data_6SVK # _model_server_result.job_id rm-Pr5d7mtefPrkw2urU5A _model_server_result.datetime_utc '2024-11-14 10:39:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6svk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6SVK # _exptl.entry_id 6SVK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6SVK _cell.length_a 48.677 _cell.length_b 48.677 _cell.length_c 177.846 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SVK _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1 B,C,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 32 A CYS 32 1_555 A SG CYS 61 A CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 B SG CYS 32 B CYS 32 1_555 B SG CYS 61 B CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 237 n n C1 C3 MLI sing 238 n n C1 H11 MLI sing 239 n n C1 H12 MLI sing 240 n n C2 O6 MLI doub 241 n n C2 O7 MLI sing 242 n n C3 O8 MLI doub 243 n n C3 O9 MLI sing 244 n n # _atom_sites.entry_id 6SVK _atom_sites.fract_transf_matrix[1][1] 0.020544 _atom_sites.fract_transf_matrix[1][2] 0.011861 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005623 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MLI B 1 201 1 MLI MLI . D 3 HOH A 1 201 60 HOH HOH . D 3 HOH A 2 202 67 HOH HOH . D 3 HOH A 3 203 54 HOH HOH . D 3 HOH A 4 204 61 HOH HOH . D 3 HOH A 5 205 58 HOH HOH . D 3 HOH A 6 206 20 HOH HOH . D 3 HOH A 7 207 6 HOH HOH . D 3 HOH A 8 208 71 HOH HOH . D 3 HOH A 9 209 28 HOH HOH . D 3 HOH A 10 210 51 HOH HOH . D 3 HOH A 11 211 109 HOH HOH . D 3 HOH A 12 212 7 HOH HOH . D 3 HOH A 13 213 87 HOH HOH . D 3 HOH A 14 214 141 HOH HOH . D 3 HOH A 15 215 45 HOH HOH . D 3 HOH A 16 216 116 HOH HOH . D 3 HOH A 17 217 14 HOH HOH . D 3 HOH A 18 218 66 HOH HOH . D 3 HOH A 19 219 4 HOH HOH . D 3 HOH A 20 220 90 HOH HOH . D 3 HOH A 21 221 138 HOH HOH . D 3 HOH A 22 222 56 HOH HOH . D 3 HOH A 23 223 130 HOH HOH . D 3 HOH A 24 224 3 HOH HOH . D 3 HOH A 25 225 64 HOH HOH . D 3 HOH A 26 226 107 HOH HOH . D 3 HOH A 27 227 132 HOH HOH . D 3 HOH A 28 228 85 HOH HOH . D 3 HOH A 29 229 24 HOH HOH . D 3 HOH A 30 230 113 HOH HOH . D 3 HOH A 31 231 140 HOH HOH . D 3 HOH A 32 232 10 HOH HOH . D 3 HOH A 33 233 125 HOH HOH . D 3 HOH A 34 234 151 HOH HOH . D 3 HOH A 35 235 137 HOH HOH . D 3 HOH A 36 236 146 HOH HOH . D 3 HOH A 37 237 127 HOH HOH . D 3 HOH A 38 238 1 HOH HOH . D 3 HOH A 39 239 79 HOH HOH . D 3 HOH A 40 240 57 HOH HOH . D 3 HOH A 41 241 96 HOH HOH . D 3 HOH A 42 242 13 HOH HOH . D 3 HOH A 43 243 106 HOH HOH . D 3 HOH A 44 244 11 HOH HOH . D 3 HOH A 45 245 18 HOH HOH . D 3 HOH A 46 246 88 HOH HOH . D 3 HOH A 47 247 78 HOH HOH . D 3 HOH A 48 248 111 HOH HOH . D 3 HOH A 49 249 50 HOH HOH . D 3 HOH A 50 250 103 HOH HOH . D 3 HOH A 51 251 40 HOH HOH . D 3 HOH A 52 252 74 HOH HOH . D 3 HOH A 53 253 29 HOH HOH . D 3 HOH A 54 254 99 HOH HOH . D 3 HOH A 55 255 30 HOH HOH . D 3 HOH A 56 256 62 HOH HOH . D 3 HOH A 57 257 114 HOH HOH . D 3 HOH A 58 258 25 HOH HOH . D 3 HOH A 59 259 72 HOH HOH . D 3 HOH A 60 260 143 HOH HOH . D 3 HOH A 61 261 126 HOH HOH . D 3 HOH A 62 262 134 HOH HOH . D 3 HOH A 63 263 77 HOH HOH . D 3 HOH A 64 264 43 HOH HOH . D 3 HOH A 65 265 93 HOH HOH . D 3 HOH A 66 266 119 HOH HOH . D 3 HOH A 67 267 123 HOH HOH . D 3 HOH A 68 268 154 HOH HOH . D 3 HOH A 69 269 98 HOH HOH . D 3 HOH A 70 270 76 HOH HOH . D 3 HOH A 71 271 145 HOH HOH . D 3 HOH A 72 272 34 HOH HOH . D 3 HOH A 73 273 152 HOH HOH . D 3 HOH A 74 274 59 HOH HOH . D 3 HOH A 75 275 150 HOH HOH . D 3 HOH A 76 276 131 HOH HOH . D 3 HOH A 77 277 133 HOH HOH . D 3 HOH A 78 278 122 HOH HOH . D 3 HOH A 79 279 95 HOH HOH . D 3 HOH A 80 280 89 HOH HOH . D 3 HOH A 81 281 148 HOH HOH . D 3 HOH A 82 282 167 HOH HOH . D 3 HOH A 83 283 165 HOH HOH . D 3 HOH A 84 284 161 HOH HOH . D 3 HOH A 85 285 157 HOH HOH . D 3 HOH A 86 286 158 HOH HOH . D 3 HOH A 87 287 166 HOH HOH . D 3 HOH A 88 288 175 HOH HOH . D 3 HOH A 89 289 173 HOH HOH . E 3 HOH B 1 301 101 HOH HOH . E 3 HOH B 2 302 174 HOH HOH . E 3 HOH B 3 303 22 HOH HOH . E 3 HOH B 4 304 104 HOH HOH . E 3 HOH B 5 305 144 HOH HOH . E 3 HOH B 6 306 97 HOH HOH . E 3 HOH B 7 307 48 HOH HOH . E 3 HOH B 8 308 63 HOH HOH . E 3 HOH B 9 309 139 HOH HOH . E 3 HOH B 10 310 94 HOH HOH . E 3 HOH B 11 311 55 HOH HOH . E 3 HOH B 12 312 46 HOH HOH . E 3 HOH B 13 313 100 HOH HOH . E 3 HOH B 14 314 35 HOH HOH . E 3 HOH B 15 315 135 HOH HOH . E 3 HOH B 16 316 17 HOH HOH . E 3 HOH B 17 317 23 HOH HOH . E 3 HOH B 18 318 81 HOH HOH . E 3 HOH B 19 319 36 HOH HOH . E 3 HOH B 20 320 33 HOH HOH . E 3 HOH B 21 321 27 HOH HOH . E 3 HOH B 22 322 39 HOH HOH . E 3 HOH B 23 323 26 HOH HOH . E 3 HOH B 24 324 9 HOH HOH . E 3 HOH B 25 325 149 HOH HOH . E 3 HOH B 26 326 41 HOH HOH . E 3 HOH B 27 327 21 HOH HOH . E 3 HOH B 28 328 38 HOH HOH . E 3 HOH B 29 329 69 HOH HOH . E 3 HOH B 30 330 83 HOH HOH . E 3 HOH B 31 331 8 HOH HOH . E 3 HOH B 32 332 121 HOH HOH . E 3 HOH B 33 333 86 HOH HOH . E 3 HOH B 34 334 12 HOH HOH . E 3 HOH B 35 335 37 HOH HOH . E 3 HOH B 36 336 92 HOH HOH . E 3 HOH B 37 337 16 HOH HOH . E 3 HOH B 38 338 53 HOH HOH . E 3 HOH B 39 339 178 HOH HOH . E 3 HOH B 40 340 2 HOH HOH . E 3 HOH B 41 341 19 HOH HOH . E 3 HOH B 42 342 47 HOH HOH . E 3 HOH B 43 343 105 HOH HOH . E 3 HOH B 44 344 5 HOH HOH . E 3 HOH B 45 345 136 HOH HOH . E 3 HOH B 46 346 172 HOH HOH . E 3 HOH B 47 347 120 HOH HOH . E 3 HOH B 48 348 70 HOH HOH . E 3 HOH B 49 349 31 HOH HOH . E 3 HOH B 50 350 117 HOH HOH . E 3 HOH B 51 351 118 HOH HOH . E 3 HOH B 52 352 73 HOH HOH . E 3 HOH B 53 353 142 HOH HOH . E 3 HOH B 54 354 68 HOH HOH . E 3 HOH B 55 355 44 HOH HOH . E 3 HOH B 56 356 108 HOH HOH . E 3 HOH B 57 357 102 HOH HOH . E 3 HOH B 58 358 65 HOH HOH . E 3 HOH B 59 359 147 HOH HOH . E 3 HOH B 60 360 124 HOH HOH . E 3 HOH B 61 361 179 HOH HOH . E 3 HOH B 62 362 177 HOH HOH . E 3 HOH B 63 363 80 HOH HOH . E 3 HOH B 64 364 42 HOH HOH . E 3 HOH B 65 365 176 HOH HOH . E 3 HOH B 66 366 32 HOH HOH . E 3 HOH B 67 367 110 HOH HOH . E 3 HOH B 68 368 52 HOH HOH . E 3 HOH B 69 369 15 HOH HOH . E 3 HOH B 70 370 84 HOH HOH . E 3 HOH B 71 371 82 HOH HOH . E 3 HOH B 72 372 129 HOH HOH . E 3 HOH B 73 373 49 HOH HOH . E 3 HOH B 74 374 75 HOH HOH . E 3 HOH B 75 375 115 HOH HOH . E 3 HOH B 76 376 128 HOH HOH . E 3 HOH B 77 377 112 HOH HOH . E 3 HOH B 78 378 91 HOH HOH . E 3 HOH B 79 379 181 HOH HOH . E 3 HOH B 80 380 153 HOH HOH . E 3 HOH B 81 381 156 HOH HOH . E 3 HOH B 82 382 170 HOH HOH . E 3 HOH B 83 383 164 HOH HOH . E 3 HOH B 84 384 160 HOH HOH . E 3 HOH B 85 385 163 HOH HOH . E 3 HOH B 86 386 155 HOH HOH . E 3 HOH B 87 387 162 HOH HOH . E 3 HOH B 88 388 180 HOH HOH . E 3 HOH B 89 389 159 HOH HOH . E 3 HOH B 90 390 168 HOH HOH . E 3 HOH B 91 391 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . C 2 25.088 -6.327 179.428 1 23.7 ? C1 MLI 201 B 1 HETATM 2 C C2 MLI . . . C 2 24.014 -5.346 178.968 1 23.88 ? C2 MLI 201 B 1 HETATM 3 C C3 MLI . . . C 2 26.151 -5.861 180.418 1 26.73 ? C3 MLI 201 B 1 HETATM 4 O O6 MLI . . . C 2 23.069 -5.805 178.265 1 26.66 ? O6 MLI 201 B 1 HETATM 5 O O7 MLI . . . C 2 24.08 -4.147 179.332 1 19.28 ? O7 MLI 201 B 1 HETATM 6 O O8 MLI . . . C 2 26.143 -4.654 180.828 1 19.85 ? O8 MLI 201 B 1 HETATM 7 O O9 MLI . . . C 2 26.948 -6.744 180.852 1 30.66 ? O9 MLI 201 B 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #