH . C 3 HOH A 193 693 178 HOH HOH . C 3 HOH A 194 694 207 HOH HOH . C 3 HOH A 195 695 186 HOH HOH . C 3 HOH A 196 696 92 HOH HOH . C 3 HOH A 197 697 199 HOH HOH . C 3 HOH A 198 698 217 HOH HOH . C 3 HOH A 199 699 192 HOH HOH . C 3 HOH A 200 700 190 HOH HOH . C 3 HOH A 201 701 224 HOH HOH . C 3 HOH A 202 702 56 HOH HOH . C 3 HOH A 203 703 206 HOH HOH . C 3 HOH A 204 704 44 HOH HOH . C 3 HOH A 205 705 180 HOH HOH . C 3 HOH A 206 706 136 HOH HOH . C 3 HOH A 207 707 236 HOH HOH . C 3 HOH A 208 708 90 HOH HOH . C 3 HOH A 209 709 197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 -1.863 16.844 7.366 1 71.17 ? PG ATP 401 A 1 HETATM 2 O O1G ATP . . . B 2 -2.309 18.096 6.737 1 66.18 ? O1G ATP 401 A 1 HETATM 3 O O2G ATP . . . B 2 -2.983 15.891 7.651 1 67.14 ? O2G ATP 401 A 1 HETATM 4 O O3G ATP . . . B 2 -0.686 16.264 6.708 1 61.08 ? O3G ATP 401 A 1 HETATM 5 P PB ATP . . . B 2 -1.423 16.386 10.156 1 80.71 ? PB ATP 401 A 1 HETATM 6 O O1B ATP . . . B 2 -0.645 15.159 9.918 1 82.15 ? O1B ATP 401 A 1 HETATM 7 O O2B ATP . . . B 2 -1.1 17.328 11.218 1 73.54 ? O2B ATP 401 A 1 HETATM 8 O O3B ATP . . . B 2 -1.354 17.272 8.817 1 76.47 ? O3B ATP 401 A 1 HETATM 9 P PA ATP . . . B 2 -3.71 15.609 11.719 1 85.82 ? PA ATP 401 A 1 HETATM 10 O O1A ATP . . . B 2 -2.892 15.952 12.919 1 82.67 ? O1A ATP 401 A 1 HETATM 11 O O2A ATP . . . B 2 -4.368 14.289 11.628 1 85.36 ? O2A ATP 401 A 1 HETATM 12 O O3A ATP . . . B 2 -2.948 15.881 10.329 1 87.88 ? O3A ATP 401 A 1 HETATM 13 O O5' ATP . . . B 2 -4.791 16.685 11.534 1 67.52 ? O5' ATP 401 A 1 HETATM 14 C C5' ATP . . . B 2 -4.933 17.719 12.41 1 57.54 ? C5' ATP 401 A 1 HETATM 15 C C4' ATP . . . B 2 -5.474 18.698 11.404 1 51.2 ? C4' ATP 401 A 1 HETATM 16 O O4' ATP . . . B 2 -6.08 19.713 12.138 1 44.82 ? O4' ATP 401 A 1 HETATM 17 C C3' ATP . . . B 2 -4.254 19.285 10.763 1 49.62 ? C3' ATP 401 A 1 HETATM 18 O O3' ATP . . . B 2 -4.62 20.078 9.647 1 44.56 ? O3' ATP 401 A 1 HETATM 19 C C2' ATP . . . B 2 -3.769 20.095 11.93 1 47.62 ? C2' ATP 401 A 1 HETATM 20 O O2' ATP . . . B 2 -2.799 21.058 11.531 1 51 ? O2' ATP 401 A 1 HETATM 21 C C1' ATP . . . B 2 -5.084 20.618 12.527 1 43.68 ? C1' ATP 401 A 1 HETATM 22 N N9 ATP . . . B 2 -5.104 20.637 13.986 1 36.47 ? N9 ATP 401 A 1 HETATM 23 C C8 ATP . . . B 2 -4.907 19.621 14.802 1 33.38 ? C8 ATP 401 A 1 HETATM 24 N N7 ATP . . . B 2 -4.98 20.013 16.06 1 31.65 ? N7 ATP 401 A 1 HETATM 25 C C5 ATP . . . B 2 -5.233 21.312 16.047 1 31.9 ? C5 ATP 401 A 1 HETATM 26 C C6 ATP . . . B 2 -5.471 22.35 17.051 1 31.08 ? C6 ATP 401 A 1 HETATM 27 N N6 ATP . . . B 2 -5.432 22.083 18.367 1 28.02 ? N6 ATP 401 A 1 HETATM 28 N N1 ATP . . . B 2 -5.704 23.577 16.576 1 31.42 ? N1 ATP 401 A 1 HETATM 29 C C2 ATP . . . B 2 -5.733 23.854 15.287 1 31.48 ? C2 ATP 401 A 1 HETATM 30 N N3 ATP . . . B 2 -5.56 22.972 14.336 1 30.03 ? N3 ATP 401 A 1 HETATM 31 C C4 ATP . . . B 2 -5.315 21.714 14.665 1 31.69 ? C4 ATP 401 A 1 # _model_server_stats.io_time_ms 119 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #